UHGV-0202335

Genome information

Genome length 26,511 bps

CDS count 27

Completeness 59.68% (medium-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-0202335
vOTU ID	vOTU-030579
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN09781740_a1_ct287031_vs1@Siphoviridae__sp._cto9X1
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.68% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39
Jumbo phage	No

Genome content
Genome length	26,511 bps
GC content	50.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	27
CDS density	91.46%
Average CDS length	900.44 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0202335_2	UniRef90	UniRef90_A0A2U8UUG5	Holliday junction resolvase	NA
UHGV-0202335_2	eggNOG-mapper	1121929.KB898702_gene248	Archaeal holliday junction resolvase (hjc)	NA
UHGV-0202335_2	COG	COG1591	Holliday junction resolvase Hjc, archaeal type	NA
UHGV-0202335_3	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0202335_3	UniRef90	UniRef90_A0A5D4T6V1	NA	NA
UHGV-0202335_3	eggNOG-mapper	1321786.HMPREF1992_00991	sigma factor activity	NA
UHGV-0202335_3	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0202335_3	Structural annotation	PF07374, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-0202335_4	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0202335_4	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0202335_4	UniRef90	UniRef90_A0A101WI32	Methyltransferase	NA
UHGV-0202335_4	eggNOG-mapper	226185.EF_2114	DNA methylase	NA
UHGV-0202335_4	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0202335_4	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0202335_4	COG	COG0863	DNA modification methylase	NA
UHGV-0202335_4	Structural annotation	PF01555, PF02195, NF010253, TIGR00180, COG0863, COG5119	NA	NA
UHGV-0202335_5	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0202335_5	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0202335_5	UniRef90	UniRef90_A0A233V9X7	DNA modification methylase	NA
UHGV-0202335_5	eggNOG-mapper	226185.EF_2114	DNA methylase	NA
UHGV-0202335_5	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0202335_5	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0202335_5	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0202335_5	COG	COG0863	DNA modification methylase	NA
UHGV-0202335_5	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0202335_7	eggNOG-mapper	1027292.HMPREF9372_1269	NA	NA
UHGV-0202335_7	AcrCatalog	cluster_6712	NA	NA
UHGV-0202335_8	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0202335_8	UniRef90	UniRef90_A0A7X7EN10	Phage terminase small subunit P27 family	NA
UHGV-0202335_8	eggNOG-mapper	1469948.JPNB01000001_gene688	Phage terminase, small subunit	NA
UHGV-0202335_8	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0202335_8	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0202335_8	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0202335_8	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0202335_9	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0202335_9	UniRef90	UniRef90_A0A1Q6PTP4	Terminase	NA
UHGV-0202335_9	eggNOG-mapper	573061.Clocel_0778	Terminase	NA
UHGV-0202335_9	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0202335_9	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0202335_9	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0202335_9	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0202335_10	PHROG	phrog_12	portal protein	head and packaging
UHGV-0202335_10	UniRef90	UniRef90_A0A2V2FJ22	Phage portal protein	NA
UHGV-0202335_10	eggNOG-mapper	1235802.C823_05278	Phage portal protein	NA
UHGV-0202335_10	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0202335_10	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0202335_10	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0202335_10	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0202335_11	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0202335_11	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0202335_11	UniRef90	UniRef90_A0A2V2FK72	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0202335_11	eggNOG-mapper	679201.HMPREF9334_00477	Belongs to the peptidase S14 family	NA
UHGV-0202335_11	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0202335_11	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0202335_11	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0202335_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-0202335_12	UniRef90	UniRef90_F6DMJ1	Phage major capsid protein, HK97 family	NA
UHGV-0202335_12	eggNOG-mapper	696281.Desru_3549	TIGRFAM phage major capsid protein, HK97 family	NA
UHGV-0202335_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0202335_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0202335_12	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0202335_12	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0202335_13	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0202335_13	UniRef90	UniRef90_A0A7X7FKE4	Phage gp6-like head-tail connector protein	NA
UHGV-0202335_13	eggNOG-mapper	1388763.O165_022245	DNA packaging	NA
UHGV-0202335_13	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0202335_13	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0202335_13	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0202335_14	PHROG	phrog_25	head closure Hc1	connector
UHGV-0202335_14	UniRef90	UniRef90_A0A7X7FI16	Phage head closure protein	NA
UHGV-0202335_14	eggNOG-mapper	994573.T472_0211940	head-tail adaptor	NA
UHGV-0202335_14	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0202335_14	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0202335_14	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0202335_14	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0202335_15	Structural annotation	PF05657	NA	NA
UHGV-0202335_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0202335_16	eggNOG-mapper	1123288.SOV_2c03570	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0202335_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0202335_16	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0202335_16	COG	COG5005	NA	NA
UHGV-0202335_16	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0202335_17	PHROG	phrog_88	major tail protein	tail
UHGV-0202335_17	UniRef90	UniRef90_A0A7X7DSE6	Phage tail protein	NA
UHGV-0202335_17	eggNOG-mapper	1408422.JHYF01000021_gene974	NA	NA
UHGV-0202335_17	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0202335_17	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0202335_17	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0202335_19	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0202335_19	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0202335_19	UniRef90	UniRef90_A0A7C6FQN7	Phage tail tape measure protein	NA
UHGV-0202335_19	eggNOG-mapper	1289596.M1PKM6_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0202335_19	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0202335_19	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0202335_19	Structural annotation	PF10145, TIGR01760, TIGR01843, COG5280	NA	NA
UHGV-0202335_20	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0202335_20	UniRef90	UniRef90_A0A7C6FS63	Phage tail protein	NA
UHGV-0202335_20	eggNOG-mapper	1121342.AUCO01000004_gene648	tail component	NA
UHGV-0202335_20	COG	COG4722	Phage-related protein YomH	NA
UHGV-0202335_20	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0202335_21	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0202335_21	UniRef90	UniRef90_A0A3D2JIN2	SH3b domain-containing protein (Fragment)	NA
UHGV-0202335_21	eggNOG-mapper	386415.NT01CX_2159	Phage minor structural protein	NA
UHGV-0202335_21	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0202335_21	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0202335_21	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0202335_21	COG	COG4926	Phage-related protein	NA
UHGV-0202335_23	PHROG	phrog_27126	neck protein	connector
UHGV-0202335_23	eggNOG-mapper	1408321.JNJD01000008_gene2036	NA	NA