UHGV-0199623

Genome information

Genome length 23,822 bps

CDS count 32

Completeness 66.31% (medium-quality)

geNomad score 0.9789

Prediction confidence Confident

Genome information
Genome ID	UHGV-0199623
vOTU ID	vOTU-029027
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN09781742_a1_ct27831_vs1@Siphoviridae__sp._ct5kf1
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.31% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9789
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.91
Jumbo phage	No

Genome content
Genome length	23,822 bps
GC content	56.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	92.29%
Average CDS length	691.03 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0199623_1	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0199623_1	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0199623_1	UniRef90	UniRef90_A0A1Q6E4L4	HTH cro/C1-type domain-containing protein	NA
UHGV-0199623_1	eggNOG-mapper	521095.Apar_0551	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0199623_1	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0199623_1	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0199623_2	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0199623_2	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0199623_2	UniRef90	UniRef90_K0ZBQ0	Bro-N domain-containing protein	NA
UHGV-0199623_2	eggNOG-mapper	883077.HMPREF9241_01671	BRO family, N-terminal domain	NA
UHGV-0199623_2	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0199623_2	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0199623_2	COG	COG3617	Prophage antirepressor	NA
UHGV-0199623_2	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0199623_4	PHROG	phrog_21825	endolysin	lysis
UHGV-0199623_4	UniRef90	UniRef90_A0A561ERX2	Putative peptidoglycan binding protein	NA
UHGV-0199623_4	eggNOG-mapper	553973.CLOHYLEM_04450	Ami_2	NA
UHGV-0199623_4	Pfam	PF05257	CHAP domain	CHAP
UHGV-0199623_4	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0199623_4	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0199623_4	Structural annotation	PF01471, TIGR02594, NF038080, COG3409	NA	NA
UHGV-0199623_6	PHROG	phrog_199	holin	lysis
UHGV-0199623_6	UniRef90	UniRef90_S4HBL4	Toxin secretion/phage lysis holin	NA
UHGV-0199623_6	eggNOG-mapper	1437610.BREU_1264	Bacteriophage holin family	NA
UHGV-0199623_6	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0199623_6	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0199623_6	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0199623_8	PHROG	phrog_9116	tail protein	tail
UHGV-0199623_8	UniRef90	UniRef90_R6I7N6	Tail Collar domain protein	NA
UHGV-0199623_8	eggNOG-mapper	1121382.JQKG01000014_gene268	tail collar domain protein	NA
UHGV-0199623_8	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0199623_8	COG	COG4675	Phage tail collar domain	NA
UHGV-0199623_9	KOfam	K03646	tolA; colicin import membrane protein	NA
UHGV-0199623_9	PHROG	phrog_3639	minor tail protein	tail
UHGV-0199623_9	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0199623_9	COG	COG0729	Outer membrane translocation and assembly module TamA	NA
UHGV-0199623_10	UniRef90	UniRef90_R6H7L2	BppU_N domain-containing protein	NA
UHGV-0199623_10	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0199623_12	PHROG	phrog_1887	tail protein	tail
UHGV-0199623_12	eggNOG-mapper	883077.HMPREF9241_01708	NA	NA
UHGV-0199623_12	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0199623_13	UniRef90	UniRef90_UPI000C773D0D	fibronectin type III domain-containing protein	NA
UHGV-0199623_13	eggNOG-mapper	1235794.C811_01381	Fibronectin type 3 domain	NA
UHGV-0199623_13	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0199623_14	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0199623_14	UniRef90	UniRef90_A0A1Q6E4K3	PhageMin_Tail domain-containing protein	NA
UHGV-0199623_14	eggNOG-mapper	445975.COLSTE_01102	Phage-related minor tail protein	NA
UHGV-0199623_14	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0199623_14	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0199623_14	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0199623_14	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0199623_15	PHROG	phrog_706	NA	unknown function
UHGV-0199623_15	UniRef90	UniRef90_UPI000DF8321D	Gp15 family bacteriophage protein	NA
