UHGV-0198510

Genome information

Genome length 44,807 bps

CDS count 61

Completeness 99.90% (high-quality)

geNomad score 0.9736

Prediction confidence Confident

Genome information
Genome ID	UHGV-0198510
vOTU ID	vOTU-010956
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN09781741_a1_ct103836_vs1@Caudovirales__sp._ct3nr1
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9736
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.62
Jumbo phage	No

Genome content
Genome length	44,807 bps
GC content	51.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	93.37%
Average CDS length	689.75 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0198510_1	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0198510_1	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0198510_1	UniRef90	UniRef90_UPI00115BDA84	terminase small subunit	NA
UHGV-0198510_1	eggNOG-mapper	1260356.D920_01729	Terminase small subunit	NA
UHGV-0198510_1	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0198510_1	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0198510_1	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0198510_2	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0198510_2	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0198510_2	UniRef90	UniRef90_UPI00164BD94B	phage terminase large subunit	NA
UHGV-0198510_2	eggNOG-mapper	1408437.JNJN01000002_gene1397	Phage terminase large subunit	NA
UHGV-0198510_2	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0198510_2	COG	COG1783	Phage terminase large subunit	NA
UHGV-0198510_2	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0198510_3	PHROG	phrog_156	portal protein	head and packaging
UHGV-0198510_3	eggNOG-mapper	693746.OBV_23930	NA	NA
UHGV-0198510_3	Structural annotation	PF12236, MF_04120, TIGR01542, COG5518	NA	NA
UHGV-0198510_5	PHROG	phrog_35275	NA	unknown function
UHGV-0198510_6	PHROG	phrog_24113	NA	unknown function
UHGV-0198510_6	eggNOG-mapper	1226322.HMPREF1545_03847	NA	NA
UHGV-0198510_6	Structural annotation	PF11133, COG5471	NA	NA
UHGV-0198510_7	PHROG	phrog_371	major head protein	head and packaging
UHGV-0198510_7	UniRef90	UniRef90_A0A1Y4TDW7	Mu-like_gpT domain-containing protein	NA
UHGV-0198510_7	eggNOG-mapper	1226322.HMPREF1545_03848	NA	NA
UHGV-0198510_7	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0198510_7	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0198510_9	PHROG	phrog_13046	NA	unknown function
UHGV-0198510_9	eggNOG-mapper	693746.OBV_23880	NA	NA
UHGV-0198510_9	Structural annotation	PF20387	NA	NA
UHGV-0198510_10	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0198510_10	eggNOG-mapper	665956.HMPREF1032_03917	NA	NA
UHGV-0198510_10	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0198510_16	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0198510_16	Structural annotation	NF040910	NA	NA
UHGV-0198510_17	KOfam	K07273	acm; lysozyme	NA
UHGV-0198510_17	PHROG	phrog_291	endolysin	lysis
UHGV-0198510_17	UniRef90	UniRef90_A0A4R1QM33	GH25 family lysozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0198510_17	eggNOG-mapper	537013.CLOSTMETH_01756	hydrolase, family 25	NA
UHGV-0198510_17	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0198510_17	COG	COG1388	LysM repeat	NA
UHGV-0198510_17	Structural annotation	PF01183, MF_02227, NF002576, COG3757	NA	NA
UHGV-0198510_18	PHROG	phrog_937	hemolysin	other
UHGV-0198510_18	eggNOG-mapper	1297617.JPJD01000099_gene2176	NA	NA
UHGV-0198510_19	PHROG	phrog_1129	holin	lysis
UHGV-0198510_19	UniRef90	UniRef90_A0A1G9U2I2	Phage holin family Hol44, holin superfamily V	NA
UHGV-0198510_19	eggNOG-mapper	537013.CLOSTMETH_03774	NA	NA
UHGV-0198510_19	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0198510_19	Structural annotation	PF16079	NA	NA
UHGV-0198510_21	PHROG	phrog_22978	NA	unknown function
UHGV-0198510_21	eggNOG-mapper	748224.HMPREF9436_01406	NA	NA
UHGV-0198510_23	UniRef90	UniRef90_A0A1Y3RJS2	Sigma70_r4_2 domain-containing protein	NA
UHGV-0198510_26	KOfam	K14059	int; integrase	NA
UHGV-0198510_26	PHROG	phrog_1	integrase	integration and excision
UHGV-0198510_26	UniRef90	UniRef90_UPI0008345DF0	tyrosine-type recombinase/integrase	NA
UHGV-0198510_26	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0198510_26	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0198510_26	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0198510_26	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0198510_26	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0198510_27	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0198510_27	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-0198510_27	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0198510_29	PHROG	phrog_14556	NA	unknown function
UHGV-0198510_29	eggNOG-mapper	1410653.JHVC01000032_gene1036	domain protein	NA
UHGV-0198510_29	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-0198510_30	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0198510_30	eggNOG-mapper	428125.CLOLEP_02738	SMART helix-turn-helix domain protein	NA
