UHGV-0199772

Genome information

Genome length 37,425 bps

CDS count 51

Completeness 95.50% (high-quality)

geNomad score 0.9736

Prediction confidence Confident

Genome information
Genome ID	UHGV-0199772
vOTU ID	vOTU-065535
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN05826994_a1_ct4585_vs1@linear@Siphoviridae__sp._ctMsX1
BioSample	NA
Country	Finland
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.50% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9736
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.35
Jumbo phage	No

Genome content
Genome length	37,425 bps
GC content	49.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	91.11%
Average CDS length	670.71 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0199772_2	eggNOG-mapper	1121346.KB899820_gene2840	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0199772_2	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0199772_3	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0199772_3	PHROG	phrog_15001	endolysin	lysis
UHGV-0199772_3	UniRef90	UniRef90_A0A2V2E834	Amidase	NA
UHGV-0199772_3	eggNOG-mapper	1235835.C814_01292	Ami_2	NA
UHGV-0199772_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0199772_3	Pfam	PF01476	LysM domain	LysM
UHGV-0199772_3	COG	COG1388	LysM repeat	NA
UHGV-0199772_3	Structural annotation	PF01510, PF01476, MF_02014, MF_04111, NF008758, TIGR02899, COG5632, COG1388	NA	NA
UHGV-0199772_4	PHROG	phrog_4105	NA	unknown function
UHGV-0199772_4	eggNOG-mapper	1291050.JAGE01000001_gene433	NA	NA
UHGV-0199772_5	PHROG	phrog_33625	holin	lysis
UHGV-0199772_5	UniRef90	UniRef90_A0A8J6IQE1	Phage holin	NA
UHGV-0199772_5	eggNOG-mapper	428125.CLOLEP_01780	COG COG5546 Small integral membrane protein	NA
UHGV-0199772_5	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0199772_5	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0199772_5	COG	COG5546	NA	NA
UHGV-0199772_5	Structural annotation	COG5546	NA	NA
UHGV-0199772_6	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0199772_6	UniRef90	UniRef90_UPI00138A59E4	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0199772_6	eggNOG-mapper	706434.HMPREF9429_00535	PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA
UHGV-0199772_6	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0199772_6	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0199772_7	PHROG	phrog_1281	NA	unknown function
UHGV-0199772_7	UniRef90	UniRef90_UPI00189B7989	NA	NA
UHGV-0199772_7	eggNOG-mapper	428127.EUBDOL_01537	NA	NA
UHGV-0199772_7	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0199772_7	COG	COG3600	NA	NA
UHGV-0199772_9	KOfam	K14059	int; integrase	NA
UHGV-0199772_9	PHROG	phrog_1	integrase	integration and excision
UHGV-0199772_9	UniRef90	UniRef90_UPI0005AA7FA8	site-specific integrase	NA
UHGV-0199772_9	eggNOG-mapper	693746.OBV_19730	Belongs to the 'phage' integrase family	NA
UHGV-0199772_9	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0199772_9	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0199772_9	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0199772_10	PHROG	phrog_5978	NA	unknown function
UHGV-0199772_10	UniRef90	UniRef90_A0A3D2HVN7	Fic family protein	NA
UHGV-0199772_10	eggNOG-mapper	936375.HMPREF1152_1541	Filamentation induced by cAMP protein fic	NA
UHGV-0199772_10	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0199772_10	COG	COG3177	Fic family protein	NA
UHGV-0199772_10	Structural annotation	PF07183, MF_01911, NF040876, COG3177	NA	NA
UHGV-0199772_11	KOfam	K05516	cbpA; curved DNA-binding protein	NA
UHGV-0199772_11	PHROG	phrog_14336	NA	unknown function
UHGV-0199772_11	UniRef90	UniRef90_A0A1I2D407	DnaJ domain-containing protein	NA
UHGV-0199772_11	eggNOG-mapper	1244531.CIG1485E_1179	ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins	NA
UHGV-0199772_11	Pfam	PF00226	DnaJ domain	DnaJ
UHGV-0199772_11	COG	COG0484	DnaJ-class molecular chaperone with C-terminal Zn finger domain	NA
UHGV-0199772_13	PHROG	phrog_87	metallo-protease	other
UHGV-0199772_13	UniRef90	UniRef90_UPI00189AFBD9	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0199772_13	eggNOG-mapper	1007096.BAGW01000011_gene2354	IrrE N-terminal-like domain	NA
UHGV-0199772_13	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0199772_13	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0199772_13	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0199772_14	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0199772_14	UniRef90	UniRef90_A0A1C6GVI0	HTH cro/C1-type domain-containing protein	NA
UHGV-0199772_14	eggNOG-mapper	428125.CLOLEP_02738	SMART helix-turn-helix domain protein	NA
UHGV-0199772_14	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0199772_14	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0199772_14	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0199772_15	UniRef90	UniRef90_A0A1Y4J3I8	XRE family transcriptional regulator	NA
UHGV-0199772_15	eggNOG-mapper	428125.CLOLEP_02737	NA	NA
UHGV-0199772_17	PHROG	phrog_1090	NA	unknown function
UHGV-0199772_17	UniRef90	UniRef90_UPI000C06B978	CRISPR-associated protein Cas2	NA
UHGV-0199772_17	eggNOG-mapper	324057.Pjdr2_1651	NA	NA
UHGV-0199772_21	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0199772_23	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0199772_23	UniRef90	UniRef90_UPI001E5A6693	NA	NA
UHGV-0199772_23	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-0199772_23	Pfam	PF06378	NA	DUF1071
UHGV-0199772_23	Structural annotation	PF06378, COG4712	NA	NA
UHGV-0199772_24	PHROG	phrog_7566	NA	unknown function
UHGV-0199772_24	eggNOG-mapper	1280698.AUJS01000007_gene1020	NA	NA
UHGV-0199772_25	PHROG	phrog_1389	NA	unknown function
