UHGV-0201368

Genome information

vOTU vOTU-019692

Genome length 27,199 bps

CDS count 48

Completeness 77.33% (medium-quality)

geNomad score 0.9781

Prediction confidence Confident

Genome information
Genome ID	UHGV-0201368
vOTU ID	vOTU-019692
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN06164875_a1_ct3847_vs1@linear@Siphoviridae__sp._ctCRw1
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.33% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9781
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.56
Jumbo phage	No

Genome content
Genome length	27,199 bps
GC content	46.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	94.97%
Average CDS length	543.19 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0201368_1	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0201368_1	UniRef90	UniRef90_A0A374BV79	PhageMin_Tail domain-containing protein	NA
UHGV-0201368_1	eggNOG-mapper	573061.Clocel_3533	tail tape measure protein	NA
UHGV-0201368_1	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0201368_1	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0201368_1	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0201368_2	PHROG	phrog_706	NA	unknown function
UHGV-0201368_2	UniRef90	UniRef90_UPI0011DD2DB5	Gp15 family bacteriophage protein	NA
UHGV-0201368_2	eggNOG-mapper	1238184.CM001792_gene103	Bacteriophage Gp15 protein	NA
UHGV-0201368_2	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0201368_2	Structural annotation	PF06854	NA	NA
UHGV-0201368_4	PHROG	phrog_820	major tail protein	tail
UHGV-0201368_4	UniRef90	UniRef90_A0A3R6YSE8	Capsid protein	NA
UHGV-0201368_4	eggNOG-mapper	665959.HMPREF1013_00194	domain, Protein	NA
UHGV-0201368_4	COG	COG5492	NA	NA
UHGV-0201368_4	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0201368_5	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0201368_5	UniRef90	UniRef90_UPI001D058B7D	minor capsid protein	NA
UHGV-0201368_5	Structural annotation	PF12691	NA	NA
UHGV-0201368_6	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0201368_6	UniRef90	UniRef90_UPI001D4A767B	minor capsid protein	NA
UHGV-0201368_6	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0201368_6	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0201368_7	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0201368_7	UniRef90	UniRef90_UPI00093A08E9	putative minor capsid protein	NA
UHGV-0201368_7	eggNOG-mapper	1231057.AMGD01000018_gene3616	Minor capsid protein	NA
UHGV-0201368_7	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0201368_7	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-0201368_7	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0201368_8	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0201368_8	UniRef90	UniRef90_R5RS10	Protein gp8	NA
UHGV-0201368_8	eggNOG-mapper	1234679.BN424_2139	NA	NA
UHGV-0201368_9	PHROG	phrog_267	major head protein	head and packaging
UHGV-0201368_9	UniRef90	UniRef90_A0A1C6GMA6	S-l_SbsC_C domain-containing protein	NA
UHGV-0201368_9	eggNOG-mapper	718252.FP2_06660	NA	NA
UHGV-0201368_9	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0201368_10	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0201368_10	eggNOG-mapper	1391647.AVSV01000003_gene1807	NA	NA
UHGV-0201368_11	KOfam	K07584	NA	NA
UHGV-0201368_11	PHROG	phrog_4478	peptidase	other
UHGV-0201368_11	UniRef90	UniRef90_A0A2Z4UEY6	Ribosomal-processing cysteine protease Prp	NA
UHGV-0201368_11	eggNOG-mapper	476272.RUMHYD_02852	Cysteine protease Prp	NA
UHGV-0201368_11	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0201368_11	COG	COG2868	NA	NA
UHGV-0201368_11	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0201368_12	PHROG	phrog_15041	NA	unknown function
UHGV-0201368_12	eggNOG-mapper	1304866.K413DRAFT_0808	NA	NA
UHGV-0201368_12	Structural annotation	PF10827	NA	NA
UHGV-0201368_13	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0201368_13	UniRef90	UniRef90_UPI00191552C0	phage minor capsid protein	NA
UHGV-0201368_13	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0201368_13	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0201368_13	COG	COG2369	NA	NA
UHGV-0201368_13	Structural annotation	PF06152, PF15529	NA	NA
UHGV-0201368_14	PHROG	phrog_533	portal protein	head and packaging
UHGV-0201368_14	UniRef90	UniRef90_UPI001915E72C	phage portal protein	NA
UHGV-0201368_14	eggNOG-mapper	1120998.AUFC01000030_gene2232	NA	NA
UHGV-0201368_14	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0201368_14	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0201368_15	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0201368_15	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0201368_15	UniRef90	UniRef90_A0A3R6UPU9	PBSX family phage terminase large subunit	NA
UHGV-0201368_15	eggNOG-mapper	592031.GCWU000322_00074	Phage terminase large subunit	NA
UHGV-0201368_15	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0201368_15	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0201368_15	COG	COG1783	Phage terminase large subunit	NA
UHGV-0201368_15	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0201368_16	PHROG	phrog_2412	NA	unknown function
UHGV-0201368_16	UniRef90	UniRef90_A0A4V1EFZ3	NA	NA
UHGV-0201368_16	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-0201368_17	PHROG	phrog_7121	tail fiber protein	tail
UHGV-0201368_17	eggNOG-mapper	411464.DESPIG_00760	tail collar domain protein	NA
UHGV-0201368_17	COG	COG4675	Phage tail collar domain	NA
UHGV-0201368_18	Structural annotation	PF07703, NF038114, COG5501	NA	NA
UHGV-0201368_19	UniRef90	UniRef90_UPI000680D86D	PF13754 domain-containing protein	NA
UHGV-0201368_19	Pfam	PF13754	NA	Big_3_4
UHGV-0201368_19	Structural annotation	PF13754	NA	NA
UHGV-0201368_20	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0201368_20	PHROG	phrog_11157	NA	unknown function
UHGV-0201368_20	UniRef90	UniRef90_A0A174LMA6	Bacillopeptidase F	NA
UHGV-0201368_20	eggNOG-mapper	1304866.K413DRAFT_0771	NA	NA
UHGV-0201368_20	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0201368_20	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0201368_20	NCBIFam	NF033510.3	Ca2+-stabilized repeat-containing adhesin	NA
UHGV-0201368_20	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0201368_20	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0201368_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0201368_22	PHROG	phrog_19680	NA	unknown function
UHGV-0201368_22	UniRef90	UniRef90_UPI001E45D411	NA	NA
UHGV-0201368_22	eggNOG-mapper	1094496.m07a_07920	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0201368_22	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0201368_22	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0201368_25	PHROG	phrog_2945	NA	unknown function
UHGV-0201368_26	PHROG	phrog_9958	NA	unknown function
UHGV-0201368_26	UniRef90	UniRef90_W0U729	NA	NA
UHGV-0201368_26	eggNOG-mapper	1160721.RBI_I01591	NA	NA
UHGV-0201368_26	Pfam	PF19789	NA	DUF6273
UHGV-0201368_26	Structural annotation	PF19789	NA	NA
UHGV-0201368_28	Structural annotation	PF19524	NA	NA
UHGV-0201368_29	UniRef90	UniRef90_UPI0013ECC8D4	NA	NA
UHGV-0201368_29	eggNOG-mapper	1121094.KB894651_gene1618	NA	NA
UHGV-0201368_29	Pfam	PF12989	NA	DUF3873
UHGV-0201368_31	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0201368_31	UniRef90	UniRef90_A0A349YFI2	DNA cytosine methyltransferase	NA
UHGV-0201368_31	eggNOG-mapper	1095750.HMPREF9970_0173	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0201368_31	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0201368_31	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0201368_32	PHROG	phrog_7713	NA	unknown function
UHGV-0201368_32	UniRef90	UniRef90_UPI001A9A2CBD	pentapeptide repeat-containing protein	NA
UHGV-0201368_32	eggNOG-mapper	768710.DesyoDRAFT_5248	Pentapeptide repeats (8 copies)	NA
UHGV-0201368_32	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0201368_32	COG	COG1357	NA	NA
UHGV-0201368_32	Structural annotation	PF00805	NA	NA
UHGV-0201368_33	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0201368_33	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0201368_33	UniRef90	UniRef90_A0A3D2CNF7	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0201368_33	eggNOG-mapper	397291.C804_05723	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0201368_33	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0201368_33	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0201368_33	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0201368_34	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0201368_34	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0201368_34	UniRef90	UniRef90_A0A3N0HYL6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0201368_34	eggNOG-mapper	545697.HMPREF0216_02819	Endodeoxyribonuclease RusA	NA
UHGV-0201368_34	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0201368_34	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0201368_34	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0201368_36	PHROG	phrog_1408	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0201368_36	UniRef90	UniRef90_UPI001A9037AF	replisome organizer	NA
UHGV-0201368_36	eggNOG-mapper	632292.Calhy_0413	NA	NA
UHGV-0201368_36	Structural annotation	PF01475, MF_01819, NF006999, COG0735	NA	NA
UHGV-0201368_37	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0201368_37	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0201368_37	UniRef90	UniRef90_A0A2V2CQ20	Single-stranded DNA-binding protein	NA
UHGV-0201368_37	eggNOG-mapper	699246.HMPREF0868_1385	Single-strand binding protein family	NA
UHGV-0201368_37	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0201368_37	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0201368_37	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0201368_37	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0201368_37	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0201368_38	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0201368_38	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0201368_38	UniRef90	UniRef90_A0A3D3Y007	Recombinase RecT	NA
UHGV-0201368_38	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0201368_38	Pfam	PF03837	RecT family	RecT
UHGV-0201368_38	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0201368_38	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0201368_38	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0201368_39	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0201368_39	UniRef90	UniRef90_UPI001D078B74	YqaJ viral recombinase family protein	NA
UHGV-0201368_39	eggNOG-mapper	428125.CLOLEP_01823	YqaJ viral recombinase family	NA
UHGV-0201368_39	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0201368_39	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0201368_39	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0201368_39	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0201368_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0201368_43	UniRef90	UniRef90_A0A7X4ZQ93	XRE family transcriptional regulator	NA
UHGV-0201368_43	eggNOG-mapper	397290.C810_01482	Helix-turn-helix XRE-family like proteins	NA
UHGV-0201368_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0201368_43	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0201368_43	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0201368_44	UniRef90	UniRef90_A0A1C5W348	Predicted transcriptional regulator	NA
UHGV-0201368_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0201368_44	COG	COG1395	Predicted transcriptional regulator	NA
UHGV-0201368_44	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0201368_45	PHROG	phrog_2113	NA	unknown function
UHGV-0201368_45	eggNOG-mapper	1298920.KI911353_gene2059	NA	NA
UHGV-0201368_45	Pfam	PF08279	HTH domain	HTH_11
UHGV-0201368_45	Structural annotation	PF21715, TIGR00122, COG1654	NA	NA
UHGV-0201368_48	UniRef90	UniRef90_A0A316QE90	XRE family transcriptional regulator	NA
UHGV-0201368_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0201368_48	COG	COG1357	NA	NA