UHGV-0200513

Genome information

Genome length 38,637 bps

CDS count 57

Completeness 99.71% (high-quality)

geNomad score 0.9707

Prediction confidence Confident

Genome information
Genome ID	UHGV-0200513
vOTU ID	vOTU-008332
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN00791965_a1_ct54567_vs1@linear@Siphoviridae__sp._ctnK11
BioSample	SAMN00791965
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.71% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9707
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.9
Jumbo phage	No

Genome content
Genome length	38,637 bps
GC content	40.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	88.51%
Average CDS length	604.84 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0200513_1	KOfam	K14059	int; integrase	NA
UHGV-0200513_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0200513_1	UniRef90	UniRef90_H7BVF7	Tyr recombinase domain-containing protein	NA
UHGV-0200513_1	eggNOG-mapper	742740.HMPREF9474_02388	Belongs to the 'phage' integrase family	NA
UHGV-0200513_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0200513_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0200513_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0200513_2	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0200513_2	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0200513_2	UniRef90	UniRef90_UPI00164CACBE	helix-turn-helix domain-containing protein	NA
UHGV-0200513_2	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0200513_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0200513_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0200513_2	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0200513_3	eggNOG-mapper	411468.CLOSCI_00322	NA	NA
UHGV-0200513_4	PHROG	phrog_6058	NA	unknown function
UHGV-0200513_4	UniRef90	UniRef90_E7GN86	HTH cro/C1-type domain-containing protein	NA
UHGV-0200513_4	eggNOG-mapper	742740.HMPREF9474_02381	NA	NA
UHGV-0200513_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0200513_4	Structural annotation	PF01381, PF12728, MF_00535, NF041951, COG1396	NA	NA
UHGV-0200513_11	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0200513_11	UniRef90	UniRef90_UPI001C0F077C	NA	NA
UHGV-0200513_11	eggNOG-mapper	397288.C806_00086	NA	NA
UHGV-0200513_11	Pfam	PF14359	NA	DUF4406
UHGV-0200513_11	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0200513_13	NCBIFam	NF033495.1	BC1881 family protein	NA
UHGV-0200513_14	PHROG	phrog_3292	NA	unknown function
UHGV-0200513_14	UniRef90	UniRef90_A0A3R6NQ88	KTSC domain-containing protein	NA
UHGV-0200513_14	eggNOG-mapper	205918.Psyr_0099	helicase activity	NA
UHGV-0200513_14	Pfam	PF13619	KTSC domain	KTSC
UHGV-0200513_14	COG	COG0433	Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains	NA
UHGV-0200513_14	Structural annotation	PF13619	NA	NA
UHGV-0200513_16	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0200513_16	eggNOG-mapper	1235793.C809_03589	NA	NA
UHGV-0200513_16	Structural annotation	PF21578	NA	NA
UHGV-0200513_17	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0200513_17	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0200513_17	UniRef90	UniRef90_A0A3E3ILW4	RNase H type-1 domain-containing protein	NA
UHGV-0200513_17	eggNOG-mapper	1321778.HMPREF1982_00127	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0200513_17	Pfam	PF00075	RNase H	RNase_H
UHGV-0200513_17	COG	COG0328	Ribonuclease HI	NA
UHGV-0200513_17	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0200513_18	PHROG	phrog_7566	NA	unknown function
UHGV-0200513_18	eggNOG-mapper	1235800.C819_00511	NA	NA
UHGV-0200513_20	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-0200513_21	PHROG	phrog_4433	NA	unknown function
UHGV-0200513_21	eggNOG-mapper	742733.HMPREF9469_00220	regulation of DNA-templated transcription, elongation	NA
UHGV-0200513_21	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0200513_21	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0200513_22	PHROG	phrog_8470	NA	unknown function
UHGV-0200513_22	UniRef90	UniRef90_UPI0018999714	PcfJ domain-containing protein	NA
UHGV-0200513_22	eggNOG-mapper	742733.HMPREF9469_00219	PcfJ-like protein	NA
UHGV-0200513_22	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0200513_22	Structural annotation	PF14284	NA	NA
UHGV-0200513_23	PHROG	phrog_15077	NA	unknown function
UHGV-0200513_23	UniRef90	UniRef90_A0A3E3IZW1	NA	NA
