UHGV-0198185

Genome information

Genome length 21,035 bps

CDS count 26

Completeness 59.61% (medium-quality)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-0198185
vOTU ID	vOTU-030368
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN04262600_a1_ct14421_vs1@Siphoviridae__sp._ctcBQ1
BioSample	SAMN04262600
Country	El Salvador
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.61% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.29
Jumbo phage	No

Genome content
Genome length	21,035 bps
GC content	58.78%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	26
CDS density	95.30%
Average CDS length	775.73 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0198185_1	eggNOG-mapper	680646.RMDY18_15290	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA	NA
UHGV-0198185_1	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0198185_2	PHROG	phrog_7566	NA	unknown function
UHGV-0198185_2	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0198185_3	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0198185_3	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0198185_3	UniRef90	UniRef90_A0A3E2U1Y5	Single-stranded DNA-binding protein	NA
UHGV-0198185_3	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-0198185_3	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0198185_3	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0198185_3	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0198185_3	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0198185_3	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0198185_4	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0198185_4	UniRef90	UniRef90_A0A3E2U1Y3	Helix-turn-helix domain-containing protein	NA
UHGV-0198185_4	eggNOG-mapper	411471.SUBVAR_05835	Helix-turn-helix domain	NA
UHGV-0198185_4	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0198185_4	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0198185_4	Structural annotation	PF05584, MF_01819, TIGR01610, COG5625	NA	NA
UHGV-0198185_5	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0198185_5	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0198185_5	UniRef90	UniRef90_A0A3E2U3E3	DNA helicase	NA
UHGV-0198185_5	eggNOG-mapper	411471.SUBVAR_05838	Participates in initiation and elongation during chromosome replication	NA
UHGV-0198185_5	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0198185_5	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0198185_5	COG	COG0305	Replicative DNA helicase	NA
UHGV-0198185_5	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0198185_6	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0198185_6	UniRef90	UniRef90_A0A6N7TNN9	NA	NA
UHGV-0198185_6	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0198185_6	Structural annotation	PF07374	NA	NA
UHGV-0198185_7	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0198185_7	UniRef90	UniRef90_UPI0015F33F36	HNH endonuclease	NA
UHGV-0198185_7	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA
UHGV-0198185_7	Structural annotation	PF01844	NA	NA
UHGV-0198185_8	UniRef90	UniRef90_R6GFM0	Conserved domain protein	NA
UHGV-0198185_8	Structural annotation	PF19962	NA	NA
UHGV-0198185_9	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0198185_9	UniRef90	UniRef90_UPI001F1A3C47	terminase large subunit	NA
UHGV-0198185_9	eggNOG-mapper	748224.HMPREF9436_01467	phage terminase, large subunit	NA
UHGV-0198185_9	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0198185_9	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0198185_9	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0198185_10	PHROG	phrog_104	portal protein	head and packaging
UHGV-0198185_10	UniRef90	UniRef90_A0A3E2U200	Phage portal protein	NA
UHGV-0198185_10	eggNOG-mapper	748224.HMPREF9436_01468	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0198185_10	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0198185_10	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0198185_11	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0198185_11	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-0198185_11	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-0198185_11	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-0198185_13	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0198185_13	UniRef90	UniRef90_D4K444	Phage minor structural protein GP20	NA
UHGV-0198185_13	eggNOG-mapper	748224.HMPREF9436_03336	Phage minor structural protein GP20	NA
UHGV-0198185_13	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0198185_13	Structural annotation	PF06810	NA	NA
UHGV-0198185_14	PHROG	phrog_10	major head protein	head and packaging
UHGV-0198185_14	UniRef90	UniRef90_A0A1Y4TJU9	Phage major capsid protein	NA
UHGV-0198185_14	eggNOG-mapper	748224.HMPREF9436_00690	Phage capsid family	NA
UHGV-0198185_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0198185_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0198185_14	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0198185_14	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0198185_15	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0198185_15	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0198185_15	eggNOG-mapper	762211.BSTEL_0628	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0198185_15	Structural annotation	PF09355	NA	NA
UHGV-0198185_16	PHROG	phrog_501	head closure Hc1	connector
UHGV-0198185_16	UniRef90	UniRef90_A0A139QHM6	Phage-associated protein	NA
UHGV-0198185_16	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-0198185_16	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0198185_17	PHROG	phrog_387	neck protein	connector
UHGV-0198185_17	eggNOG-mapper	908337.HMPREF9257_0534	NA	NA
UHGV-0198185_18	PHROG	phrog_123	tail terminator	connector
UHGV-0198185_18	eggNOG-mapper	748224.HMPREF9436_00695	NA	NA
UHGV-0198185_18	Structural annotation	PF06141	NA	NA
UHGV-0198185_19	PHROG	phrog_117	major tail protein	tail
UHGV-0198185_19	UniRef90	UniRef90_A0A3E2U249	Phage tail protein	NA
UHGV-0198185_19	eggNOG-mapper	748224.HMPREF9436_00696	domain, Protein	NA
UHGV-0198185_19	COG	COG5492	NA	NA
UHGV-0198185_19	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0198185_20	PHROG	phrog_1526	NA	unknown function
UHGV-0198185_20	eggNOG-mapper	936375.HMPREF1152_0686	NA	NA
UHGV-0198185_21	Structural annotation	PF17318	NA	NA
UHGV-0198185_22	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0198185_22	eggNOG-mapper	748224.HMPREF9436_00699	Phage tail tape measure protein, TP901 family	NA
UHGV-0198185_22	COG	COG1511	NA	NA
UHGV-0198185_23	PHROG	phrog_3558	tail protein	tail
UHGV-0198185_23	UniRef90	UniRef90_UPI001C01D15B	phage tail protein	NA
UHGV-0198185_23	eggNOG-mapper	877414.ATWA01000019_gene2050	Phage minor structural protein	NA
UHGV-0198185_23	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0198185_23	COG	COG4926	Phage-related protein	NA
UHGV-0198185_23	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0198185_25	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-0198185_25	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0198185_25	UniRef90	UniRef90_A0A1B2I4V4	BIG2 domain-containing protein	NA
UHGV-0198185_25	eggNOG-mapper	1280664.AUIX01000028_gene1554	Bacterial Ig-like domain 2	NA
UHGV-0198185_25	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0198185_25	COG	COG5279	Cytokinesis protein 3, contains TGc (transglutaminase/protease-like) domain	NA
UHGV-0198185_26	UniRef90	UniRef90_A0A329U9Z4	BIG2 domain-containing protein	NA
UHGV-0198185_26	eggNOG-mapper	657322.FPR_13550	Bacterial Ig-like domain (group 2)	NA
UHGV-0198185_26	COG	COG5492	NA	NA