UHGV-0203626

Genome information

Genome length 32,658 bps

CDS count 50

Completeness 99.90% (high-quality)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-0203626
vOTU ID	vOTU-011530
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN11893698_a1_ct253769_vs1@Siphoviridae__sp._ct7Th1
BioSample	SAMN11893698
Country	Ireland
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.21
Jumbo phage	No

Genome content
Genome length	32,658 bps
GC content	50.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	87.27%
Average CDS length	573.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0203626_1	UniRef90	UniRef90_A0A3A9FI03	Chemotaxis protein	NA
UHGV-0203626_1	eggNOG-mapper	1304866.K413DRAFT_0813	NA	NA
UHGV-0203626_3	PHROG	phrog_11237	NA	unknown function
UHGV-0203626_3	eggNOG-mapper	1235798.C817_04578	NA	NA
UHGV-0203626_6	PHROG	phrog_4068	NA	unknown function
UHGV-0203626_7	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0203626_7	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0203626_7	UniRef90	UniRef90_UPI0018A97EF7	N-6 DNA methylase	NA
UHGV-0203626_7	eggNOG-mapper	1201292.DR75_1654	type I restriction-modification system	NA
UHGV-0203626_7	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0203626_7	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0203626_7	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0203626_7	Structural annotation	PF02384, PF01420, MF_01872, TIGR00497, COG0286, COG0732	NA	NA
UHGV-0203626_8	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0203626_8	eggNOG-mapper	610130.Closa_0713	NA	NA
UHGV-0203626_8	Structural annotation	PF11726	NA	NA
UHGV-0203626_11	PHROG	phrog_824	NA	unknown function
UHGV-0203626_11	UniRef90	UniRef90_A0A1Y4H4N5	VRR-NUC domain-containing protein	NA
UHGV-0203626_11	eggNOG-mapper	1232452.BAIB02000007_gene1645	VRR_NUC	NA
UHGV-0203626_11	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0203626_11	Structural annotation	PF08774	NA	NA
UHGV-0203626_12	PHROG	phrog_24368	NA	unknown function
UHGV-0203626_22	UniRef90	UniRef90_A0A3D1WNZ4	Toxin-antitoxin system, antitoxin component, Xre family protein	NA
UHGV-0203626_22	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-0203626_22	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0203626_23	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0203626_23	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0203626_23	UniRef90	UniRef90_UPI0018984762	XRE family transcriptional regulator	NA
UHGV-0203626_23	eggNOG-mapper	1121423.JONT01000002_gene2372	Peptidase S24-like	NA
UHGV-0203626_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0203626_23	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0203626_23	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0203626_23	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0203626_25	KOfam	K14059	int; integrase	NA
UHGV-0203626_25	PHROG	phrog_1	integrase	integration and excision
UHGV-0203626_25	UniRef90	UniRef90_U2UCK2	Site-specific recombinase, phage integrase family	NA
UHGV-0203626_25	eggNOG-mapper	1321782.HMPREF1986_00315	Phage integrase family	NA
UHGV-0203626_25	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0203626_25	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0203626_25	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0203626_25	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0203626_26	PHROG	phrog_14030	NA	unknown function
UHGV-0203626_26	UniRef90	UniRef90_UPI001F3A7341	SH3 domain-containing protein	NA
UHGV-0203626_26	eggNOG-mapper	411468.CLOSCI_01513	NA	NA
UHGV-0203626_26	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0203626_26	Structural annotation	PF18342, NF041850, COG3807	NA	NA
UHGV-0203626_27	PHROG	phrog_199	holin	lysis
UHGV-0203626_27	UniRef90	UniRef90_A0A417W6L6	Holin	NA
UHGV-0203626_27	eggNOG-mapper	742740.HMPREF9474_02333	Bacteriophage holin family	NA
UHGV-0203626_27	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0203626_27	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0203626_27	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0203626_27	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0203626_29	eggNOG-mapper	1232452.BAIB02000007_gene1607	NA	NA
UHGV-0203626_30	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0203626_30	PHROG	phrog_1	integrase	integration and excision
