UHGV-0201910

Genome information

Genome length 40,939 bps

CDS count 52

Completeness 93.69% (high-quality)

geNomad score 0.9827

Prediction confidence Confident

Genome information
Genome ID	UHGV-0201910
vOTU ID	vOTU-011505
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN05414944_a1_ct88910_vs1@Myoviridae__sp._ctm1k1
BioSample	SAMN05414944
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.69% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9827
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.03
Jumbo phage	No

Genome content
Genome length	40,939 bps
GC content	59.13%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	91.89%
Average CDS length	729.12 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0201910_1	UniRef90	UniRef90_A0A8F0WD75	RNA polymerase sigma factor/Ubiquitin-like protein	NA
UHGV-0201910_1	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0201910_2	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0201910_3	PHROG	phrog_16490	NA	unknown function
UHGV-0201910_3	eggNOG-mapper	397290.C810_05212	NA	NA
UHGV-0201910_4	PHROG	phrog_22984	NA	unknown function
UHGV-0201910_6	UniRef90	UniRef90_A0A658JVX5	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0201910_6	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0201910_6	Structural annotation	PF04545, MF_00674, NF008895, COG1342	NA	NA
UHGV-0201910_7	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0201910_7	PHROG	phrog_670	endolysin	lysis
UHGV-0201910_7	UniRef90	UniRef90_A0A252F607	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0201910_7	eggNOG-mapper	411463.EUBVEN_00418	Ami_2	NA
UHGV-0201910_7	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0201910_7	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0201910_7	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0201910_7	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0201910_8	PHROG	phrog_1129	holin	lysis
UHGV-0201910_8	UniRef90	UniRef90_R5D220	Putative holin	NA
UHGV-0201910_8	eggNOG-mapper	1007096.BAGW01000032_gene1582	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0201910_8	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0201910_8	Structural annotation	PF06946	NA	NA
UHGV-0201910_9	eggNOG-mapper	428125.CLOLEP_01434	NA	NA
UHGV-0201910_10	PHROG	phrog_13589	NA	unknown function
UHGV-0201910_10	eggNOG-mapper	428125.CLOLEP_01434	NA	NA
UHGV-0201910_11	PHROG	phrog_31538	NA	unknown function
UHGV-0201910_11	eggNOG-mapper	411460.RUMTOR_01351	NA	NA
UHGV-0201910_12	PHROG	phrog_15594	NA	unknown function
UHGV-0201910_12	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-0201910_13	UniRef90	UniRef90_A0A3D5TE86	Branched-chain amino acid ABC transporter permease	NA
UHGV-0201910_13	eggNOG-mapper	1235835.C814_01206	NA	NA
UHGV-0201910_14	PHROG	phrog_22978	NA	unknown function
UHGV-0201910_14	UniRef90	UniRef90_R5G452	PBECR5 domain-containing protein	NA
UHGV-0201910_14	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-0201910_15	PHROG	phrog_2649	endolysin	lysis
UHGV-0201910_15	UniRef90	UniRef90_A0A645A9U3	PG_binding_1 domain-containing protein	NA
UHGV-0201910_15	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0201910_15	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0201910_15	Structural annotation	PF01471, TIGR02869	NA	NA
UHGV-0201910_16	PHROG	phrog_372	tail protein	tail
UHGV-0201910_16	UniRef90	UniRef90_UPI001D0897E0	NA	NA
UHGV-0201910_16	eggNOG-mapper	1235802.C823_05263	NA	NA
UHGV-0201910_16	Pfam	PF05895	NA	DUF859
UHGV-0201910_16	COG	COG4675	Phage tail collar domain	NA
UHGV-0201910_17	Structural annotation	NF038340	NA	NA
UHGV-0201910_18	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0201910_18	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0201910_18	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0201910_19	PHROG	phrog_12105	NA	unknown function
UHGV-0201910_19	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-0201910_21	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0201910_21	UniRef90	UniRef90_A0A2V2CFL5	N4-gp56 family major capsid protein	NA
UHGV-0201910_21	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-0201910_21	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0201910_21	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0201910_22	PHROG	phrog_13908	NA	unknown function
UHGV-0201910_22	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0201910_23	KOfam	K07584	NA	NA
UHGV-0201910_23	PHROG	phrog_4478	peptidase	other
UHGV-0201910_23	UniRef90	UniRef90_UPI00102FFAFD	ribosomal-processing cysteine protease Prp	NA
UHGV-0201910_23	eggNOG-mapper	1120973.AQXL01000127_gene2693	Cysteine protease Prp	NA
UHGV-0201910_23	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0201910_23	COG	COG2868	NA	NA
UHGV-0201910_23	Structural annotation	PF04327, NF011133, COG2868	NA	NA
UHGV-0201910_24	PHROG	phrog_156	portal protein	head and packaging
