UHGV-0199120

Genome information

Genome length 29,997 bps

CDS count 42

Completeness 66.48% (medium-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0199120
vOTU ID	vOTU-030427
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN00991590_a1_ct39523_vs1@linear@Caudovirales__sp._ct0Ji1
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.48% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.78
Jumbo phage	No

Genome content
Genome length	29,997 bps
GC content	40.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	89.07%
Average CDS length	640.93 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0199120_1	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0199120_1	UniRef90	UniRef90_A0A412EKN3	Phage capsid protein	NA
UHGV-0199120_1	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0199120_1	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0199120_1	COG	COG2369	NA	NA
UHGV-0199120_1	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0199120_2	PHROG	phrog_3754	NA	unknown function
UHGV-0199120_2	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0199120_3	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-0199120_3	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0199120_4	PHROG	phrog_21718	NA	unknown function
UHGV-0199120_4	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0199120_5	PHROG	phrog_22984	NA	unknown function
UHGV-0199120_6	PHROG	phrog_16490	NA	unknown function
UHGV-0199120_6	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0199120_7	PHROG	phrog_20016	NA	unknown function
UHGV-0199120_7	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0199120_7	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0199120_7	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0199120_8	PHROG	phrog_28802	NA	unknown function
UHGV-0199120_8	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0199120_9	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0199120_9	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0199120_9	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0199120_9	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0199120_9	Structural annotation	PF06810	NA	NA
UHGV-0199120_10	PHROG	phrog_544	major head protein	head and packaging
UHGV-0199120_10	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0199120_10	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0199120_10	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0199120_10	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0199120_11	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0199120_11	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0199120_12	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0199120_12	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0199120_12	UniRef90	UniRef90_A0A2V2D6Q6	N6_Mtase domain-containing protein	NA
UHGV-0199120_12	eggNOG-mapper	1444306.JFZC01000034_gene2643	type I restriction-modification system	NA
UHGV-0199120_12	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0199120_12	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0199120_12	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0199120_12	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0199120_13	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0199120_13	UniRef90	UniRef90_A0A415G5B2	NA	NA
UHGV-0199120_13	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0199120_13	Structural annotation	PF14359	NA	NA
UHGV-0199120_14	PHROG	phrog_1129	holin	lysis
UHGV-0199120_14	UniRef90	UniRef90_A0A395X7B2	Enolase	NA
UHGV-0199120_14	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0199120_14	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0199120_14	Structural annotation	PF06946	NA	NA
UHGV-0199120_15	PHROG	phrog_3366	NA	unknown function
UHGV-0199120_15	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0199120_15	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0199120_16	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0199120_16	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0199120_16	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0199120_16	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0199120_16	Structural annotation	PF11114	NA	NA
UHGV-0199120_17	PHROG	phrog_3266	tail completion	connector
UHGV-0199120_17	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0199120_17	Structural annotation	PF12691	NA	NA
UHGV-0199120_18	PHROG	phrog_3099	NA	unknown function
UHGV-0199120_18	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0199120_18	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0199120_19	PHROG	phrog_11299	NA	unknown function
UHGV-0199120_19	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0199120_19	Structural annotation	PF10666	NA	NA
UHGV-0199120_20	PHROG	phrog_706	NA	unknown function
UHGV-0199120_20	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-0199120_20	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0199120_20	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0199120_20	Structural annotation	PF06854	NA	NA
UHGV-0199120_21	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0199120_21	UniRef90	UniRef90_A0A173R880	Phage-related protein	NA
UHGV-0199120_21	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0199120_21	COG	COG1511	NA	NA
UHGV-0199120_21	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0199120_22	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0199120_23	PHROG	phrog_6616	tail protein	tail
UHGV-0199120_23	UniRef90	UniRef90_A0A2V2D052	Peptidase S74 domain-containing protein	NA
UHGV-0199120_23	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0199120_23	COG	COG4926	Phage-related protein	NA
UHGV-0199120_23	Structural annotation	PF05113, PF03921, PF13884, NF033848, COG3500	NA	NA
UHGV-0199120_24	UniRef90	UniRef90_UPI001C0EBDDC	pyocin knob domain-containing protein	NA
UHGV-0199120_25	PHROG	phrog_9589	endolysin	lysis
UHGV-0199120_25	UniRef90	UniRef90_A0A412SB50	SH3b domain-containing protein	NA
UHGV-0199120_25	eggNOG-mapper	476272.RUMHYD_01851	Putative peptidoglycan binding domain	NA
UHGV-0199120_25	Pfam	PF05257	CHAP domain	CHAP
UHGV-0199120_25	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0199120_25	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0199120_25	Structural annotation	PF08239, PF09953, NF040678, COG3942, COG4991	NA	NA
UHGV-0199120_26	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0199120_26	PHROG	phrog_95	integrase	integration and excision
UHGV-0199120_26	UniRef90	UniRef90_A0A2V2D7K6	Recombinase family protein	NA
UHGV-0199120_26	eggNOG-mapper	33035.JPJF01000109_gene439	Resolvase, N terminal domain	NA
UHGV-0199120_26	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0199120_26	Pfam	PF07508	Recombinase	Recombinase
UHGV-0199120_26	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0199120_26	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0199120_26	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0199120_27	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0199120_27	eggNOG-mapper	1235799.C818_01804	Bacterial Ig-like domain 2	NA
UHGV-0199120_27	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0199120_27	COG	COG5492	NA	NA
UHGV-0199120_30	UniRef90	UniRef90_A0A4Q5ERT3	XRE family transcriptional regulator	NA
UHGV-0199120_30	eggNOG-mapper	397290.C810_01441	Helix-turn-helix XRE-family like proteins	NA
UHGV-0199120_30	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0199120_30	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-0199120_32	Structural annotation	PF21441, COG1846	NA	NA
UHGV-0199120_37	Structural annotation	PF13601, MF_01819, NF038251, COG1846	NA	NA
UHGV-0199120_42	PHROG	phrog_5070	NA	unknown function
UHGV-0199120_42	UniRef90	UniRef90_A0A4S2Q3Z3	Polymer-forming cytoskeletal protein (Fragment)	NA
UHGV-0199120_42	eggNOG-mapper	768710.DesyoDRAFT_1067	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0199120_42	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA