UHGV-0203116

Genome information

Genome length 33,202 bps

CDS count 52

Completeness 100.00% (complete)

geNomad score 0.9760

Prediction confidence Confident

Genome information
Genome ID	UHGV-0203116
vOTU ID	vOTU-047620
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SRS104485_a1_ct361@circular@Siphoviridae__sp._ctPYB361
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9760
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.59
Jumbo phage	No

Genome content
Genome length	33,202 bps
GC content	46.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	90.74%
Average CDS length	582.87 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0203116_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0203116_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0203116_1	UniRef90	UniRef90_UPI00068157C7	helix-turn-helix domain-containing protein	NA
UHGV-0203116_1	eggNOG-mapper	1235835.C814_03415	helix-turn-helix	NA
UHGV-0203116_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0203116_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0203116_2	UniRef90	UniRef90_UPI000680BD27	helix-turn-helix domain-containing protein	NA
UHGV-0203116_2	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0203116_2	Structural annotation	PF13560, NF041677, COG1396	NA	NA
UHGV-0203116_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0203116_3	UniRef90	UniRef90_A0A4V3R9F0	XRE family transcriptional regulator	NA
UHGV-0203116_3	eggNOG-mapper	97138.C820_00805	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0203116_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0203116_3	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0203116_5	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0203116_5	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0203116_5	UniRef90	UniRef90_UPI00068099B2	helix-turn-helix domain-containing protein	NA
UHGV-0203116_5	eggNOG-mapper	1226325.HMPREF1548_03113	Helix-turn-helix XRE-family like proteins	NA
UHGV-0203116_5	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0203116_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0203116_5	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0203116_9	UniRef90	UniRef90_R6GFI3	HTH cro/C1-type domain-containing protein	NA
UHGV-0203116_9	eggNOG-mapper	428125.CLOLEP_02009	sequence-specific DNA binding	NA
UHGV-0203116_9	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0203116_9	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0203116_9	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-0203116_11	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0203116_11	eggNOG-mapper	641107.CDLVIII_1314	NA	NA
UHGV-0203116_11	Structural annotation	PF21578	NA	NA
UHGV-0203116_12	KOfam	K03700	recU; recombination protein U	NA
UHGV-0203116_12	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0203116_12	UniRef90	UniRef90_UPI00093D3F54	Holliday junction resolvase RecU	NA
UHGV-0203116_12	eggNOG-mapper	1211817.CCAT010000012_gene2726	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0203116_12	Pfam	PF03838	Recombination protein U	RecU
UHGV-0203116_12	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0203116_12	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0203116_13	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0203116_13	UniRef90	UniRef90_A0A3D3FGT2	Sigma70_r4 domain-containing protein	NA
UHGV-0203116_13	eggNOG-mapper	1120978.KB894081_gene99	NA	NA
UHGV-0203116_13	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0203116_13	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0203116_15	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0203116_15	UniRef90	UniRef90_A0A417T189	Helix-turn-helix domain-containing protein	NA
UHGV-0203116_15	eggNOG-mapper	742733.HMPREF9469_01828	transposase activity	NA
UHGV-0203116_15	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0203116_15	Structural annotation	PF07141	NA	NA
UHGV-0203116_16	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0203116_16	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0203116_16	UniRef90	UniRef90_A0A1Y4ES07	Terminase	NA
UHGV-0203116_16	eggNOG-mapper	411471.SUBVAR_06507	Phage terminase, large subunit, PBSX family	NA
UHGV-0203116_16	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0203116_16	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0203116_16	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0203116_16	COG	COG1783	Phage terminase large subunit	NA
UHGV-0203116_16	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0203116_18	PHROG	phrog_533	portal protein	head and packaging
UHGV-0203116_18	UniRef90	UniRef90_A0A4R1QXX3	A118 family predicted phage portal protein	NA
UHGV-0203116_18	eggNOG-mapper	693746.OBV_18040	NA	NA
UHGV-0203116_18	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0203116_19	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0203116_19	UniRef90	UniRef90_UPI0006814CA4	phage minor capsid protein	NA
UHGV-0203116_19	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-0203116_19	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0203116_19	COG	COG2369	NA	NA
UHGV-0203116_19	Structural annotation	PF06152, PF12636	NA	NA
UHGV-0203116_20	eggNOG-mapper	663278.Ethha_0092	NA	NA
UHGV-0203116_22	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0203116_22	UniRef90	UniRef90_UPI000682EB3D	phage scaffolding protein	NA
UHGV-0203116_22	eggNOG-mapper	693746.OBV_18080	COG NOG36366 non supervised orthologous group	NA
UHGV-0203116_22	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0203116_22	Structural annotation	PF06810	NA	NA
UHGV-0203116_23	PHROG	phrog_422	major head protein	head and packaging
UHGV-0203116_23	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-0203116_23	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0203116_25	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0203116_25	eggNOG-mapper	693746.OBV_18110	NA	NA