UHGV-0201910_24	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0201910_24	Structural annotation	PF16510, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0201910_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0201910_25	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0201910_25	UniRef90	UniRef90_A0A810Q5R0	Phage terminase large subunit	NA
UHGV-0201910_25	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0201910_25	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0201910_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0201910_25	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0201910_26	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0201910_26	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0201910_26	eggNOG-mapper	445972.ANACOL_01838	DNA-packaging protein gp3	NA
UHGV-0201910_26	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0201910_26	Structural annotation	PF16677	NA	NA
UHGV-0201910_28	UniRef90	UniRef90_A0A1Q9JGI6	RHH_1 domain-containing protein	NA
UHGV-0201910_28	eggNOG-mapper	1118055.CAGU01000028_gene99	NA	NA
UHGV-0201910_28	Structural annotation	PF03869, NF041793, COG4691	NA	NA
UHGV-0201910_32	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-0201910_33	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0201910_33	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0201910_33	Structural annotation	PF14354, TIGR03655, COG4888	NA	NA
UHGV-0201910_34	eggNOG-mapper	445972.ANACOL_00168	NA	NA
UHGV-0201910_35	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0201910_35	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0201910_35	UniRef90	UniRef90_A0A0U3EGR7	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0201910_35	eggNOG-mapper	742823.HMPREF9465_01257	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0201910_35	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0201910_35	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0201910_35	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0201910_39	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0201910_39	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0201910_39	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0201910_39	eggNOG-mapper	525919.Apre_0813	Endodeoxyribonuclease RusA	NA
UHGV-0201910_39	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0201910_39	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0201910_39	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0201910_41	PHROG	phrog_15768	NA	unknown function
UHGV-0201910_41	UniRef90	UniRef90_UPI00189C2664	NA	NA
UHGV-0201910_41	eggNOG-mapper	642492.Clole_0946	DnaD domain protein	NA
UHGV-0201910_41	AcrCatalog	cluster_38323	NA	NA
UHGV-0201910_41	Pfam	PF19808	NA	DUF6291
UHGV-0201910_41	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0201910_41	Structural annotation	PF19808	NA	NA
UHGV-0201910_42	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0201910_42	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0201910_42	UniRef90	UniRef90_A0A810QFR8	Single-stranded DNA-binding protein	NA
UHGV-0201910_42	eggNOG-mapper	1007096.BAGW01000023_gene151	Single-strand binding protein family	NA
UHGV-0201910_42	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0201910_42	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0201910_42	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0201910_42	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0201910_42	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0201910_43	UniRef90	UniRef90_UPI001F4CC127	helix-turn-helix domain-containing protein	NA
UHGV-0201910_43	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0201910_43	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0201910_44	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0201910_44	UniRef90	UniRef90_S5NS99	HNHc domain-containing protein	NA
UHGV-0201910_44	eggNOG-mapper	749413.E5DV63_9VIRU	HNH endonuclease	NA
UHGV-0201910_44	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0201910_44	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0201910_44	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0201910_44	Structural annotation	PF07463, PF13392	NA	NA
UHGV-0201910_45	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0201910_45	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0201910_45	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0201910_45	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0201910_46	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0201910_46	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0201910_47	UniRef90	UniRef90_A0A845QLQ8	NA	NA
UHGV-0201910_47	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0201910_47	Pfam	PF06378	NA	DUF1071
UHGV-0201910_47	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0201910_52	KOfam	K06336	tasA, cotN; spore coat-associated protein N	NA
UHGV-0201910_52	UniRef90	UniRef90_A0A1C5M265	SipW-cognate class signal peptide	NA
UHGV-0201910_52	Pfam	PF12389	Camelysin metallo-endopeptidase	Peptidase_M73
UHGV-0201910_52	NCBIFam	TIGR04088.1	SipW-dependent-type signal peptide-containing protein	NA