UHGV-0200513_23	eggNOG-mapper	483218.BACPEC_01165	NA	NA
UHGV-0200513_23	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0200513_26	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0200513_26	UniRef90	UniRef90_R5ZJF1	HNH endonuclease	NA
UHGV-0200513_26	eggNOG-mapper	742740.HMPREF9474_03129	HNH endonuclease	NA
UHGV-0200513_26	Pfam	PF14279	HNH endonuclease	HNH_5
UHGV-0200513_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0200513_26	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0200513_27	Pfam	PF20712	Cyanobacterial TRADD-N associated 2-Transmembrane domain	CyanoTRADDas_TM
UHGV-0200513_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0200513_28	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0200513_28	Structural annotation	PF02996	NA	NA
UHGV-0200513_29	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0200513_29	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0200513_29	UniRef90	UniRef90_A0A6B4E3R2	Phage portal protein	NA
UHGV-0200513_29	eggNOG-mapper	1415774.U728_838	terminase, small subunit	NA
UHGV-0200513_29	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0200513_29	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0200513_29	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0200513_29	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0200513_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0200513_30	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0200513_30	UniRef90	UniRef90_A0A3D2TUW4	Terminase	NA
UHGV-0200513_30	eggNOG-mapper	552396.HMPREF0863_01628	Phage terminase, large subunit, PBSX family	NA
UHGV-0200513_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0200513_30	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0200513_31	PHROG	phrog_533	portal protein	head and packaging
UHGV-0200513_31	UniRef90	UniRef90_A0A356C6G5	Capsid protein	NA
UHGV-0200513_31	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-0200513_31	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0200513_32	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0200513_32	UniRef90	UniRef90_A0A3D5LQU4	Minor capsid protein	NA
UHGV-0200513_32	eggNOG-mapper	742740.HMPREF9474_03503	Phage minor capsid protein 2	NA
UHGV-0200513_32	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0200513_32	COG	COG2369	NA	NA
UHGV-0200513_32	Structural annotation	PF06152, PF01129, NF041404	NA	NA
UHGV-0200513_34	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0200513_34	UniRef90	UniRef90_A0A415G5B2	NA	NA
UHGV-0200513_34	eggNOG-mapper	1256908.HMPREF0373_00479	NA	NA
UHGV-0200513_34	Pfam	PF14359	NA	DUF4406
UHGV-0200513_34	Structural annotation	PF14359	NA	NA
UHGV-0200513_35	eggNOG-mapper	887325.HMPREF0381_0084	Phage Mu protein F like protein	NA
UHGV-0200513_35	COG	COG2369	NA	NA
UHGV-0200513_38	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0200513_38	eggNOG-mapper	1298920.KI911353_gene4851	NA	NA
UHGV-0200513_39	PHROG	phrog_422	major head protein	head and packaging
UHGV-0200513_39	UniRef90	UniRef90_UPI0008B0AEC5	capsid protein	NA
UHGV-0200513_39	eggNOG-mapper	742740.HMPREF9474_03505	NA	NA
UHGV-0200513_39	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0200513_40	PHROG	phrog_1378	NA	unknown function
UHGV-0200513_40	UniRef90	UniRef90_A0A0B3VH35	HALZ domain-containing protein	NA
UHGV-0200513_40	eggNOG-mapper	1415775.U729_2606	NA	NA
UHGV-0200513_41	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0200513_41	eggNOG-mapper	742740.HMPREF9474_03507	NA	NA
UHGV-0200513_42	PHROG	phrog_8710	NA	unknown function
UHGV-0200513_42	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0200513_42	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0200513_43	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0200513_43	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0200513_44	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0200513_44	UniRef90	UniRef90_UPI00164BAA81	minor capsid protein	NA
UHGV-0200513_44	eggNOG-mapper	679192.HMPREF9013_1297	NA	NA
UHGV-0200513_44	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0200513_44	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0200513_45	PHROG	phrog_820	major tail protein	tail
UHGV-0200513_45	UniRef90	UniRef90_T3DDR1	Phage major tail 2 family protein	NA
UHGV-0200513_45	eggNOG-mapper	1151292.QEW_2426	NA	NA
UHGV-0200513_45	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0200513_46	PHROG	phrog_8300	NA	unknown function