UHGV-0203116_26	Structural annotation	PF20536, MF_01370, TIGR02126	NA	NA
UHGV-0203116_27	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0203116_27	UniRef90	UniRef90_A0A4R1QRE8	Minor capsid protein	NA
UHGV-0203116_27	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0203116_27	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0203116_27	Structural annotation	PF11114	NA	NA
UHGV-0203116_28	PHROG	phrog_3266	tail completion	connector
UHGV-0203116_28	eggNOG-mapper	693746.OBV_18140	NA	NA
UHGV-0203116_28	Structural annotation	PF08873	NA	NA
UHGV-0203116_29	PHROG	phrog_3099	NA	unknown function
UHGV-0203116_29	eggNOG-mapper	411471.SUBVAR_06936	NA	NA
UHGV-0203116_29	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0203116_30	PHROG	phrog_11299	NA	unknown function
UHGV-0203116_30	UniRef90	UniRef90_UPI001C03A209	V-type proton ATPase subunit E	NA
UHGV-0203116_30	eggNOG-mapper	1226322.HMPREF1545_00057	NA	NA
UHGV-0203116_31	PHROG	phrog_706	NA	unknown function
UHGV-0203116_31	UniRef90	UniRef90_UPI000A1C987E	Gp15 family bacteriophage protein	NA
UHGV-0203116_31	eggNOG-mapper	1226322.HMPREF1545_00058	Bacteriophage Gp15 protein	NA
UHGV-0203116_31	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0203116_31	Structural annotation	PF06854	NA	NA
UHGV-0203116_32	PHROG	phrog_806	NA	unknown function
UHGV-0203116_32	UniRef90	UniRef90_A0A1Y4EW04	NA	NA
UHGV-0203116_32	eggNOG-mapper	999411.HMPREF1092_01065	NA	NA
UHGV-0203116_32	Pfam	PF11611	NA	DUF4352
UHGV-0203116_33	UniRef90	UniRef90_UPI000A1CB5D4	zinc ribbon domain-containing protein	NA
UHGV-0203116_34	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0203116_34	UniRef90	UniRef90_R6TDK7	Phage-related protein-like protein	NA
UHGV-0203116_34	eggNOG-mapper	1120746.CCNL01000014_gene2105	tape measure	NA
UHGV-0203116_34	COG	COG1511	NA	NA
UHGV-0203116_35	PHROG	phrog_1194	NA	unknown function
UHGV-0203116_35	eggNOG-mapper	1229517.AMFD01000023_gene1305	NA	NA
UHGV-0203116_35	Pfam	PF20458	NA	DUF6711
UHGV-0203116_35	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0203116_36	PHROG	phrog_6616	tail protein	tail
UHGV-0203116_36	UniRef90	UniRef90_UPI00085BC306	tail fiber domain-containing protein	NA
UHGV-0203116_36	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0203116_36	COG	COG4926	Phage-related protein	NA
UHGV-0203116_36	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0203116_37	PHROG	phrog_19280	NA	unknown function
UHGV-0203116_37	UniRef90	UniRef90_A0A1Y4ERW2	BppU_N domain-containing protein	NA
UHGV-0203116_37	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0203116_39	PHROG	phrog_18593	NA	unknown function
UHGV-0203116_39	UniRef90	UniRef90_A0A1C6AVU9	Carbohydrate binding domain	NA
UHGV-0203116_39	eggNOG-mapper	552398.HMPREF0866_03095	NA	NA
UHGV-0203116_39	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0203116_39	Structural annotation	PF14600	NA	NA
UHGV-0203116_40	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0203116_40	PHROG	phrog_670	endolysin	lysis
UHGV-0203116_40	UniRef90	UniRef90_A0A1Y4EW15	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0203116_40	eggNOG-mapper	938288.HG326226_gene880	Negative regulator of beta-lactamase expression	NA
UHGV-0203116_40	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0203116_40	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0203116_41	PHROG	phrog_4105	NA	unknown function
UHGV-0203116_41	eggNOG-mapper	903814.ELI_1319	NA	NA
UHGV-0203116_42	PHROG	phrog_20258	NA	unknown function
UHGV-0203116_42	eggNOG-mapper	411471.SUBVAR_06974	NA	NA
UHGV-0203116_43	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0203116_43	PHROG	phrog_11157	NA	unknown function
UHGV-0203116_43	UniRef90	UniRef90_UPI000681F570	Ig-like domain-containing protein	NA
UHGV-0203116_43	eggNOG-mapper	33035.JPJF01000023_gene3227	NA	NA
UHGV-0203116_43	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0203116_43	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0203116_43	NCBIFam	NF033510.3	Ca2+-stabilized repeat-containing adhesin	NA
UHGV-0203116_43	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0203116_43	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0203116_44	UniRef90	UniRef90_UPI000A1CE24C	PF13754 domain-containing protein	NA
UHGV-0203116_44	Pfam	PF13754	NA	Big_3_4
UHGV-0203116_45	eggNOG-mapper	1280698.AUJS01000007_gene1056	NA	NA
UHGV-0203116_45	Structural annotation	PF07703, NF038114, COG5501	NA	NA
UHGV-0203116_47	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0203116_48	UniRef90	UniRef90_UPI000A1C8054	leucine-rich repeat domain-containing protein	NA
UHGV-0203116_48	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0203116_48	Structural annotation	PF13306	NA	NA
UHGV-0203116_50	UniRef90	UniRef90_UPI0009E678A3	helix-turn-helix domain-containing protein	NA
UHGV-0203116_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0203116_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0203116_51	KOfam	K03088	rpoE; RNA polymerase sigma-70 factor, ECF subfamily	NA
UHGV-0203116_51	UniRef90	UniRef90_UPI000A1CD45A	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0203116_51	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0203116_51	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0203116_51	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0203116_52	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0203116_52	PHROG	phrog_95	integrase	integration and excision
UHGV-0203116_52	UniRef90	UniRef90_UPI000A1CD91C	recombinase family protein	NA
UHGV-0203116_52	eggNOG-mapper	1120746.CCNL01000010_gene1415	recombinase activity	NA
UHGV-0203116_52	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0203116_52	Pfam	PF07508	Recombinase	Recombinase
UHGV-0203116_52	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0203116_52	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA