UHGV-0198331

Genome information

vOTU vOTU-020123

Genome length 25,946 bps

CDS count 46

Completeness 65.08% (medium-quality)

geNomad score 0.9827

Prediction confidence Confident

Genome information
Genome ID	UHGV-0198331
vOTU ID	vOTU-020123
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN03283291_a1_ct56092_vs1@Siphoviridae__sp._ctP5u1
BioSample	NA
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.08% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9827
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.08
Jumbo phage	No

Genome content
Genome length	25,946 bps
GC content	53.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	91.34%
Average CDS length	521.02 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0198331_2	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0198331_2	UniRef90	UniRef90_UPI000E5CE8E9	phage tail family protein	NA
UHGV-0198331_2	eggNOG-mapper	877414.ATWA01000019_gene2049	NA	NA
UHGV-0198331_2	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0198331_3	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0198331_3	eggNOG-mapper	1499683.CCFF01000017_gene2565	tape measure	NA
UHGV-0198331_3	COG	COG1511	NA	NA
UHGV-0198331_3	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0198331_4	UniRef90	UniRef90_A0A285PXU7	Consensus disorder prediction	NA
UHGV-0198331_5	PHROG	phrog_885	major tail protein	tail
UHGV-0198331_5	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0198331_5	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0198331_5	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0198331_6	PHROG	phrog_17405	head protein	head and packaging
UHGV-0198331_6	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-0198331_6	Structural annotation	PF11367	NA	NA
UHGV-0198331_7	PHROG	phrog_17977	NA	unknown function
UHGV-0198331_7	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0198331_7	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0198331_9	PHROG	phrog_267	major head protein	head and packaging
UHGV-0198331_9	UniRef90	UniRef90_A0A417IN35	P22 coat protein-protein 5 domain protein	NA
UHGV-0198331_9	eggNOG-mapper	1504823.CCMM01000008_gene1041	P22 coat protein-protein 5 domain protein	NA
UHGV-0198331_9	Pfam	PF19821	Phage capsid protein	Phage_capsid_2
UHGV-0198331_9	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0198331_10	UniRef90	UniRef90_B6CXE3	Fibronectin autolysin	NA
UHGV-0198331_10	Structural annotation	PF06810	NA	NA
UHGV-0198331_11	PHROG	phrog_1233	NA	unknown function
UHGV-0198331_11	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0198331_11	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0198331_12	Structural annotation	PF18152	NA	NA
UHGV-0198331_13	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0198331_13	UniRef90	UniRef90_A0A4D7AJK9	HK97 gp10 family phage protein	NA
UHGV-0198331_13	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-0198331_13	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0198331_13	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0198331_14	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0198331_14	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-0198331_14	eggNOG-mapper	1111121.HMPREF1247_0797	cell adhesion	NA
UHGV-0198331_14	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0198331_14	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0198331_14	COG	COG2369	NA	NA
UHGV-0198331_14	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0198331_15	PHROG	phrog_64	portal protein	head and packaging
UHGV-0198331_15	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0198331_15	eggNOG-mapper	1235800.C819_02239	phage portal protein, SPP1	NA
UHGV-0198331_15	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0198331_15	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0198331_16	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0198331_16	PHROG	phrog_10250	NA	unknown function
UHGV-0198331_16	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0198331_16	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0198331_16	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0198331_16	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0198331_16	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0198331_16	COG	COG1783	Phage terminase large subunit	NA
UHGV-0198331_16	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0198331_17	PHROG	phrog_419	NA	unknown function
UHGV-0198331_17	UniRef90	UniRef90_A6MAI4	Gp119	NA
UHGV-0198331_17	eggNOG-mapper	388452.A6MAI4_9CAUD	NA	NA
UHGV-0198331_17	Structural annotation	PF14083	NA	NA
UHGV-0198331_19	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0198331_19	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0198331_19	UniRef90	UniRef90_A0A810Q3Z7	N6_N4_Mtase domain-containing protein	NA
UHGV-0198331_19	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0198331_19	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0198331_19	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0198331_19	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0198331_19	COG	COG0863	DNA modification methylase	NA
UHGV-0198331_19	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0198331_21	PHROG	phrog_22543	NA	unknown function
UHGV-0198331_21	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-0198331_22	UniRef90	UniRef90_A0A8D9PDQ6	Restriction alleviation protein	NA
UHGV-0198331_22	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0198331_22	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0198331_23	PHROG	phrog_8684	NA	unknown function