UHGV-0200513_46	eggNOG-mapper	1151292.QEW_2425	NA	NA
UHGV-0200513_46	Structural annotation	PF06896	NA	NA
UHGV-0200513_47	PHROG	phrog_8355	NA	unknown function
UHGV-0200513_47	UniRef90	UniRef90_UPI0006BBA9AA	Gp15 family bacteriophage protein	NA
UHGV-0200513_47	eggNOG-mapper	394503.Ccel_3283	Bacteriophage Gp15 protein	NA
UHGV-0200513_47	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0200513_47	Structural annotation	PF06854	NA	NA
UHGV-0200513_48	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0200513_48	UniRef90	UniRef90_A0A1C6JZ05	Phage-related protein	NA
UHGV-0200513_48	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0200513_48	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0200513_48	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0200513_49	PHROG	phrog_1194	NA	unknown function
UHGV-0200513_49	eggNOG-mapper	742733.HMPREF9469_01808	NA	NA
UHGV-0200513_49	Pfam	PF20458	NA	DUF6711
UHGV-0200513_49	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0200513_50	PHROG	phrog_18190	NA	unknown function
UHGV-0200513_50	UniRef90	UniRef90_A0A413Z640	Peptidase S74 domain-containing protein	NA
UHGV-0200513_50	eggNOG-mapper	1235790.C805_00089	NA	NA
UHGV-0200513_50	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0200513_51	PHROG	phrog_17196	kinase	other
UHGV-0200513_51	UniRef90	UniRef90_A0A3R6GQJ1	Peptidase S74 domain-containing protein	NA
UHGV-0200513_51	eggNOG-mapper	1235790.C805_00090	NA	NA
UHGV-0200513_52	PHROG	phrog_199	holin	lysis
UHGV-0200513_52	UniRef90	UniRef90_A0A356C4Q2	Holin	NA
UHGV-0200513_52	eggNOG-mapper	483218.BACPEC_01140	Bacteriophage holin family	NA
UHGV-0200513_52	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0200513_52	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0200513_52	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0200513_52	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0200513_53	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0200513_53	PHROG	phrog_435	endolysin	lysis
UHGV-0200513_53	UniRef90	UniRef90_A0A844DYE7	MurNAc-LAA domain-containing protein	NA
UHGV-0200513_53	eggNOG-mapper	1408437.JNJN01000039_gene391	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0200513_53	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0200513_53	Pfam	PF13946	NA	DUF4214
UHGV-0200513_53	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0200513_53	Structural annotation	PF01520, PF13946, MF_00417, TIGR02883, COG0860	NA	NA
UHGV-0200513_54	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0200513_54	UniRef90	UniRef90_A0A1H3VXF8	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0200513_54	eggNOG-mapper	1408311.JNJM01000002_gene1308	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0200513_54	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0200513_54	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0200513_54	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0200513_55	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0200513_55	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0200513_55	UniRef90	UniRef90_A0A413P9Z2	HicB family protein	NA
UHGV-0200513_55	eggNOG-mapper	1410612.JNKO01000006_gene1220	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0200513_55	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0200513_55	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0200513_55	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0200513_56	KOfam	K01867	WARS, trpS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]	NA
UHGV-0200513_56	PHROG	phrog_37857	NA	unknown function
UHGV-0200513_56	UniRef90	UniRef90_A0A356C6P6	Tryptophan--tRNA ligase	NA
UHGV-0200513_56	eggNOG-mapper	515620.EUBELI_01335	NA	NA
UHGV-0200513_56	Pfam	PF00579	tRNA synthetases class I (W and Y)	tRNA-synt_1b
UHGV-0200513_56	NCBIFam	TIGR00233.1	tryptophan--tRNA ligase	NA
UHGV-0200513_56	COG	COG0180	Tryptophanyl-tRNA synthetase	NA
UHGV-0200513_56	Structural annotation	PF00579, MF_00140_B, NF008922, COG0180	NA	NA
UHGV-0200513_57	KOfam	K07404	pgl; 6-phosphogluconolactonase [EC:3.1.1.31]	NA
UHGV-0200513_57	UniRef90	UniRef90_A0A7X7RPU9	Beta-propeller fold lactonase family protein	NA
UHGV-0200513_57	eggNOG-mapper	515620.EUBELI_01332	Lactonase, 7-bladed beta-propeller	NA
UHGV-0200513_57	Pfam	PF10282	Lactonase, 7-bladed beta-propeller	Lactonase
UHGV-0200513_57	COG	COG2706	6-phosphogluconolactonase, cycloisomerase 2 family	NA