UHGV-0202219

Genome information

vOTU vOTU-019756

Genome length 23,731 bps

CDS count 32

Completeness 59.77% (medium-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-0202219
vOTU ID	vOTU-019756
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN01773384_a1_ct6798_vs1@linear@Siphoviridae__sp._ct2671
BioSample	SAMN01773384
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.77% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.75
Jumbo phage	No

Genome content
Genome length	23,731 bps
GC content	51.81%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	92.36%
Average CDS length	686.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0202219_1	PHROG	phrog_3893	NA	unknown function
UHGV-0202219_1	eggNOG-mapper	640513.Entas_3061	NA	NA
UHGV-0202219_2	PHROG	phrog_20001	tail fiber protein	tail
UHGV-0202219_2	UniRef90	UniRef90_UPI001D5AB2BF	phage tail protein	NA
UHGV-0202219_2	eggNOG-mapper	1224318.DT73_11775	NA	NA
UHGV-0202219_2	Structural annotation	PF12195	NA	NA
UHGV-0202219_3	PHROG	phrog_1265	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0202219_3	UniRef90	UniRef90_UPI000F82C090	NA	NA
UHGV-0202219_3	eggNOG-mapper	716541.ECL_01716	NA	NA
UHGV-0202219_3	Pfam	PF20051	NA	DUF6453
UHGV-0202219_3	Structural annotation	PF20051	NA	NA
UHGV-0202219_4	PHROG	phrog_5616	tail fiber protein	tail
UHGV-0202219_4	UniRef90	UniRef90_UPI0010916E9B	NA	NA
UHGV-0202219_4	eggNOG-mapper	1399774.JDWH01000035_gene2234	Putative phage tail protein	NA
UHGV-0202219_4	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0202219_4	Pfam	PF09327	NA	DUF1983
UHGV-0202219_4	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-0202219_4	Structural annotation	PF13550, PF09327, PF16323, PF21605, MF_04116, NF040662, NF010681, COG4733	NA	NA
UHGV-0202219_5	PHROG	phrog_2134	NA	unknown function
UHGV-0202219_5	UniRef90	UniRef90_A0A0J8VLI5	NA	NA
UHGV-0202219_5	eggNOG-mapper	1218086.BBNB01000014_gene2050	NA	NA
UHGV-0202219_5	Structural annotation	PF00877, NF008096, COG3738	NA	NA
UHGV-0202219_6	PHROG	phrog_2048	tail protein	tail
UHGV-0202219_6	UniRef90	UniRef90_A0A0J8VKB0	NA	NA
UHGV-0202219_6	eggNOG-mapper	1399774.JDWH01000035_gene2232	NA	NA
UHGV-0202219_6	Structural annotation	PF09931, TIGR01600, COG4672	NA	NA
UHGV-0202219_7	PHROG	phrog_1302	distal tail protein	tail
UHGV-0202219_7	UniRef90	UniRef90_A0A0J8Y927	NA	NA
UHGV-0202219_7	eggNOG-mapper	1399774.JDWH01000035_gene2231	NA	NA
UHGV-0202219_7	Structural annotation	PF09343, TIGR02217, COG4718	NA	NA
UHGV-0202219_8	PHROG	phrog_2854	tail length tape measure protein	tail
UHGV-0202219_8	UniRef90	UniRef90_UPI001F416A97	phage tail tape measure protein	NA
UHGV-0202219_8	eggNOG-mapper	1115515.EV102420_11_00070	sister chromatid segregation	NA
UHGV-0202219_8	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-0202219_8	NCBIFam	TIGR01541.1	phage tail tape measure protein	NA
UHGV-0202219_8	COG	COG2911	Autotransporter translocation and assembly protein TamB	NA
UHGV-0202219_8	Structural annotation	MF_04138, TIGR01541, COG5281	NA	NA
UHGV-0202219_9	PHROG	phrog_5297	tail protein	tail
UHGV-0202219_9	UniRef90	UniRef90_A0A3Q8DCT9	Phage tail protein	NA
UHGV-0202219_9	eggNOG-mapper	10742.Q9MCU7_BPHK0	NA	NA
UHGV-0202219_10	PHROG	phrog_1749	tail assembly chaperone	tail
UHGV-0202219_10	UniRef90	UniRef90_UPI0009AF63B2	phage tail assembly chaperone family protein, TAC	NA
UHGV-0202219_10	eggNOG-mapper	10742.Q9MCU8_BPHK0	Pfam:Phage_TAC_13	NA
UHGV-0202219_10	Pfam	PF16459	Phage tail assembly chaperone, TAC	Phage_TAC_13
UHGV-0202219_10	Structural annotation	PF16459	NA	NA
UHGV-0202219_11	PHROG	phrog_158	major tail protein	tail
UHGV-0202219_11	UniRef90	UniRef90_A0A0F1A3P5	Phage major tail protein	NA
UHGV-0202219_11	eggNOG-mapper	932213.SPM24T3_24191	Phage tail tube, TTP, lambda-like	NA
UHGV-0202219_11	Pfam	PF16460	Phage tail tube, TTP, lambda-like	Phage_TTP_11
UHGV-0202219_11	Structural annotation	PF16460, TIGR02241, COG5437	NA	NA
UHGV-0202219_12	PHROG	phrog_78	tail terminator	connector
UHGV-0202219_12	UniRef90	UniRef90_A0A7Z8C0A1	NA	NA
UHGV-0202219_12	eggNOG-mapper	1115515.EV102420_11_00120	NA	NA
UHGV-0202219_12	Pfam	PF11367	NA	DUF3168
UHGV-0202219_12	Structural annotation	PF11367	NA	NA
UHGV-0202219_13	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0202219_13	UniRef90	UniRef90_A0A5U1N4K2	HK97 gp10 family phage protein	NA
UHGV-0202219_13	eggNOG-mapper	10742.Q9MCV1_BPHK0	exonuclease activity	NA
UHGV-0202219_13	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0202219_13	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0202219_13	Structural annotation	TIGR01725	NA	NA
UHGV-0202219_14	PHROG	phrog_25	head closure Hc1	connector
UHGV-0202219_14	UniRef90	UniRef90_A0A0F1A6R8	Head-tail adaptor protein	NA
UHGV-0202219_14	eggNOG-mapper	1147150.K7PH08_9CAUD	Phage head-tail joining protein	NA
