UHGV-0201574

Genome information

vOTU vOTU-020174

Genome length 39,600 bps

CDS count 44

Completeness 64.55% (medium-quality)

geNomad score 0.9498

Prediction confidence Confident

Genome information
Genome ID	UHGV-0201574
vOTU ID	vOTU-020174
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN00792041_a1_ct12876_vs1@linear@Siphoviridae__sp._ctXzK1
BioSample	SAMN00792041
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.55% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9498
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.19
Jumbo phage	No

Genome content
Genome length	39,600 bps
GC content	38.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	88.58%
Average CDS length	801.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0201574_1	eggNOG-mapper	1235835.C814_02168	protein targeting	NA
UHGV-0201574_1	COG	COG0653	Preprotein translocase subunit SecA (ATPase, RNA helicase)	NA
UHGV-0201574_2	KOfam	K18348	vanT; serine/alanine racemase [EC:5.1.1.18 5.1.1.1]	NA
UHGV-0201574_2	PHROG	phrog_3333	O-acetyltransferase	other
UHGV-0201574_2	UniRef90	UniRef90_A0A374N5L4	Acyltransferase	NA
UHGV-0201574_2	eggNOG-mapper	428127.EUBDOL_01882	Acyltransferase family	NA
UHGV-0201574_2	Pfam	PF01757	Acyltransferase family	Acyl_transf_3
UHGV-0201574_2	COG	COG1835	Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains	NA
UHGV-0201574_2	Structural annotation	PF01757, MF_01949, NF000033, COG3274	NA	NA
UHGV-0201574_3	PHROG	phrog_1637	NA	unknown function
UHGV-0201574_3	UniRef90	UniRef90_UPI00142F9BC2	AAA family ATPase	NA
UHGV-0201574_3	eggNOG-mapper	1410624.JNKK01000051_gene2458	nuclear chromosome segregation	NA
UHGV-0201574_3	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0201574_4	PHROG	phrog_5079	NA	unknown function
UHGV-0201574_4	eggNOG-mapper	706434.HMPREF9429_01139	NA	NA
UHGV-0201574_5	PHROG	phrog_11138	NA	unknown function
UHGV-0201574_5	UniRef90	UniRef90_A0A412DZM4	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0201574_5	eggNOG-mapper	293826.Amet_4053	DNA-templated transcription, initiation	NA
UHGV-0201574_5	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0201574_5	Structural annotation	PF08281, MF_00674, NF010500, COG2739	NA	NA
UHGV-0201574_6	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0201574_6	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0201574_6	UniRef90	UniRef90_A0A412DZE9	Phage antirepressor Ant	NA
UHGV-0201574_6	eggNOG-mapper	1216932.CM240_1409	Phage antirepressor protein	NA
UHGV-0201574_6	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0201574_6	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0201574_6	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0201574_6	Structural annotation	PF03374, PF08346, TIGR02681, COG3561, COG3645	NA	NA
UHGV-0201574_7	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0201574_7	UniRef90	UniRef90_A0A374BKI2	NA	NA
UHGV-0201574_7	eggNOG-mapper	1034347.CAHJ01000046_gene595	NA	NA
UHGV-0201574_7	Pfam	PF14359	NA	DUF4406
UHGV-0201574_7	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0201574_8	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0201574_8	PHROG	phrog_1883	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0201574_8	UniRef90	UniRef90_R6N0I4	Phage DNA polymerase	NA
UHGV-0201574_8	eggNOG-mapper	767817.Desgi_4526	Phage plasmid primase, P4	NA
UHGV-0201574_8	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0201574_8	Pfam	PF19263	NA	DUF5906
UHGV-0201574_8	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0201574_8	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0201574_8	Structural annotation	PF19263, PF08706, PF03288, PF09250, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-0201574_9	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0201574_9	UniRef90	UniRef90_R6MQ36	VRR-NUC domain-containing protein	NA
UHGV-0201574_9	eggNOG-mapper	1123311.KB904448_gene56	VRR-NUC domain protein	NA
UHGV-0201574_9	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-0201574_10	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0201574_10	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0201574_10	UniRef90	UniRef90_R6NVR5	Helicase ATP-binding domain-containing protein	NA
UHGV-0201574_10	eggNOG-mapper	1408437.JNJN01000033_gene2206	SNF2 family N-terminal domain	NA
UHGV-0201574_10	PADLOC	DpdE_00011	DpdE	DPD
UHGV-0201574_10	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0201574_10	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0201574_10	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0201574_11	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0201574_11	UniRef90	UniRef90_UPI000368796A	NA	NA
UHGV-0201574_11	eggNOG-mapper	1120978.KB894081_gene99	NA	NA
UHGV-0201574_11	Pfam	PF07374	NA	DUF1492
UHGV-0201574_11	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0201574_11	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0201574_12	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0201574_12	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0201574_12	UniRef90	UniRef90_R6MSS7	HNH endonuclease domain protein	NA
UHGV-0201574_12	eggNOG-mapper	1121334.KB911068_gene2277	HNH endonuclease	NA