UHGV-0199772_25	eggNOG-mapper	1347392.CCEZ01000060_gene3269	NA	NA
UHGV-0199772_25	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0199772_26	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0199772_26	UniRef90	UniRef90_A0A3D4VRX2	NA	NA
UHGV-0199772_26	eggNOG-mapper	445972.ANACOL_03338	DnaD domain protein	NA
UHGV-0199772_26	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0199772_26	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0199772_26	Structural annotation	PF14297	NA	NA
UHGV-0199772_27	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0199772_27	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0199772_27	UniRef90	UniRef90_A0A3D0M0E8	Single-stranded DNA-binding protein	NA
UHGV-0199772_27	eggNOG-mapper	428125.CLOLEP_00518	Single-stranded DNA-binding protein	NA
UHGV-0199772_27	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0199772_27	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0199772_27	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0199772_27	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0199772_27	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0199772_28	Structural annotation	PF19157	NA	NA
UHGV-0199772_29	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0199772_29	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0199772_29	UniRef90	UniRef90_UPI00073E9FE9	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0199772_29	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0199772_30	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0199772_30	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0199772_30	UniRef90	UniRef90_A0A6N9PVN9	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0199772_30	eggNOG-mapper	1291050.JAGE01000001_gene2907	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0199772_30	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0199772_30	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0199772_30	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0199772_30	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0199772_31	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0199772_31	UniRef90	UniRef90_A0A0K2CZB3	Acetyltransferase	NA
UHGV-0199772_31	eggNOG-mapper	1121468.AUBR01000007_gene285	COG NOG12663 non supervised orthologous group	NA
UHGV-0199772_31	Structural annotation	PF11039, MF_02210, NF040503, COG1247	NA	NA
UHGV-0199772_32	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-0199772_32	UniRef90	UniRef90_A0A7I8D3P4	NA	NA
UHGV-0199772_32	eggNOG-mapper	551790.B5BTW0_9CAUD	Cytidine and deoxycytidylate deaminase zinc-binding region	NA
UHGV-0199772_32	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0199772_32	Structural annotation	PF18909	NA	NA
UHGV-0199772_33	PHROG	phrog_25732	NA	unknown function
UHGV-0199772_33	UniRef90	UniRef90_UPI001C641777	Lar family restriction alleviation protein	NA
UHGV-0199772_33	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0199772_36	eggNOG-mapper	1211814.CAPG01000088_gene4027	NA	NA
UHGV-0199772_38	PHROG	phrog_924	NA	unknown function
UHGV-0199772_38	UniRef90	UniRef90_A0A7G9WJH9	NA	NA
UHGV-0199772_38	Pfam	PF04448	NA	DUF551
UHGV-0199772_38	Structural annotation	NF041588	NA	NA
UHGV-0199772_40	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0199772_40	eggNOG-mapper	580331.Thit_1400	NA	NA
UHGV-0199772_40	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0199772_41	PHROG	phrog_24579	terminase small subunit	head and packaging
UHGV-0199772_41	UniRef90	UniRef90_A0A1C6G1E6	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-0199772_41	eggNOG-mapper	1123288.SOV_2c10540	Helix-turn-helix of insertion element transposase	NA
UHGV-0199772_41	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-0199772_42	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0199772_42	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0199772_42	UniRef90	UniRef90_A0A7V8A6P5	Phage terminase large subunit PBSX family	NA
UHGV-0199772_42	eggNOG-mapper	1314.HKU360_01493	Phage terminase, large subunit	NA
UHGV-0199772_42	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0199772_42	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0199772_42	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0199772_42	COG	COG1783	Phage terminase large subunit	NA
UHGV-0199772_42	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0199772_45	PHROG	phrog_422	major head protein	head and packaging
UHGV-0199772_45	UniRef90	UniRef90_R5SNJ0	Lj928 prophage protein	NA
UHGV-0199772_45	eggNOG-mapper	1121335.Clst_0392	NA	NA
UHGV-0199772_45	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0199772_46	PHROG	phrog_156	portal protein	head and packaging
UHGV-0199772_46	eggNOG-mapper	1121091.AUMP01000003_gene2583	NA	NA
UHGV-0199772_46	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0199772_47	Structural annotation	PF11650	NA	NA
UHGV-0199772_48	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0199772_48	UniRef90	UniRef90_A0A847CX66	NA	NA
UHGV-0199772_48	eggNOG-mapper	1408437.JNJN01000001_gene1713	NA	NA
UHGV-0199772_48	Structural annotation	PF11134, MF_03027, NF010237, TIGR03511, COG2319	NA	NA
UHGV-0199772_50	PHROG	phrog_22978	NA	unknown function
UHGV-0199772_50	UniRef90	UniRef90_N1LKB2	LPD38 domain-containing protein	NA
UHGV-0199772_50	eggNOG-mapper	268407.PWYN_12490	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis	NA
UHGV-0199772_50	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0199772_50	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0199772_51	eggNOG-mapper	1120998.AUFC01000030_gene2248	NA	NA
UHGV-0199772_51	Structural annotation	PF10651	NA	NA