UHGV-0198510_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0198510_30	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0198510_30	Structural annotation	PF12844, NF007257, COG1396	NA	NA
UHGV-0198510_31	eggNOG-mapper	742738.HMPREF9460_02486	NA	NA
UHGV-0198510_31	Structural annotation	TIGR03070	NA	NA
UHGV-0198510_32	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0198510_32	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0198510_32	UniRef90	UniRef90_A0A1Q6R5B0	Bro-N domain-containing protein	NA
UHGV-0198510_32	eggNOG-mapper	1122146.AUHP01000010_gene1023	BRO family, N-terminal domain	NA
UHGV-0198510_32	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0198510_32	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0198510_32	COG	COG3617	Prophage antirepressor	NA
UHGV-0198510_32	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0198510_33	PHROG	phrog_4433	NA	unknown function
UHGV-0198510_33	eggNOG-mapper	573061.Clocel_3578	regulation of DNA-templated transcription, elongation	NA
UHGV-0198510_33	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0198510_38	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0198510_38	UniRef90	UniRef90_A0A7X6XAG1	Endonuclease	NA
UHGV-0198510_38	eggNOG-mapper	1121344.JHZO01000003_gene985	YqaJ viral recombinase family	NA
UHGV-0198510_38	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0198510_38	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0198510_38	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0198510_38	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0198510_39	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0198510_39	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0198510_39	UniRef90	UniRef90_U2SBP2	Recombination and repair protein RecT	NA
UHGV-0198510_39	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0198510_39	Pfam	PF03837	RecT family	RecT
UHGV-0198510_39	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0198510_39	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0198510_39	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0198510_40	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0198510_40	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0198510_40	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0198510_40	Structural annotation	PF00436, MF_00720, NF004512, COG0629	NA	NA
UHGV-0198510_43	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0198510_43	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0198510_43	UniRef90	UniRef90_UPI000694786E	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0198510_43	eggNOG-mapper	469604.HMPREF0946_01101	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0198510_43	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0198510_43	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0198510_43	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0198510_43	Structural annotation	PF09681, PF09524, TIGR01714, TIGR02220, COG3388	NA	NA
UHGV-0198510_44	PHROG	phrog_9804	NA	unknown function
UHGV-0198510_46	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0198510_46	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0198510_46	UniRef90	UniRef90_A0A1H7KWC5	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	NA
UHGV-0198510_46	eggNOG-mapper	665956.HMPREF1032_00140	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0198510_46	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0198510_46	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0198510_46	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0198510_46	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0198510_48	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0198510_48	UniRef90	UniRef90_UPI001C0F5697	NA	NA
UHGV-0198510_48	eggNOG-mapper	1236514.BAKL01000051_gene3708	NA	NA
UHGV-0198510_48	Pfam	PF06356	NA	DUF1064
UHGV-0198510_48	Structural annotation	PF06356	NA	NA
UHGV-0198510_50	PHROG	phrog_3136	NA	unknown function
UHGV-0198510_50	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0198510_50	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0198510_50	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0198510_52	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0198510_53	Structural annotation	PF02888	NA	NA
UHGV-0198510_54	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0198510_54	UniRef90	UniRef90_Q5YA82	28	NA
UHGV-0198510_54	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0198510_54	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0198510_58	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0198510_58	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0198510_58	UniRef90	UniRef90_A0A3E2XUS7	XRE family transcriptional regulator	NA
UHGV-0198510_58	eggNOG-mapper	1304866.K413DRAFT_0803	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0198510_58	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0198510_58	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0198510_58	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0198510_59	eggNOG-mapper	1273103.NM10_00919	NA	NA