UHGV-0200749

Genome information

vOTU vOTU-021900

Genome length 27,898 bps

CDS count 41

Completeness 73.03% (medium-quality)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-0200749
vOTU ID	vOTU-021900
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN05414935_a1_ct7735_vs1@Siphoviridae__sp._ctrxG1
BioSample	SAMN05414935
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.03% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.26
Jumbo phage	No

Genome content
Genome length	27,898 bps
GC content	60.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	90.72%
Average CDS length	621.59 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0200749_1	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0200749_2	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0200749_2	UniRef90	UniRef90_UPI001C01DF91	helix-turn-helix transcriptional regulator	NA
UHGV-0200749_2	eggNOG-mapper	1226322.HMPREF1545_00092	Helix-turn-helix XRE-family like proteins	NA
UHGV-0200749_2	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0200749_2	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0200749_2	Structural annotation	PF01381, NF040522, COG1476	NA	NA
UHGV-0200749_3	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0200749_4	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0200749_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0200749_4	UniRef90	UniRef90_UPI00030EB95F	helix-turn-helix domain-containing protein	NA
UHGV-0200749_4	eggNOG-mapper	1007096.BAGW01000011_gene2356	sequence-specific DNA binding	NA
UHGV-0200749_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0200749_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0200749_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0200749_5	UniRef90	UniRef90_A0A096AZX4	HTH cro/C1-type domain-containing protein	NA
UHGV-0200749_5	eggNOG-mapper	742738.HMPREF9460_04038	sequence-specific DNA binding	NA
UHGV-0200749_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0200749_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0200749_5	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0200749_7	eggNOG-mapper	742741.HMPREF9475_00398	NA	NA
UHGV-0200749_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0200749_8	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0200749_8	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0200749_9	KOfam	K14059	int; integrase	NA
UHGV-0200749_9	PHROG	phrog_1	integrase	integration and excision
UHGV-0200749_9	UniRef90	UniRef90_A0A1H8A220	Site-specific recombinase XerD	NA
UHGV-0200749_9	eggNOG-mapper	693746.OBV_01970	Phage integrase family	NA
UHGV-0200749_9	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0200749_9	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0200749_9	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0200749_9	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0200749_10	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0200749_12	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0200749_16	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0200749_16	PHROG	phrog_894	endolysin	lysis
UHGV-0200749_16	UniRef90	UniRef90_K1TJK4	Peptidase_M15_3 domain-containing protein (Fragment)	NA
UHGV-0200749_16	eggNOG-mapper	1235797.C816_04171	Peptidase M15	NA
UHGV-0200749_16	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0200749_16	COG	COG3108	NA	NA
UHGV-0200749_16	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0200749_17	PHROG	phrog_18955	NA	unknown function
UHGV-0200749_17	UniRef90	UniRef90_UPI00164D2830	phosphodiester glycosidase family protein	NA
UHGV-0200749_17	eggNOG-mapper	696369.KI912183_gene2044	exopolysaccharide biosynthesis protein	NA
UHGV-0200749_17	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0200749_17	COG	COG4632	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	NA
UHGV-0200749_17	Structural annotation	PF09992, COG4632	NA	NA
UHGV-0200749_19	PHROG	phrog_13256	NA	unknown function
UHGV-0200749_19	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0200749_20	PHROG	phrog_4105	NA	unknown function
UHGV-0200749_20	eggNOG-mapper	428125.CLOLEP_01431	NA	NA
UHGV-0200749_22	PHROG	phrog_13589	NA	unknown function
UHGV-0200749_22	eggNOG-mapper	428125.CLOLEP_01434	NA	NA
UHGV-0200749_23	PHROG	phrog_31538	NA	unknown function
UHGV-0200749_24	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0200749_25	Structural annotation	PF03426, NF033675	NA	NA
UHGV-0200749_26	PHROG	phrog_32744	NA	unknown function
UHGV-0200749_26	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0200749_26	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0200749_28	PHROG	phrog_23464	NA	unknown function
UHGV-0200749_28	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-0200749_28	COG	COG5412	Phage-related protein	NA
UHGV-0200749_28	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0200749_30	PHROG	phrog_88	major tail protein	tail
UHGV-0200749_30	UniRef90	UniRef90_R5EB96	Phage major tail protein phi13 family	NA
UHGV-0200749_30	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0200749_31	UniRef90	UniRef90_R5IIS5	HK97 gp10 family phage protein	NA
UHGV-0200749_31	eggNOG-mapper	1203606.HMPREF1526_00974	NA	NA
UHGV-0200749_31	Structural annotation	TIGR01725	NA	NA
UHGV-0200749_32	UniRef90	UniRef90_A0A4S2AEF8	Phage tail protein	NA
UHGV-0200749_32	eggNOG-mapper	1203606.HMPREF1526_00975	NA	NA
UHGV-0200749_32	Structural annotation	PF05657	NA	NA
UHGV-0200749_33	PHROG	phrog_25	head closure Hc1	connector
UHGV-0200749_33	UniRef90	UniRef90_UPI001898DBDF	phage head closure protein	NA
UHGV-0200749_33	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0200749_33	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0200749_33	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0200749_33	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0200749_34	UniRef90	UniRef90_UPI001C018007	head-tail connector protein	NA
UHGV-0200749_34	eggNOG-mapper	742738.HMPREF9460_00878	NA	NA
UHGV-0200749_34	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0200749_34	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0200749_35	PHROG	phrog_10	major head protein	head and packaging
UHGV-0200749_35	UniRef90	UniRef90_UPI000B37FFEF	phage major capsid protein	NA
UHGV-0200749_35	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0200749_35	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0200749_35	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0200749_35	Structural annotation	PF05065, PF14182, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0200749_36	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0200749_36	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0200749_36	UniRef90	UniRef90_UPI00124513AA	Clp protease ClpP	NA
UHGV-0200749_36	eggNOG-mapper	557436.Lreu_1115	Belongs to the peptidase S14 family	NA
UHGV-0200749_36	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0200749_36	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0200749_36	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0200749_37	PHROG	phrog_12	portal protein	head and packaging
UHGV-0200749_37	UniRef90	UniRef90_UPI001958B72F	phage portal protein	NA
UHGV-0200749_37	eggNOG-mapper	1007103.AFHW01000142_gene1297	Phage portal protein	NA
UHGV-0200749_37	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0200749_37	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0200749_37	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0200749_37	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0200749_39	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0200749_39	UniRef90	UniRef90_A0A845R4S1	Terminase large subunit	NA
UHGV-0200749_39	eggNOG-mapper	742738.HMPREF9460_00872	Phage Terminase	NA
UHGV-0200749_39	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0200749_39	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0200749_39	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0200749_39	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0200749_40	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0200749_40	UniRef90	UniRef90_UPI001EDE2A13	phage terminase small subunit P27 family	NA
UHGV-0200749_40	eggNOG-mapper	1007096.BAGW01000012_gene2373	Phage terminase, small subunit	NA
UHGV-0200749_40	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0200749_40	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0200749_40	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0200749_40	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0200749_41	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0200749_41	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0200749_41	UniRef90	UniRef90_A0A1V5IAX9	Methyltransferase	NA
UHGV-0200749_41	eggNOG-mapper	693746.OBV_19980	DNA methylase	NA
UHGV-0200749_41	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0200749_41	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0200749_41	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0200749_41	COG	COG0863	DNA modification methylase	NA
UHGV-0200749_41	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA