UHGV-0203209

Genome information

Genome length 32,920 bps

CDS count 38

Completeness 81.37% (medium-quality)

geNomad score 0.9756

Prediction confidence Confident

Genome information
Genome ID	UHGV-0203209
vOTU ID	vOTU-030632
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN11252277_a1_ct218948_vs1@Siphoviridae__sp._ctFy61
BioSample	NA
Country	Ethiopia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.37% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9756
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.03
Jumbo phage	No

Genome content
Genome length	32,920 bps
GC content	59.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	92.64%
Average CDS length	811.42 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0203209_1	PHROG	phrog_695	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UHGV-0203209_1	UniRef90	UniRef90_A0A7J5MZK1	DNA primase	NA
UHGV-0203209_1	eggNOG-mapper	1437608.BBIA_0630	Bifunctional DNA primase/polymerase, N-terminal	NA
UHGV-0203209_1	Pfam	PF09250	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
UHGV-0203209_1	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0203209_1	Structural annotation	PF01057, NF011296, COG3378	NA	NA
UHGV-0203209_2	UniRef90	UniRef90_UPI001076266F	transposase	NA
UHGV-0203209_2	eggNOG-mapper	1435051.BMOU_0784	NA	NA
UHGV-0203209_2	Structural annotation	PF01815	NA	NA
UHGV-0203209_4	PHROG	phrog_22401	NA	unknown function
UHGV-0203209_4	eggNOG-mapper	1437609.BCAL_1733	NA	NA
UHGV-0203209_5	PHROG	phrog_908	NA	unknown function
UHGV-0203209_5	UniRef90	UniRef90_A0A415FWY0	DNA-binding protein	NA
UHGV-0203209_5	eggNOG-mapper	566552.BIFCAT_00879	tRNA 5'-leader removal	NA
UHGV-0203209_5	COG	COG2023	Ribonuclease P protein subunit RPR2	NA
UHGV-0203209_5	Structural annotation	COG0789	NA	NA
UHGV-0203209_8	PHROG	phrog_597	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0203209_8	UniRef90	UniRef90_A0A1X2ZMQ9	G28 phagic protein	NA
UHGV-0203209_8	eggNOG-mapper	1680.BADO_1215	Transcriptional regulator	NA
UHGV-0203209_8	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0203209_8	Structural annotation	PF12728, NF033499, COG3311	NA	NA
UHGV-0203209_11	eggNOG-mapper	158787.BSCA_1012	NA	NA
UHGV-0203209_12	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0203209_12	UniRef90	UniRef90_A0A1X3A9X3	Terminase	NA
UHGV-0203209_12	eggNOG-mapper	158787.BSCA_1010	Phage terminase, small subunit	NA
UHGV-0203209_12	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0203209_12	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0203209_12	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0203209_12	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0203209_13	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0203209_13	UniRef90	UniRef90_W4NAK9	Terminase	NA
UHGV-0203209_13	eggNOG-mapper	1435051.BMOU_0780	Phage Terminase	NA
UHGV-0203209_13	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0203209_13	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0203209_13	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0203209_13	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0203209_15	PHROG	phrog_12	portal protein	head and packaging
UHGV-0203209_15	UniRef90	UniRef90_A0A1X3AA46	PE-PGRS family protein	NA
UHGV-0203209_15	eggNOG-mapper	1435051.BMOU_0778	Phage portal protein	NA
UHGV-0203209_15	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0203209_15	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0203209_15	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0203209_16	KOfam	K06904	NA	NA
UHGV-0203209_16	PHROG	phrog_10	major head protein	head and packaging
UHGV-0203209_16	UniRef90	UniRef90_A0A6A2RR94	HK97 family phage prohead protease	NA
UHGV-0203209_16	eggNOG-mapper	1435051.BMOU_0777	Phage capsid family	NA
UHGV-0203209_16	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0203209_16	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0203209_16	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0203209_16	COG	COG3740	Phage head maturation protease	NA
UHGV-0203209_17	PHROG	phrog_442	head-tail adaptor	connector
UHGV-0203209_17	UniRef90	UniRef90_A0A1X2ZNE2	Mobile element protein	NA
UHGV-0203209_17	eggNOG-mapper	1435051.BMOU_0776	NA	NA
UHGV-0203209_17	Structural annotation	TIGR02215	NA	NA
UHGV-0203209_18	eggNOG-mapper	1435051.BMOU_0775	NA	NA
UHGV-0203209_19	eggNOG-mapper	1435051.BMOU_0774	NA	NA