UHGV-0199623_15	eggNOG-mapper	479437.Elen_2635	Bacteriophage Gp15 protein	NA
UHGV-0199623_15	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0199623_17	PHROG	phrog_820	major tail protein	tail
UHGV-0199623_17	UniRef90	UniRef90_A0A1Q6E4N2	BIG2 domain-containing protein	NA
UHGV-0199623_17	eggNOG-mapper	469378.Ccur_02690	Bacterial Ig-like domain (group 2)	NA
UHGV-0199623_17	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0199623_17	COG	COG5492	NA	NA
UHGV-0199623_17	Structural annotation	PF06199, PF02368, TIGR02126, COG5437	NA	NA
UHGV-0199623_18	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0199623_18	eggNOG-mapper	986075.CathTA2_0701	Minor capsid protein from bacteriophage	NA
UHGV-0199623_18	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0199623_19	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0199623_19	UniRef90	UniRef90_A0A7T3V3Z0	Minor capsid protein	NA
UHGV-0199623_19	eggNOG-mapper	1462526.BN990_03879	Minor capsid protein	NA
UHGV-0199623_19	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0199623_19	Structural annotation	PF11114	NA	NA
UHGV-0199623_20	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0199623_20	UniRef90	UniRef90_A0A374U573	Minor capsid protein	NA
UHGV-0199623_20	eggNOG-mapper	469378.Ccur_02720	Minor capsid protein	NA
UHGV-0199623_20	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0199623_20	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0199623_21	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0199623_21	eggNOG-mapper	1125712.HMPREF1316_2144	NA	NA
UHGV-0199623_23	PHROG	phrog_422	major head protein	head and packaging
UHGV-0199623_23	UniRef90	UniRef90_A0A644YHM7	S-l_SbsC_C domain-containing protein	NA
UHGV-0199623_23	eggNOG-mapper	479437.Elen_2627	NA	NA
UHGV-0199623_23	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0199623_24	PHROG	phrog_31118	NA	unknown function
UHGV-0199623_24	eggNOG-mapper	445975.COLSTE_01111	NA	NA
UHGV-0199623_24	Structural annotation	PF06810	NA	NA
UHGV-0199623_25	PHROG	phrog_1865	NA	unknown function
UHGV-0199623_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0199623_26	UniRef90	UniRef90_A0A1H8UFB1	Toxin 50 (Fragment)	NA
UHGV-0199623_26	eggNOG-mapper	1391647.AVSV01000003_gene1804	Phage minor capsid protein 2	NA
UHGV-0199623_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0199623_26	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0199623_26	COG	COG2369	NA	NA
UHGV-0199623_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-0199623_27	UniRef90	UniRef90_A0A172RXF3	Phage portal protein, putative, A118 family	NA
UHGV-0199623_27	eggNOG-mapper	469378.Ccur_02800	phage minor capsid protein	NA
UHGV-0199623_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0199623_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0199623_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0199623_28	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0199623_28	UniRef90	UniRef90_A0A1Q6E4H5	Terminase	NA
UHGV-0199623_28	eggNOG-mapper	1232436.CAPF01000009_gene1764	Phage terminase, large subunit, PBSX family	NA
UHGV-0199623_28	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0199623_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0199623_28	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0199623_29	PHROG	phrog_4102	terminase small subunit	head and packaging
UHGV-0199623_29	UniRef90	UniRef90_A0A7X5IF66	XRE family transcriptional regulator	NA
UHGV-0199623_29	eggNOG-mapper	661087.HMPREF1008_00898	NA	NA
UHGV-0199623_30	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0199623_30	UniRef90	UniRef90_R6HJG6	HTH_17 domain-containing protein	NA
UHGV-0199623_30	eggNOG-mapper	742722.HMPREF9463_00773	Helix-turn-helix domain	NA
UHGV-0199623_30	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0199623_30	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0199623_30	Structural annotation	PF15970, PF12728, TIGR01764, COG1598, COG3311	NA	NA
UHGV-0199623_31	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0199623_31	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0199623_31	UniRef90	UniRef90_R6HBK1	YcfA-like protein	NA
UHGV-0199623_31	eggNOG-mapper	467661.RKLH11_129	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0199623_31	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0199623_31	Structural annotation	PF07927	NA	NA