UHGV-0201574_12	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0201574_12	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0201574_12	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0201574_13	PHROG	phrog_2520	gamma-glutamyl cyclotransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0201574_13	UniRef90	UniRef90_A0A412DZL1	Gamma-glutamylcyclotransferase	NA
UHGV-0201574_13	eggNOG-mapper	665956.HMPREF1032_02272	Gamma-glutamyl cyclotransferase, AIG2-like	NA
UHGV-0201574_13	Pfam	PF13772	AIG2-like family	AIG2_2
UHGV-0201574_13	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-0201574_14	PHROG	phrog_2945	NA	unknown function
UHGV-0201574_14	UniRef90	UniRef90_A0A0V8QIN0	Hydrogenase maturation protein HypF	NA
UHGV-0201574_14	eggNOG-mapper	1235802.C823_05282	NA	NA
UHGV-0201574_15	eggNOG-mapper	1208321.D104_04190	NA	NA
UHGV-0201574_17	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0201574_17	UniRef90	UniRef90_A0A374UQ81	Terminase large subunit	NA
UHGV-0201574_17	eggNOG-mapper	552396.HMPREF0863_01433	large subunit	NA
UHGV-0201574_17	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0201574_17	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0201574_17	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0201574_17	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0201574_18	PHROG	phrog_12	portal protein	head and packaging
UHGV-0201574_18	UniRef90	UniRef90_A0A3D2HSG0	Phage portal protein	NA
UHGV-0201574_18	eggNOG-mapper	665950.HMPREF1025_02651	Phage portal protein	NA
UHGV-0201574_18	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0201574_18	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0201574_18	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0201574_18	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0201574_19	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0201574_19	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0201574_19	UniRef90	UniRef90_A0A374FZB5	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0201574_19	eggNOG-mapper	1410624.JNKK01000017_gene1976	Serine dehydrogenase proteinase	NA
UHGV-0201574_19	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0201574_19	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0201574_19	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0201574_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-0201574_20	UniRef90	UniRef90_A0A3D2HQG5	Phage major capsid protein	NA
UHGV-0201574_20	eggNOG-mapper	1235802.C823_01519	Phage capsid family	NA
UHGV-0201574_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0201574_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0201574_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0201574_20	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0201574_21	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0201574_21	UniRef90	UniRef90_A0A3D2HUK1	Phage gp6-like head-tail connector protein	NA
UHGV-0201574_21	eggNOG-mapper	665950.HMPREF1025_02654	NA	NA
UHGV-0201574_21	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0201574_21	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0201574_21	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0201574_22	PHROG	phrog_25	head closure Hc1	connector
UHGV-0201574_22	UniRef90	UniRef90_R6NYG9	Putative phage head-tail adaptor	NA
UHGV-0201574_22	eggNOG-mapper	573061.Clocel_3973	head-tail	NA
UHGV-0201574_22	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0201574_22	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0201574_22	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0201574_23	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0201574_23	UniRef90	UniRef90_R6MSS6	Phage protein HK97 gp10 family	NA
UHGV-0201574_23	eggNOG-mapper	994573.T472_0210740	TIGRFAM phage protein, HK97 gp10 family	NA
UHGV-0201574_23	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0201574_23	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0201574_23	Structural annotation	TIGR01725	NA	NA
UHGV-0201574_24	PHROG	phrog_78	tail terminator	connector
UHGV-0201574_24	eggNOG-mapper	1216932.CM240_1385	High confidence in function and specificity	NA
UHGV-0201574_24	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0201574_25	PHROG	phrog_88	major tail protein	tail
UHGV-0201574_25	UniRef90	UniRef90_R6MVE2	Phage major tail protein phi13 family	NA
UHGV-0201574_25	eggNOG-mapper	573061.Clocel_3970	phage major tail protein, phi13 family	NA
UHGV-0201574_25	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0201574_25	COG	COG5492	NA	NA
UHGV-0201574_25	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0201574_26	PHROG	phrog_2115	tail protein	tail
UHGV-0201574_26	eggNOG-mapper	1121334.KB911068_gene2297	NA	NA
UHGV-0201574_26	Structural annotation	PF11836	NA	NA
UHGV-0201574_27	PHROG	phrog_27742	NA	unknown function
UHGV-0201574_27	UniRef90	UniRef90_A0A564QB10	NA	NA
UHGV-0201574_27	eggNOG-mapper	387092.NIS_0354	NA	NA
UHGV-0201574_27	COG	COG1637	Endonuclease NucS, RecB family	NA
UHGV-0201574_27	Structural annotation	PF14088, PF01939, MF_00722, NF011857, COG1637	NA	NA
UHGV-0201574_28	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0201574_28	UniRef90	UniRef90_A0A374NA99	Phage tail protein	NA
UHGV-0201574_28	eggNOG-mapper	1216932.CM240_0625	tape measure	NA
UHGV-0201574_28	COG	COG5283	Phage-related tail protein	NA
UHGV-0201574_28	Structural annotation	PF20155, COG5280	NA	NA
UHGV-0201574_29	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0201574_29	UniRef90	UniRef90_A0A224AT67	Phage tail component	NA
UHGV-0201574_29	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0201574_29	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0201574_29	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0201574_29	COG	COG4722	Phage-related protein YomH	NA
UHGV-0201574_29	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0201574_30	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0201574_30	UniRef90	UniRef90_K1RM02	Phage protein (Fragment)	NA
UHGV-0201574_30	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0201574_30	COG	COG4926	Phage-related protein	NA
UHGV-0201574_31	KOfam	K07452	mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-]	NA
UHGV-0201574_31	UniRef90	UniRef90_A0A374FYS7	AAA domain-containing protein	NA
UHGV-0201574_31	eggNOG-mapper	1540257.JQMW01000009_gene2774	ATPase associated with various cellular activities	NA
UHGV-0201574_31	Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	AAA
UHGV-0201574_31	COG	COG1401	5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB	NA
UHGV-0201574_32	KOfam	K09124	NA	NA
UHGV-0201574_32	UniRef90	UniRef90_A0A374FYP1	NA	NA
UHGV-0201574_32	eggNOG-mapper	1540257.JQMW01000009_gene2775	NA	NA
UHGV-0201574_32	Pfam	PF09823	NA	DUF2357
UHGV-0201574_32	Pfam	PF04411	PD-(D/E)XK nuclease superfamily	PDDEXK_7
UHGV-0201574_33	PHROG	phrog_7234	NA	unknown function
UHGV-0201574_33	eggNOG-mapper	394503.Ccel_2861	NA	NA
UHGV-0201574_34	PHROG	phrog_408	NA	unknown function
UHGV-0201574_34	UniRef90	UniRef90_R6N0A3	rRNA biogenesis protein rrp5 putative	NA
UHGV-0201574_34	eggNOG-mapper	1216932.CM240_0600	NA	NA
UHGV-0201574_35	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0201574_35	UniRef90	UniRef90_A0A2T0GF39	NA	NA
UHGV-0201574_35	eggNOG-mapper	1035184.HMPREF1042_1370	NA	NA
UHGV-0201574_35	Pfam	PF10926	NA	DUF2800
UHGV-0201574_35	COG	COG2887	RecB family exonuclease	NA
UHGV-0201574_35	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0201574_36	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0201574_36	UniRef90	UniRef90_R5VQ47	Phage-related protein	NA
UHGV-0201574_36	eggNOG-mapper	748727.CLJU_c03380	NA	NA
UHGV-0201574_36	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0201574_36	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0201574_38	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0201574_38	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0201574_38	UniRef90	UniRef90_A0A374FZ97	DNA-directed DNA polymerase	NA
UHGV-0201574_38	eggNOG-mapper	1118055.CAGU01000013_gene800	DNA-directed DNA polymerase	NA
UHGV-0201574_38	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0201574_38	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0201574_38	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0201574_39	PHROG	phrog_2308	NA	unknown function
UHGV-0201574_39	UniRef90	UniRef90_A0A374G174	RNA polymerase subunit sigma-70	NA
UHGV-0201574_39	eggNOG-mapper	626939.HMPREF9443_02022	COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0201574_39	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0201574_39	Structural annotation	PF06056, COG2771	NA	NA
UHGV-0201574_40	PHROG	phrog_16129	excisionase	integration and excision
UHGV-0201574_40	UniRef90	UniRef90_A0A292S751	DNA-binding protein	NA
UHGV-0201574_40	eggNOG-mapper	641112.ACOK01000108_gene1815	Excisionase from transposon Tn916	NA
UHGV-0201574_40	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-0201574_40	Structural annotation	PF09035, TIGR01764, COG3311	NA	NA
UHGV-0201574_41	UniRef90	UniRef90_R6N5Z9	HTH_17 domain-containing protein	NA
UHGV-0201574_41	eggNOG-mapper	658088.HMPREF0987_02702	NA	NA
UHGV-0201574_41	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0201574_41	Structural annotation	PF09035, TIGR01764, COG3311	NA	NA
UHGV-0201574_42	KOfam	K14059	int; integrase	NA
UHGV-0201574_42	PHROG	phrog_1	integrase	integration and excision
UHGV-0201574_42	UniRef90	UniRef90_A0A1C6BNQ4	Integrase	NA
UHGV-0201574_42	eggNOG-mapper	476272.RUMHYD_01496	NA	NA
UHGV-0201574_42	Pfam	PF02920	DNA binding domain of tn916 integrase	Integrase_DNA
UHGV-0201574_42	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0201574_42	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0201574_42	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0201574_43	KOfam	K21463	tcaA; membrane-associated protein TcaA	NA
UHGV-0201574_43	UniRef90	UniRef90_A0A2N0UTC1	Putative membrane protein	NA
UHGV-0201574_43	eggNOG-mapper	349520.PPE_04604	F5/8 type C domain	NA
UHGV-0201574_43	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0201574_43	Pfam	PF03793	PASTA domain	PASTA
UHGV-0201574_43	Pfam	PF00754	F5/8 type C domain	F5_F8_type_C
UHGV-0201574_43	COG	COG2304	Secreted protein containing bacterial Ig-like domain and vWFA domain	NA