UHGV-0203209_19	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0203209_20	eggNOG-mapper	1435051.BMOU_0773	NA	NA
UHGV-0203209_20	Structural annotation	PF16807, NF040576, COG3167	NA	NA
UHGV-0203209_21	PHROG	phrog_476	major tail protein	tail
UHGV-0203209_21	UniRef90	UniRef90_A0A087DI33	Major tail subunit	NA
UHGV-0203209_21	eggNOG-mapper	1435051.BMOU_0772	NA	NA
UHGV-0203209_21	Structural annotation	PF09393, TIGR01603, COG3498	NA	NA
UHGV-0203209_22	PHROG	phrog_5010	tail assembly chaperone	tail
UHGV-0203209_22	eggNOG-mapper	566552.BIFCAT_00864	NA	NA
UHGV-0203209_23	eggNOG-mapper	1435051.BMOU_0770	NA	NA
UHGV-0203209_24	PHROG	phrog_971	endolysin	lysis
UHGV-0203209_24	UniRef90	UniRef90_A0A1X3A9R3	Cell surface protein	NA
UHGV-0203209_24	eggNOG-mapper	1435051.BMOU_0768	phage tail tape measure protein	NA
UHGV-0203209_24	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0203209_24	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0203209_24	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0203209_24	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-0203209_24	Structural annotation	PF20155, PF09486, TIGR02971, COG3953, COG3941, COG1579	NA	NA
UHGV-0203209_25	PHROG	phrog_5577	minor tail protein	tail
UHGV-0203209_25	UniRef90	UniRef90_W4N9I3	Phage tail domain protein	NA
UHGV-0203209_25	eggNOG-mapper	566552.BIFCAT_00861	NA	NA
UHGV-0203209_25	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0203209_26	PHROG	phrog_3398	virion structural protein	head and packaging
UHGV-0203209_26	UniRef90	UniRef90_A0A087B698	Putative phage protein gp45	NA
UHGV-0203209_26	eggNOG-mapper	566552.BIFCAT_00860	NA	NA
UHGV-0203209_26	Structural annotation	PF05475, NF033147, COG4935	NA	NA
UHGV-0203209_27	PHROG	phrog_1885	minor tail protein	tail
UHGV-0203209_27	UniRef90	UniRef90_A0A087B699	Putative major tail protein	NA
UHGV-0203209_27	eggNOG-mapper	566552.BIFCAT_00859	NA	NA
UHGV-0203209_27	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0203209_28	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0203209_28	PHROG	phrog_1775	minor head protein	head and packaging
UHGV-0203209_28	UniRef90	UniRef90_A0A1X2Z8V6	Autotransporter adhesin	NA
UHGV-0203209_28	eggNOG-mapper	566552.BIFCAT_00858	nuclear chromosome segregation	NA
UHGV-0203209_28	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0203209_29	eggNOG-mapper	566552.BIFCAT_00857	NA	NA
UHGV-0203209_30	PHROG	phrog_1397	NA	unknown function
UHGV-0203209_30	UniRef90	UniRef90_A0A1X2ZMT4	PRTRC system protein E	NA
UHGV-0203209_30	eggNOG-mapper	78345.BMERY_0865	NA	NA
UHGV-0203209_31	PHROG	phrog_263	holin	lysis
UHGV-0203209_31	UniRef90	UniRef90_B6XUG7	Putative holin, SPP1 family	NA
UHGV-0203209_31	eggNOG-mapper	566552.BIFCAT_00852	SPP1 phage holin	NA
UHGV-0203209_31	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0203209_32	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0203209_32	PHROG	phrog_19265	NA	unknown function
UHGV-0203209_32	UniRef90	UniRef90_B6XUG6	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0203209_32	eggNOG-mapper	566552.BIFCAT_00851	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0203209_32	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0203209_32	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0203209_32	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-0203209_33	KOfam	K14059	int; integrase	NA
UHGV-0203209_33	PHROG	phrog_1	integrase	integration and excision
UHGV-0203209_33	UniRef90	UniRef90_A0A1X3A9U5	Integrase	NA
UHGV-0203209_33	eggNOG-mapper	1435051.BMOU_0270	Phage integrase family	NA
UHGV-0203209_33	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0203209_33	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0203209_33	Structural annotation	PF00589, PF02899, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0203209_34	PHROG	phrog_597	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0203209_34	UniRef90	UniRef90_A0A087B8G1	Gp28 phagic protein	NA
UHGV-0203209_34	eggNOG-mapper	78346.BRUM_0375	Transcriptional regulator	NA
UHGV-0203209_34	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0203209_34	Structural annotation	PF12728, NF033499, COG3311	NA	NA
UHGV-0203209_37	PHROG	phrog_1281	NA	unknown function
UHGV-0203209_37	UniRef90	UniRef90_A0A1X3AAG9	Phage-associated protein	NA
UHGV-0203209_37	eggNOG-mapper	762211.BSTEL_0669	NA	NA
UHGV-0203209_37	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0203209_37	COG	COG3600	NA	NA
UHGV-0203209_37	Structural annotation	PF13274, COG3600	NA	NA