UHGV-0202219_14	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0202219_14	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0202219_14	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0202219_15	PHROG	phrog_2612	NA	unknown function
UHGV-0202219_15	UniRef90	UniRef90_A0A198GFG7	NA	NA
UHGV-0202219_15	eggNOG-mapper	1147143.K7P6F3_9CAUD	NA	NA
UHGV-0202219_16	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0202219_16	UniRef90	UniRef90_A0A837F2Q3	NA	NA
UHGV-0202219_16	eggNOG-mapper	1399774.JDWH01000034_gene1974	Phage gp6-like head-tail connector protein	NA
UHGV-0202219_16	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0202219_16	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0202219_16	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0202219_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-0202219_17	UniRef90	UniRef90_A0A133LP05	Phage major capsid protein, HK97 family	NA
UHGV-0202219_17	eggNOG-mapper	1399774.JDWH01000035_gene2224	capsid protein	NA
UHGV-0202219_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0202219_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0202219_17	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0202219_17	Structural annotation	PF05065, MF_04113, TIGR01554, COG4653	NA	NA
UHGV-0202219_18	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0202219_18	PHROG	phrog_1684	head maturation protease	head and packaging
UHGV-0202219_18	UniRef90	UniRef90_A0A837F7M9	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0202219_18	eggNOG-mapper	1147150.K7PH05_9CAUD	Clp protease	NA
UHGV-0202219_18	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0202219_18	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-0202219_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-0202219_19	UniRef90	UniRef90_A0A330G3S9	Phage portal protein	NA
UHGV-0202219_19	eggNOG-mapper	1147150.K7PJU5_9CAUD	Phage portal protein	NA
UHGV-0202219_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0202219_19	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0202219_19	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0202219_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0202219_20	UniRef90	UniRef90_A0A2P5GP33	Terminase	NA
UHGV-0202219_20	eggNOG-mapper	1147150.K7PKT2_9CAUD	Phage Terminase	NA
UHGV-0202219_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0202219_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0202219_20	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0202219_21	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0202219_21	UniRef90	UniRef90_K7PHI2	Terminase small subunit	NA
UHGV-0202219_21	eggNOG-mapper	1147150.K7PHI2_9CAUD	Phage terminase, small subunit	NA
UHGV-0202219_21	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0202219_21	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0202219_21	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0202219_22	PHROG	phrog_17731	NA	unknown function
UHGV-0202219_23	PHROG	phrog_3202	NA	unknown function
UHGV-0202219_23	eggNOG-mapper	741091.Rahaq_1803	NA	NA
UHGV-0202219_24	PHROG	phrog_854	glucosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0202219_24	eggNOG-mapper	1399774.JDWH01000016_gene3435	Glycosyl transferase, family 2	NA
UHGV-0202219_24	COG	COG0463	Glycosyltransferase involved in cell wall bisynthesis	NA
UHGV-0202219_24	Structural annotation	PF03071, TIGR03937, COG3306	NA	NA
UHGV-0202219_25	PHROG	phrog_35718	NA	unknown function
UHGV-0202219_27	PHROG	phrog_1579	glycosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0202219_27	UniRef90	UniRef90_UPI00197F4150	glycosyltransferase family 2 protein	NA
UHGV-0202219_27	eggNOG-mapper	716541.ECL_01682	Glycosyl transferase, family 2	NA
UHGV-0202219_27	COG	COG1216	Glycosyltransferase, GT2 family	NA
UHGV-0202219_27	Structural annotation	PF03414, PF13641, MF_01520, TIGR03965, NF041524, COG1216, COG1442	NA	NA
UHGV-0202219_28	PHROG	phrog_26297	NA	unknown function
UHGV-0202219_28	eggNOG-mapper	1161401.ASJA01000012_gene787	NA	NA
UHGV-0202219_29	PHROG	phrog_26238	NA	unknown function
UHGV-0202219_29	eggNOG-mapper	523791.Kkor_1250	Tetratricopeptide repeat	NA
UHGV-0202219_29	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-0202219_30	PHROG	phrog_1026	Rz-like spanin	lysis
UHGV-0202219_30	eggNOG-mapper	1399774.JDWH01000016_gene3439	NA	NA
UHGV-0202219_31	PHROG	phrog_2241	NA	unknown function
UHGV-0202219_32	KOfam	K03791	K03791; putative chitinase	NA
UHGV-0202219_32	PHROG	phrog_181	endolysin	lysis
UHGV-0202219_32	UniRef90	UniRef90_A0A2J0Q0C3	Endolysin	NA
UHGV-0202219_32	eggNOG-mapper	716541.ECL_01679	PFAM glycoside hydrolase family 19	NA
UHGV-0202219_32	Pfam	PF00182	Chitinase class I	Glyco_hydro_19
UHGV-0202219_32	COG	COG3179	Chitinase, GH19 family	NA