UHGV-0200674

Genome information

Genome length 24,853 bps

CDS count 28

Completeness 51.33% (medium-quality)

geNomad score 0.9641

Prediction confidence Confident

Genome information
Genome ID	UHGV-0200674
vOTU ID	vOTU-023262
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN06164788_a1_ct7047_vs1@linear@Siphoviridae__sp._cti4S1
BioSample	SAMN06164788
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.33% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9641
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.49
Jumbo phage	No

Genome content
Genome length	24,853 bps
GC content	53.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	28
CDS density	95.57%
Average CDS length	849.96 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0200674_2	Structural annotation	PF20387	NA	NA
UHGV-0200674_3	PHROG	phrog_14242	major head protein	head and packaging
UHGV-0200674_3	UniRef90	UniRef90_A0A2V2ERA1	Phage major capsid protein	NA
UHGV-0200674_3	eggNOG-mapper	588581.Cpap_1528	NA	NA
UHGV-0200674_3	NCBIFam	NF033394.1	phage major capsid protein	NA
UHGV-0200674_3	Structural annotation	PF17236, MF_04133, NF033394, COG4653	NA	NA
UHGV-0200674_4	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-0200674_5	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0200674_5	PHROG	phrog_95	integrase	integration and excision
UHGV-0200674_5	UniRef90	UniRef90_UPI000F54A9FB	recombinase family protein	NA
UHGV-0200674_5	eggNOG-mapper	935837.JAEK01000027_gene1624	Resolvase, N terminal domain	NA
UHGV-0200674_5	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0200674_5	Pfam	PF07508	Recombinase	Recombinase
UHGV-0200674_5	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0200674_5	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0200674_5	Structural annotation	PF00239, PF07508, PF18822, NF041201, COG1961	NA	NA
UHGV-0200674_6	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0200674_6	PHROG	phrog_95	integrase	integration and excision
UHGV-0200674_6	UniRef90	UniRef90_UPI0010A5F732	recombinase family protein	NA
UHGV-0200674_6	eggNOG-mapper	1410633.JHWR01000012_gene107	Recombinase	NA
UHGV-0200674_6	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0200674_6	Pfam	PF07508	Recombinase	Recombinase
UHGV-0200674_6	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0200674_6	Structural annotation	PF07508, PF00239, PF10944, NF041201, COG1961	NA	NA
UHGV-0200674_7	Pfam	PF20612	SHOCT domain	SHOCT_2
UHGV-0200674_8	PHROG	phrog_1129	holin	lysis
UHGV-0200674_8	UniRef90	UniRef90_A0A1G6ETY7	Phage holin family Hol44, holin superfamily V	NA
UHGV-0200674_8	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0200674_8	Structural annotation	PF06946	NA	NA
UHGV-0200674_9	UniRef90	UniRef90_A0A1Q6MD24	Branched-chain amino acid ABC transporter permease	NA
UHGV-0200674_9	eggNOG-mapper	742740.HMPREF9474_03521	NA	NA
UHGV-0200674_10	PHROG	phrog_1401	NA	unknown function
UHGV-0200674_10	Structural annotation	PF07761	NA	NA
UHGV-0200674_12	PHROG	phrog_1899	NA	unknown function
UHGV-0200674_12	eggNOG-mapper	1415775.U729_3142	NA	NA
UHGV-0200674_12	Pfam	PF07902	gp58-like protein	Gp58
UHGV-0200674_12	COG	COG4926	Phage-related protein	NA
UHGV-0200674_13	PHROG	phrog_3267	tail protein	tail
UHGV-0200674_13	UniRef90	UniRef90_R9C033	YkqB	NA
UHGV-0200674_13	eggNOG-mapper	207656.S6BUV4_9CAUD	NA	NA
UHGV-0200674_13	Structural annotation	PF02010, MF_04116, NF010681, COG1361	NA	NA
UHGV-0200674_14	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0200674_14	UniRef90	UniRef90_UPI001F477F79	phage tail protein	NA
UHGV-0200674_14	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0200674_14	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0200674_14	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0200674_14	COG	COG4926	Phage-related protein	NA
UHGV-0200674_14	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0200674_15	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0200674_15	UniRef90	UniRef90_A0A224AT67	Phage tail component	NA
UHGV-0200674_15	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0200674_15	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0200674_15	COG	COG4722	Phage-related protein YomH	NA
UHGV-0200674_15	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0200674_16	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0200674_16	UniRef90	UniRef90_A0A6N2WL21	Chromosome partition protein Smc	NA