UHGV-0198331_23	UniRef90	UniRef90_A0A373CDP9	YopX domain-containing protein	NA
UHGV-0198331_23	eggNOG-mapper	1226322.HMPREF1545_00036	YopX protein	NA
UHGV-0198331_23	Pfam	PF09643	YopX protein	YopX
UHGV-0198331_23	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0198331_23	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0198331_24	PHROG	phrog_38832	NA	unknown function
UHGV-0198331_24	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0198331_24	Structural annotation	PF10781	NA	NA
UHGV-0198331_26	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0198331_26	PHROG	phrog_16427	DNA methyltransferase	other
UHGV-0198331_26	UniRef90	UniRef90_D4KCC8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0198331_26	eggNOG-mapper	657322.FPR_26610	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0198331_26	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0198331_26	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0198331_28	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0198331_28	UniRef90	UniRef90_A0A8D9PDD6	Endonuclease	NA
UHGV-0198331_28	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0198331_28	Pfam	PF06356	NA	DUF1064
UHGV-0198331_28	Structural annotation	PF06356	NA	NA
UHGV-0198331_30	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0198331_30	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0198331_30	UniRef90	UniRef90_A0A810Q3X8	IstB_IS21 domain-containing protein	NA
UHGV-0198331_30	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-0198331_30	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0198331_30	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0198331_30	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0198331_31	PHROG	phrog_15768	NA	unknown function
UHGV-0198331_31	UniRef90	UniRef90_A0A416HMA1	NA	NA
UHGV-0198331_31	eggNOG-mapper	445970.ALIPUT_02689	DNA-binding transcription factor activity	NA
UHGV-0198331_31	Pfam	PF19808	NA	DUF6291
UHGV-0198331_31	COG	COG2188	DNA-binding transcriptional regulator, GntR family	NA
UHGV-0198331_31	Structural annotation	PF19808	NA	NA
UHGV-0198331_33	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0198331_33	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0198331_33	UniRef90	UniRef90_A0A350TKS2	Single-stranded DNA-binding protein	NA
UHGV-0198331_33	eggNOG-mapper	1226322.HMPREF1545_04080	Single-strand binding protein family	NA
UHGV-0198331_33	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0198331_33	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0198331_33	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0198331_33	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0198331_33	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0198331_34	PHROG	phrog_7566	NA	unknown function
UHGV-0198331_34	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0198331_34	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0198331_35	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0198331_35	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0198331_35	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0198331_35	Structural annotation	PF05772	NA	NA
UHGV-0198331_36	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0198331_36	UniRef90	UniRef90_UPI00130EB09C	ERF family protein	NA
UHGV-0198331_36	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-0198331_36	Pfam	PF04404	ERF superfamily	ERF
UHGV-0198331_36	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0198331_37	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0198331_37	UniRef90	UniRef90_A0A8D9PDS3	Resistance protein	NA
UHGV-0198331_37	eggNOG-mapper	748224.HMPREF9436_03356	Siphovirus Gp157	NA
UHGV-0198331_37	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0198331_37	Structural annotation	PF05565	NA	NA
UHGV-0198331_41	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0198331_41	UniRef90	UniRef90_A0A2Z4UCW0	XRE family transcriptional regulator	NA
UHGV-0198331_41	eggNOG-mapper	1121871.AUAT01000002_gene1384	Helix-turn-helix XRE-family like proteins	NA
UHGV-0198331_41	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0198331_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0198331_41	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0198331_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0198331_42	UniRef90	UniRef90_A0A842AGN1	Helix-turn-helix transcriptional regulator	NA
UHGV-0198331_42	eggNOG-mapper	903814.ELI_4515	Helix-turn-helix XRE-family like proteins	NA
UHGV-0198331_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0198331_42	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0198331_42	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0198331_45	UniRef90	UniRef90_A0A810PZB1	HTH cro/C1-type domain-containing protein	NA
UHGV-0198331_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0198331_45	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0198331_45	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0198331_46	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0198331_46	PHROG	phrog_95	integrase	integration and excision
UHGV-0198331_46	UniRef90	UniRef90_A0A3A9I9T1	Recombinase family protein	NA
UHGV-0198331_46	eggNOG-mapper	357809.Cphy_2997	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0198331_46	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0198331_46	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0198331_46	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0198331_46	Structural annotation	PF00239, NF041201, COG1961	NA	NA