UHGV-0201267

Genome information

vOTU vOTU-021968

Genome length 17,226 bps

CDS count 22

Completeness 88.15% (medium-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-0201267
vOTU ID	vOTU-021968
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN05827149_a1_ct3934_vs1@linear@Podoviridae__sp._ctNMP1
BioSample	SAMN05827149
Country	Estonia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.15% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.2
Jumbo phage	No

Genome content
Genome length	17,226 bps
GC content	40.15%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	22
CDS density	97.24%
Average CDS length	766.09 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0201267_2	PHROG	phrog_26145	NA	unknown function
UHGV-0201267_2	UniRef90	UniRef90_Q37988	Terminal protein	NA
UHGV-0201267_3	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0201267_3	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0201267_3	UniRef90	UniRef90_Q37989	DNA polymerase	NA
UHGV-0201267_3	eggNOG-mapper	10747.DPOL_BPCP1	nucleotide binding	NA
UHGV-0201267_3	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0201267_3	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0201267_4	PHROG	phrog_26305	NA	unknown function
UHGV-0201267_5	PHROG	phrog_22891	NA	unknown function
UHGV-0201267_5	Structural annotation	PF21265, MF_04153	NA	NA
UHGV-0201267_6	PHROG	phrog_25389	NA	unknown function
UHGV-0201267_6	UniRef90	UniRef90_Q37992	Possible scaffolding protein	NA
UHGV-0201267_8	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0201267_8	UniRef90	UniRef90_Q37993	Major capsid protein	NA
UHGV-0201267_8	eggNOG-mapper	1498213.A0A0B4MZH3_BPCP1	T=13 icosahedral viral capsid	NA
UHGV-0201267_8	Structural annotation	PF21703, MF_04119, TIGR04387, COG1659	NA	NA
UHGV-0201267_9	PHROG	phrog_2038	upper collar connector	connector
UHGV-0201267_9	UniRef90	UniRef90_A0A0B4MYX5	Connector protein	NA
UHGV-0201267_9	eggNOG-mapper	10747.Q37995_BPCP1	Phage Connector (GP10)	NA
UHGV-0201267_9	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0201267_9	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0201267_10	PHROG	phrog_26520	lower collar	tail
UHGV-0201267_10	UniRef90	UniRef90_Q37996	Collar protein	NA
UHGV-0201267_11	PHROG	phrog_27791	NA	unknown function
UHGV-0201267_12	PHROG	phrog_23584	NA	unknown function
UHGV-0201267_12	Structural annotation	NF011128, COG2868	NA	NA
UHGV-0201267_13	PHROG	phrog_35592	NA	unknown function
UHGV-0201267_14	PHROG	phrog_17155	NA	unknown function
UHGV-0201267_14	UniRef90	UniRef90_Q38000	Orf15 protein	NA
UHGV-0201267_14	eggNOG-mapper	1158612.I580_02491	NA	NA
UHGV-0201267_15	PHROG	phrog_15030	NA	unknown function
UHGV-0201267_15	eggNOG-mapper	10747.Q38002_BPCP1	NA	NA
UHGV-0201267_15	Structural annotation	PF18220, COG2967	NA	NA
UHGV-0201267_16	PHROG	phrog_30532	tail protein	tail
UHGV-0201267_16	UniRef90	UniRef90_A0A0B4MZC4	Tail protein	NA
UHGV-0201267_16	eggNOG-mapper	1498213.A0A0B4MZC4_BPCP1	NA	NA
UHGV-0201267_16	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0201267_16	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0201267_17	PHROG	phrog_2248	tail protein	tail
UHGV-0201267_17	UniRef90	UniRef90_Q38005	Tail protein	NA
UHGV-0201267_17	eggNOG-mapper	936154.STP_1284	NA	NA
UHGV-0201267_17	Pfam	PF05257	CHAP domain	CHAP
UHGV-0201267_17	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0201267_17	COG	COG4926	Phage-related protein	NA
UHGV-0201267_17	Structural annotation	PF20934, NF011238, COG3942	NA	NA
UHGV-0201267_18	PHROG	phrog_2150	terminase	head and packaging
UHGV-0201267_18	UniRef90	UniRef90_Q38007	Encapsidation protein	NA
UHGV-0201267_18	eggNOG-mapper	10747.Q38007_BPCP1	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0201267_18	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0201267_18	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0201267_19	PHROG	phrog_199	holin	lysis
UHGV-0201267_19	UniRef90	UniRef90_Q38008	Holin	NA
UHGV-0201267_19	eggNOG-mapper	10747.VLYS_BPCP1	Pfam:Phage_holin_4_1	NA
UHGV-0201267_19	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0201267_19	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0201267_19	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0201267_20	KOfam	K07273	acm; lysozyme	NA
UHGV-0201267_20	PHROG	phrog_6745	endolysin	lysis
UHGV-0201267_20	UniRef90	UniRef90_P15057	Lysozyme	NA
UHGV-0201267_20	eggNOG-mapper	10747.LYS_BPCP1	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0201267_20	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0201267_20	Pfam	PF01473	Putative cell wall binding repeat	Choline_bind_1
UHGV-0201267_20	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0201267_20	Structural annotation	PF01183, PF19127, TIGR04035, COG5263, COG3757	NA	NA