UHGV-0200674_16	eggNOG-mapper	665950.HMPREF1025_02680	Phage-related minor tail protein	NA
UHGV-0200674_16	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0200674_16	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0200674_16	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0200674_17	PHROG	phrog_10988	NA	unknown function
UHGV-0200674_17	eggNOG-mapper	573061.Clocel_3968	NA	NA
UHGV-0200674_18	PHROG	phrog_2115	tail protein	tail
UHGV-0200674_18	eggNOG-mapper	1499680.CCFE01000031_gene3752	NA	NA
UHGV-0200674_18	Structural annotation	PF11836	NA	NA
UHGV-0200674_19	PHROG	phrog_88	major tail protein	tail
UHGV-0200674_19	UniRef90	UniRef90_A0A224B030	Phi13 family phage major tail protein	NA
UHGV-0200674_19	eggNOG-mapper	1216932.CM240_0623	phage major tail protein, phi13 family	NA
UHGV-0200674_19	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0200674_19	COG	COG5492	NA	NA
UHGV-0200674_19	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0200674_20	PHROG	phrog_78	tail terminator	connector
UHGV-0200674_20	eggNOG-mapper	1235835.C814_01280	NA	NA
UHGV-0200674_20	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0200674_21	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0200674_21	UniRef90	UniRef90_A0A410PTP7	HK97 gp10 family phage protein	NA
UHGV-0200674_21	eggNOG-mapper	1286171.EAL2_c05930	TIGRFAM phage protein, HK97 gp10 family	NA
UHGV-0200674_21	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0200674_21	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0200674_21	Structural annotation	TIGR01725	NA	NA
UHGV-0200674_22	UniRef90	UniRef90_A0A374AY11	Head-tail adaptor protein	NA
UHGV-0200674_22	eggNOG-mapper	1120978.KB894083_gene903	Phage head-tail joining protein	NA
UHGV-0200674_22	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0200674_22	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0200674_22	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0200674_23	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0200674_23	UniRef90	UniRef90_A0A3D2HPI9	Phage gp6-like head-tail connector protein	NA
UHGV-0200674_23	eggNOG-mapper	665950.HMPREF1025_02654	NA	NA
UHGV-0200674_23	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0200674_23	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0200674_23	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0200674_24	PHROG	phrog_10	major head protein	head and packaging
UHGV-0200674_24	UniRef90	UniRef90_UPI001F466B0A	phage major capsid protein	NA
UHGV-0200674_24	eggNOG-mapper	1120978.KB894083_gene906	Phage capsid family	NA
UHGV-0200674_24	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0200674_24	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0200674_24	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0200674_24	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0200674_25	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0200674_25	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0200674_25	UniRef90	UniRef90_UPI00068A0CA1	Clp protease ClpP	NA
UHGV-0200674_25	eggNOG-mapper	1408415.JHXL01000001_gene390	serine-type endopeptidase activity	NA
UHGV-0200674_25	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0200674_25	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0200674_25	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0200674_26	PHROG	phrog_12	portal protein	head and packaging
UHGV-0200674_26	UniRef90	UniRef90_A0A1E3BX67	Phage portal protein	NA
UHGV-0200674_26	eggNOG-mapper	665950.HMPREF1025_02651	Phage portal protein	NA
UHGV-0200674_26	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0200674_26	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0200674_26	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0200674_26	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0200674_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0200674_27	UniRef90	UniRef90_UPI000B7FA7CC	terminase large subunit	NA
UHGV-0200674_27	eggNOG-mapper	742741.HMPREF9475_02377	Phage Terminase	NA
UHGV-0200674_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0200674_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0200674_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0200674_27	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA