UHGV-0200212

Genome information

Genome length 29,182 bps

CDS count 39

Completeness 65.24% (medium-quality)

geNomad score 0.9567

Prediction confidence Confident

Genome information
Genome ID	UHGV-0200212
vOTU ID	vOTU-030473
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN05827028_a1_ct17174_vs1@linear@Siphoviridae__sp._ctX2T1
BioSample	SAMN05827028
Country	Russia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.24% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9567
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.35
Jumbo phage	No

Genome content
Genome length	29,182 bps
GC content	39.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	90.01%
Average CDS length	677.23 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0200212_1	KOfam	K17758	nnrD; ADP-dependent NAD(P)H-hydrate dehydratase [EC:4.2.1.136]	NA
UHGV-0200212_1	UniRef90	UniRef90_A0A0R1EXJ6	ADP-dependent (S)-NAD(P)H-hydrate dehydratase	NA
UHGV-0200212_1	eggNOG-mapper	913848.AELK01000173_gene2031	Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S- and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration	NA
UHGV-0200212_1	Pfam	PF01256	Carbohydrate kinase	Carb_kinase
UHGV-0200212_1	NCBIFam	TIGR00196.1	NAD(P)H-hydrate dehydratase	NA
UHGV-0200212_1	COG	COG0063	NAD(P)H-hydrate repair enzyme Nnr, NAD(P)H-hydrate dehydratase domain	NA
UHGV-0200212_1	HAMAP	MF_01965	ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]	NA
UHGV-0200212_4	Pfam	PF07410	Streptococcus thermophilus bacteriophage Gp111 protein	Phage_Gp111
UHGV-0200212_5	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0200212_5	PHROG	phrog_291	endolysin	lysis
UHGV-0200212_5	UniRef90	UniRef90_UPI0017853D7B	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0200212_5	eggNOG-mapper	913848.AELK01000127_gene1727	Glycosyl hydrolases family 25	NA
UHGV-0200212_5	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0200212_5	Pfam	PF01476	LysM domain	LysM
UHGV-0200212_5	COG	COG1388	LysM repeat	NA
UHGV-0200212_5	Structural annotation	PF01476, PF18697, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0200212_6	UniRef90	UniRef90_UPI0014859BA1	phage holin	NA
UHGV-0200212_6	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0200212_7	UniRef90	UniRef90_A0A2S1T5I6	XkdX family protein	NA
UHGV-0200212_7	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0200212_8	PHROG	phrog_24421	NA	unknown function
UHGV-0200212_8	UniRef90	UniRef90_A0A4Y5FF97	Attachment protein	NA
UHGV-0200212_8	eggNOG-mapper	1071400.LBUCD034_1567	NA	NA
UHGV-0200212_9	PHROG	phrog_20633	tail protein	tail
UHGV-0200212_9	UniRef90	UniRef90_UPI00032A4792	pyocin knob domain-containing protein	NA
UHGV-0200212_9	eggNOG-mapper	1136177.KCA1_1103	NA	NA
UHGV-0200212_10	UniRef90	UniRef90_UPI0004ABF0B2	hemolysin XhlA family protein	NA
UHGV-0200212_10	eggNOG-mapper	1423743.JCM14108_2897	NA	NA
UHGV-0200212_11	PHROG	phrog_134	NA	unknown function
UHGV-0200212_11	UniRef90	UniRef90_A0A8G1E7V8	XkdX family protein	NA
UHGV-0200212_11	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0200212_11	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-0200212_11	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0200212_14	PHROG	phrog_10512	virion structural protein	head and packaging
UHGV-0200212_14	UniRef90	UniRef90_UPI000F77F523	BppU family phage baseplate upper protein	NA
UHGV-0200212_14	eggNOG-mapper	913848.AELK01000127_gene1738	NA	NA
UHGV-0200212_14	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0200212_14	Structural annotation	PF10651, TIGR03503	NA	NA
UHGV-0200212_15	eggNOG-mapper	1605.Lani381_0370	Prophage endopeptidase tail	NA
UHGV-0200212_15	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0200212_16	PHROG	phrog_25979	NA	unknown function
UHGV-0200212_16	UniRef90	UniRef90_UPI0007F18668	collagen-like protein	NA
UHGV-0200212_16	eggNOG-mapper	913848.AELK01000127_gene1741	Collagen triple helix repeat (20 copies)	NA
UHGV-0200212_16	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0200212_17	PHROG	phrog_326	tail protein with endopeptidase domain	other
UHGV-0200212_17	UniRef90	UniRef90_A0A2Z6FGG3	NA	NA
UHGV-0200212_17	eggNOG-mapper	941770.GL622178_gene345	Prophage endopeptidase tail	NA
UHGV-0200212_17	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0200212_17	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0200212_17	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0200212_17	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0200212_18	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0200212_18	UniRef90	UniRef90_A0A2L0E289	Phage tail family protein	NA
UHGV-0200212_18	eggNOG-mapper	1136177.KCA1_1096	Phage tail protein	NA
UHGV-0200212_18	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0200212_18	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0200212_19	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-0200212_19	UniRef90	UniRef90_A0A2L0E1X7	Phage tail tape measure protein	NA
UHGV-0200212_19	eggNOG-mapper	148814.JI66_06990	Phage tail tape measure protein TP901	NA
UHGV-0200212_19	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0200212_19	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0200212_19	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0200212_19	COG	COG3953	SLT domain protein	NA
UHGV-0200212_19	Structural annotation	PF15871, COG5280	NA	NA
UHGV-0200212_20	PHROG	phrog_187	head-tail adaptor	connector
UHGV-0200212_21	PHROG	phrog_88	major tail protein	tail
UHGV-0200212_21	UniRef90	UniRef90_UPI001013E387	phage tail protein	NA
UHGV-0200212_21	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0200212_21	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0200212_21	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0200212_23	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0200212_23	UniRef90	UniRef90_UPI001015B8D2	head-tail adaptor protein	NA
UHGV-0200212_23	eggNOG-mapper	1209989.TepiRe1_2600	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0200212_23	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0200212_23	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0200212_23	Structural annotation	TIGR01725	NA	NA
UHGV-0200212_24	UniRef90	UniRef90_A0A2Z6FGL8	Head-tail adaptor protein	NA
UHGV-0200212_24	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0200212_25	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0200212_25	UniRef90	UniRef90_UPI001014F44C	head-tail connector protein	NA
UHGV-0200212_25	eggNOG-mapper	1140001.I571_01158	Phage gp6-like head-tail connector protein	NA
UHGV-0200212_25	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0200212_25	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0200212_25	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0200212_26	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0200212_26	UniRef90	UniRef90_UPI0007F0F79F	Ig-like domain-containing protein	NA
UHGV-0200212_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-0200212_27	UniRef90	UniRef90_A0A417Z656	Phage major capsid protein	NA
UHGV-0200212_27	eggNOG-mapper	585506.HMPREF0877_0174	Phage capsid family	NA
UHGV-0200212_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0200212_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0200212_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0200212_27	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0200212_28	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0200212_28	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0200212_28	UniRef90	UniRef90_A0A0R2EMX7	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0200212_28	eggNOG-mapper	349123.Lreu23DRAFT_3158	Belongs to the peptidase S14 family	NA
UHGV-0200212_28	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0200212_28	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0200212_28	Structural annotation	PF00574, MF_00444, NF009203, COG0740	NA	NA
UHGV-0200212_29	PHROG	phrog_12	portal protein	head and packaging
UHGV-0200212_29	UniRef90	UniRef90_UPI001014D21D	phage portal protein	NA
UHGV-0200212_29	eggNOG-mapper	574376.BAMA_12570	Phage portal protein	NA
UHGV-0200212_29	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0200212_29	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0200212_29	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0200212_29	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0200212_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0200212_30	UniRef90	UniRef90_UPI0010304DF1	terminase large subunit	NA
UHGV-0200212_30	eggNOG-mapper	1348908.KI518589_gene2540	Terminase	NA
UHGV-0200212_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0200212_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0200212_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0200212_30	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0200212_31	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0200212_31	UniRef90	UniRef90_A0A1Z5IYT5	Phage-related terminase-small subunit	NA
UHGV-0200212_31	eggNOG-mapper	272562.CA_C1896	Phage terminase, small subunit	NA
UHGV-0200212_31	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0200212_31	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0200212_31	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0200212_31	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0200212_32	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0200212_32	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0200212_32	UniRef90	UniRef90_UPI001013E95C	HNH endonuclease	NA
UHGV-0200212_32	eggNOG-mapper	1274524.BSONL12_06103	HNH endonuclease	NA
UHGV-0200212_32	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0200212_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0200212_32	Structural annotation	PF05766, NF008448	NA	NA
UHGV-0200212_35	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0200212_35	UniRef90	UniRef90_UPI001EF452C3	transcriptional regulator	NA
UHGV-0200212_35	eggNOG-mapper	1203076.CAKF01000006_gene580	Transcriptional regulator, ArpU family	NA
UHGV-0200212_35	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-0200212_35	Structural annotation	PF05263, MF_00674, TIGR01637, COG1191	NA	NA
UHGV-0200212_37	eggNOG-mapper	1114972.AUAW01000005_gene288	NA	NA
UHGV-0200212_38	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0200212_38	UniRef90	UniRef90_A0A425X8S1	NA	NA
UHGV-0200212_38	eggNOG-mapper	387344.LVIS_1121	NA	NA
UHGV-0200212_38	Pfam	PF06356	NA	DUF1064
UHGV-0200212_39	eggNOG-mapper	1445809.A0A0A7AR29_9CAUD	Phage protein (N4 Gp49/phage Sf6 gene 66) family	NA