UHGV-0200376

Genome information

vOTU vOTU-019522

Genome length 23,935 bps

CDS count 33

Completeness 56.29% (medium-quality)

geNomad score 0.9756

Prediction confidence Confident

Genome information
Genome ID	UHGV-0200376
vOTU ID	vOTU-019522
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN05826503_a1_ct1910_vs1@linear@Siphoviridae__sp._ctHjE1
BioSample	NA
Country	Russia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.29% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9756
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.82
Jumbo phage	No

Genome content
Genome length	23,935 bps
GC content	39.62%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	92.22%
Average CDS length	671.36 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0200376_1	Structural annotation	PF11184	NA	NA
UHGV-0200376_2	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0200376_2	UniRef90	UniRef90_A0A0F0C7S4	LexA repressor	NA
UHGV-0200376_2	eggNOG-mapper	1120978.KB894079_gene593	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0200376_2	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0200376_2	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0200376_2	Structural annotation	PF01726, MF_00732, NF006812, COG3388	NA	NA
UHGV-0200376_3	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0200376_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0200376_3	UniRef90	UniRef90_UPI001C034698	tyrosine-type recombinase/integrase	NA
UHGV-0200376_3	eggNOG-mapper	553174.HMPREF0659_A6122	Belongs to the 'phage' integrase family	NA
UHGV-0200376_3	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0200376_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0200376_3	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0200376_3	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0200376_4	UniRef90	UniRef90_A0A3R6DFA9	ABC transporter ATP-binding protein	NA
UHGV-0200376_5	eggNOG-mapper	97139.C824_04735	NA	NA
UHGV-0200376_5	Pfam	PF18863	AbiJ N-terminal domain 4	AbiJ_NTD4
UHGV-0200376_5	Structural annotation	PF18863, PF05168, COG1895	NA	NA
UHGV-0200376_6	PHROG	phrog_33130	NA	unknown function
UHGV-0200376_6	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0200376_6	Structural annotation	PF10922	NA	NA
UHGV-0200376_7	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0200376_7	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0200376_7	UniRef90	UniRef90_A0A3R6H2I4	Terminase_3 domain-containing protein	NA
UHGV-0200376_7	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0200376_7	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0200376_7	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0200376_7	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0200376_7	COG	COG1783	Phage terminase large subunit	NA
UHGV-0200376_7	Structural annotation	PF04466, PF17288, PF06056, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0200376_9	PHROG	phrog_1233	NA	unknown function
UHGV-0200376_9	UniRef90	UniRef90_UPI001D077F84	basic secretory family protein	NA
UHGV-0200376_9	eggNOG-mapper	936375.HMPREF1152_1074	NA	NA
UHGV-0200376_11	PHROG	phrog_533	portal protein	head and packaging
UHGV-0200376_11	UniRef90	UniRef90_A0A3B9CD47	Phage capsid protein	NA
UHGV-0200376_11	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-0200376_11	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0200376_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0200376_12	UniRef90	UniRef90_UPI000E4A8F9F	minor capsid protein	NA
UHGV-0200376_12	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0200376_12	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0200376_12	Structural annotation	PF11114	NA	NA
UHGV-0200376_13	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0200376_13	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-0200376_13	eggNOG-mapper	642492.Clole_0816	NA	NA
UHGV-0200376_13	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0200376_13	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0200376_13	COG	COG2369	NA	NA
UHGV-0200376_13	Structural annotation	PF06152, PF15542, TIGR01641	NA	NA
UHGV-0200376_14	PHROG	phrog_1865	NA	unknown function
UHGV-0200376_14	Structural annotation	PF07073, MF_00436, NF037951, COG4568	NA	NA
UHGV-0200376_16	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0200376_16	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0200376_16	UniRef90	UniRef90_A0A174ELV3	Anaerobic benzoate catabolism transcriptional regulator	NA
UHGV-0200376_16	eggNOG-mapper	665950.HMPREF1025_01508	Helix-turn-helix XRE-family like proteins	NA
UHGV-0200376_16	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0200376_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0200376_16	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0200376_16	Structural annotation	PF01381, MF_00535, NF010465, COG1476	NA	NA
UHGV-0200376_17	UniRef90	UniRef90_A0A174TAQ5	HTH cro/C1-type domain-containing protein	NA
UHGV-0200376_17	eggNOG-mapper	1304866.K413DRAFT_0802	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0200376_17	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0200376_17	Structural annotation	PF01381, NF000090, COG3655	NA	NA
UHGV-0200376_18	PHROG	phrog_2011	anti-repressor Ant	transcription regulation
UHGV-0200376_18	UniRef90	UniRef90_UPI0015EBD672	Rha family transcriptional regulator	NA
UHGV-0200376_18	eggNOG-mapper	742738.HMPREF9460_02487	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0200376_18	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0200376_18	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0200376_18	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0200376_18	Structural annotation	PF09669, PF03374, TIGR02681, COG3646	NA	NA
UHGV-0200376_20	eggNOG-mapper	1539298.JO41_08210	Phage minor structural protein GP20	NA
UHGV-0200376_21	PHROG	phrog_247	major head protein	head and packaging
UHGV-0200376_21	UniRef90	UniRef90_A0A3B9CD38	Phage coat protein	NA
UHGV-0200376_21	eggNOG-mapper	1292035.H476_1014	NA	NA
UHGV-0200376_21	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0200376_21	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0200376_22	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0200376_22	eggNOG-mapper	397290.C810_05226	NA	NA
UHGV-0200376_23	PHROG	phrog_3366	NA	unknown function
UHGV-0200376_23	eggNOG-mapper	411490.ANACAC_00775	NA	NA
UHGV-0200376_23	Pfam	PF20536	NA	DUF6751
UHGV-0200376_23	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0200376_24	PHROG	phrog_3266	tail completion	connector
UHGV-0200376_24	eggNOG-mapper	397290.C810_05232	NA	NA
UHGV-0200376_24	Structural annotation	PF12691	NA	NA
UHGV-0200376_25	PHROG	phrog_3099	NA	unknown function
UHGV-0200376_25	eggNOG-mapper	1235790.C805_00082	NA	NA
UHGV-0200376_25	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0200376_26	PHROG	phrog_11299	NA	unknown function
UHGV-0200376_26	Structural annotation	PF10666	NA	NA
UHGV-0200376_27	PHROG	phrog_706	NA	unknown function
UHGV-0200376_27	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-0200376_27	eggNOG-mapper	645991.Sgly_0348	Bacteriophage Gp15 protein	NA
UHGV-0200376_27	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0200376_27	Structural annotation	PF06854	NA	NA
UHGV-0200376_28	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0200376_28	UniRef90	UniRef90_A0A174WQ97	Phage-like protein	NA
UHGV-0200376_28	eggNOG-mapper	1235790.C805_00087	tape measure	NA
UHGV-0200376_28	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0200376_28	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0200376_29	PHROG	phrog_1194	NA	unknown function
UHGV-0200376_29	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-0200376_29	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0200376_30	PHROG	phrog_13879	NA	unknown function
UHGV-0200376_30	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-0200376_30	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0200376_32	PHROG	phrog_18725	NA	unknown function
UHGV-0200376_32	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0200376_33	COG	COG5301	Phage-related tail fiber protein	NA