UHGV-0201187

Genome information

Genome length 34,321 bps

CDS count 55

Completeness 78.45% (medium-quality)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-0201187
vOTU ID	vOTU-029427
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN09781723_a1_ct65660_vs1@Siphoviridae__sp._ctq661
BioSample	SAMN09781723
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.45% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.45
Jumbo phage	No

Genome content
Genome length	34,321 bps
GC content	48.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	90.11%
Average CDS length	564.93 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0201187_2	KOfam	K19370	DNAJC22; DnaJ homolog subfamily C member 22	NA
UHGV-0201187_2	PHROG	phrog_10292	NA	unknown function
UHGV-0201187_2	UniRef90	UniRef90_A0A1Q6KIC5	TM2 domain-containing protein	NA
UHGV-0201187_2	eggNOG-mapper	665956.HMPREF1032_00562	TM2 domain	NA
UHGV-0201187_2	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0201187_2	Pfam	PF05154	TM2 domain	TM2
UHGV-0201187_2	COG	COG2314	NA	NA
UHGV-0201187_3	KOfam	K14059	int; integrase	NA
UHGV-0201187_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0201187_3	UniRef90	UniRef90_UPI00164C6C3A	site-specific integrase	NA
UHGV-0201187_3	eggNOG-mapper	1280698.AUJS01000007_gene999	Phage integrase family	NA
UHGV-0201187_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0201187_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0201187_3	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0201187_6	PHROG	phrog_2329	NA	unknown function
UHGV-0201187_6	UniRef90	UniRef90_A0A1C6EQW9	SpoVT-AbrB domain-containing protein	NA
UHGV-0201187_6	eggNOG-mapper	1292035.H476_0264	NA	NA
UHGV-0201187_6	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0201187_6	Structural annotation	PF04014, NF007312, COG2336	NA	NA
UHGV-0201187_8	PHROG	phrog_14030	NA	unknown function
UHGV-0201187_8	UniRef90	UniRef90_A0A417IER1	PG_binding_1 domain-containing protein	NA
UHGV-0201187_8	eggNOG-mapper	1235793.C809_02691	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0201187_8	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0201187_8	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0201187_8	Structural annotation	PF01471, NF038080, COG3409	NA	NA
UHGV-0201187_9	eggNOG-mapper	476272.RUMHYD_01994	NA	NA
UHGV-0201187_10	PHROG	phrog_18444	NA	unknown function
UHGV-0201187_10	UniRef90	UniRef90_UPI00156E9A45	peptide chain release factor 2	NA
UHGV-0201187_10	eggNOG-mapper	1294142.CINTURNW_1043	NA	NA
UHGV-0201187_11	PHROG	phrog_6616	tail protein	tail
UHGV-0201187_11	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0201187_11	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0201187_12	PHROG	phrog_1194	NA	unknown function
UHGV-0201187_12	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0201187_13	KOfam	K03529	smc; chromosome segregation protein	NA
UHGV-0201187_13	PHROG	phrog_37543	NA	unknown function
UHGV-0201187_13	UniRef90	UniRef90_A0A1C5N853	Phage-related protein	NA
UHGV-0201187_13	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-0201187_13	COG	COG5412	Phage-related protein	NA
UHGV-0201187_14	PHROG	phrog_706	NA	unknown function
UHGV-0201187_14	UniRef90	UniRef90_UPI001D1485B4	bacteriophage Gp15 family protein	NA
UHGV-0201187_14	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0201187_14	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0201187_14	Structural annotation	PF06854	NA	NA
UHGV-0201187_15	PHROG	phrog_11299	NA	unknown function
UHGV-0201187_15	eggNOG-mapper	476272.RUMHYD_01783	NA	NA
UHGV-0201187_15	Structural annotation	PF10666	NA	NA
UHGV-0201187_16	PHROG	phrog_3099	NA	unknown function
UHGV-0201187_16	eggNOG-mapper	33035.JPJF01000106_gene3126	NA	NA
UHGV-0201187_16	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0201187_17	PHROG	phrog_3266	tail completion	connector
UHGV-0201187_17	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0201187_17	Structural annotation	PF12691	NA	NA
UHGV-0201187_18	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0201187_18	UniRef90	UniRef90_UPI0008B4CFF0	minor capsid protein	NA
UHGV-0201187_18	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0201187_18	Structural annotation	PF11114	NA	NA
UHGV-0201187_20	PHROG	phrog_3366	NA	unknown function
UHGV-0201187_20	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0201187_20	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0201187_21	PHROG	phrog_18218	NA	unknown function
UHGV-0201187_21	UniRef90	UniRef90_A0A8D9PGR5	Holin	NA
UHGV-0201187_21	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-0201187_21	Structural annotation	PF06946	NA	NA
UHGV-0201187_22	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0201187_22	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0201187_23	PHROG	phrog_247	major head protein	head and packaging
UHGV-0201187_23	UniRef90	UniRef90_A0A3R6K7E9	Phage coat protein	NA
UHGV-0201187_23	eggNOG-mapper	536233.CLO_0886	NA	NA
UHGV-0201187_23	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0201187_23	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0201187_23	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0201187_24	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0201187_24	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0201187_24	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0201187_26	Structural annotation	PF00210, MF_01441, NF011597, COG1528	NA	NA
UHGV-0201187_27	PHROG	phrog_20016	NA	unknown function
UHGV-0201187_27	UniRef90	UniRef90_A0A316MV88	BclA_C domain-containing protein	NA
UHGV-0201187_27	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0201187_29	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0201187_31	PHROG	phrog_21718	NA	unknown function
UHGV-0201187_31	eggNOG-mapper	1235790.C805_00058	NA	NA
UHGV-0201187_34	UniRef90	UniRef90_A0A417UWY7	CTP synthase	NA
UHGV-0201187_34	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0201187_35	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0201187_35	UniRef90	UniRef90_A0A1C6CDG2	Phage minor capsid protein 2	NA
UHGV-0201187_35	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0201187_35	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0201187_35	COG	COG2369	NA	NA
UHGV-0201187_35	Structural annotation	PF06152	NA	NA
UHGV-0201187_36	PHROG	phrog_533	portal protein	head and packaging
UHGV-0201187_36	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0201187_36	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0201187_36	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0201187_37	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0201187_37	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0201187_37	UniRef90	UniRef90_A0A416S378	PBSX family phage terminase large subunit	NA
UHGV-0201187_37	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0201187_37	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0201187_37	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0201187_37	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0201187_37	COG	COG1783	Phage terminase large subunit	NA
UHGV-0201187_37	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0201187_39	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0201187_39	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0201187_39	UniRef90	UniRef90_A0A2S0KPA3	Chromosome partitioning protein ParB	NA
UHGV-0201187_39	eggNOG-mapper	1232449.BAHV02000018_gene1534	NA	NA
UHGV-0201187_39	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0201187_39	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0201187_39	Pfam	PF14386	NA	DUF4417
UHGV-0201187_39	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0201187_39	Structural annotation	PF14386, PF02195, TIGR00180	NA	NA
UHGV-0201187_43	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0201187_43	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0201187_43	UniRef90	UniRef90_UPI0018C4DCA4	Lar family restriction alleviation protein	NA
UHGV-0201187_43	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0201187_43	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0201187_43	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0201187_43	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0201187_44	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0201187_44	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0201187_44	UniRef90	UniRef90_A0A7X2XHM6	Restriction alleviation protein, Lar family	NA
UHGV-0201187_44	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0201187_44	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0201187_44	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0201187_44	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0201187_45	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0201187_45	UniRef90	UniRef90_UPI001BBBA8BA	NA	NA
UHGV-0201187_45	eggNOG-mapper	1321782.HMPREF1986_02257	NA	NA
UHGV-0201187_45	Pfam	PF14359	NA	DUF4406
UHGV-0201187_45	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-0201187_47	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0201187_47	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0201187_47	UniRef90	UniRef90_R5G2U2	Adenylylsulfate reductase thioredoxin dependent	NA
UHGV-0201187_47	eggNOG-mapper	411490.ANACAC_02386	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0201187_47	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0201187_47	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0201187_47	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0201187_50	eggNOG-mapper	1235790.C805_00035	NA	NA
UHGV-0201187_51	PHROG	phrog_419	NA	unknown function
UHGV-0201187_51	UniRef90	UniRef90_A0A4U9RIR3	NA	NA
UHGV-0201187_51	eggNOG-mapper	476272.RUMHYD_03324	NA	NA
UHGV-0201187_51	Structural annotation	PF14083	NA	NA
UHGV-0201187_52	PHROG	phrog_874	NA	unknown function
UHGV-0201187_52	UniRef90	UniRef90_A0A4P6LRJ9	ASCH domain-containing protein	NA
UHGV-0201187_52	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0201187_52	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0201187_54	PHROG	phrog_20593	NA	unknown function
UHGV-0201187_54	UniRef90	UniRef90_UPI001654E08C	NA	NA