UHGV-0203626_30	UniRef90	UniRef90_A0A416L1N4	Integrase	NA
UHGV-0203626_30	eggNOG-mapper	610130.Closa_3343	Belongs to the 'phage' integrase family	NA
UHGV-0203626_30	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0203626_30	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0203626_30	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0203626_32	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0203626_32	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0203626_32	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0203626_32	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0203626_33	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0203626_33	PHROG	phrog_8745	tail fiber protein	tail
UHGV-0203626_33	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0203626_34	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0203626_34	UniRef90	UniRef90_UPI000C7C59F9	phage tail protein	NA
UHGV-0203626_34	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0203626_34	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0203626_34	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0203626_34	COG	COG4926	Phage-related protein	NA
UHGV-0203626_34	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0203626_35	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0203626_35	UniRef90	UniRef90_A0A1C5W6B6	Phage-related protein	NA
UHGV-0203626_35	eggNOG-mapper	1123263.AUKY01000068_gene490	tail component	NA
UHGV-0203626_35	COG	COG4722	Phage-related protein YomH	NA
UHGV-0203626_35	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0203626_36	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0203626_36	UniRef90	UniRef90_UPI000CF95818	phage tail tape measure protein	NA
UHGV-0203626_36	eggNOG-mapper	1035184.HMPREF1042_1328	Phage tail tape measure protein	NA
UHGV-0203626_36	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0203626_36	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0203626_36	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0203626_36	Structural annotation	COG5280	NA	NA
UHGV-0203626_37	PHROG	phrog_3033	NA	unknown function
UHGV-0203626_37	eggNOG-mapper	908340.HMPREF9406_0174	NA	NA
UHGV-0203626_38	PHROG	phrog_709	NA	unknown function
UHGV-0203626_38	Structural annotation	PF11836	NA	NA
UHGV-0203626_39	PHROG	phrog_88	major tail protein	tail
UHGV-0203626_39	UniRef90	UniRef90_UPI000C839DC3	phage tail protein	NA
UHGV-0203626_39	eggNOG-mapper	1280671.AUJH01000012_gene3144	phage major tail protein, phi13 family	NA
UHGV-0203626_39	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0203626_39	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0203626_40	eggNOG-mapper	610130.Closa_0748	NA	NA
UHGV-0203626_40	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0203626_41	UniRef90	UniRef90_A0A366JRC6	Bacteriophage HK97-gp10 putative tail-component	NA
UHGV-0203626_41	eggNOG-mapper	1145276.T479_19950	NA	NA
UHGV-0203626_41	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0203626_41	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0203626_42	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0203626_42	UniRef90	UniRef90_A0A8J6P6R3	Phage head-tail adapter protein	NA
UHGV-0203626_42	eggNOG-mapper	887929.HMP0721_1263	NA	NA
UHGV-0203626_42	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0203626_43	PHROG	phrog_5223	neck protein	connector
UHGV-0203626_43	UniRef90	UniRef90_UPI00073F29ED	head-tail connector protein	NA
UHGV-0203626_43	eggNOG-mapper	411471.SUBVAR_05853	NA	NA
UHGV-0203626_43	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0203626_43	Structural annotation	TIGR01560	NA	NA
UHGV-0203626_45	PHROG	phrog_10	major head protein	head and packaging
UHGV-0203626_45	UniRef90	UniRef90_A0A8J6P3N1	Phage major capsid protein	NA
UHGV-0203626_45	eggNOG-mapper	445975.COLSTE_02162	Phage capsid family	NA
UHGV-0203626_45	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0203626_45	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0203626_45	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0203626_45	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0203626_46	KOfam	K06904	NA	NA
UHGV-0203626_46	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0203626_46	UniRef90	UniRef90_A0A3D1WQ94	HK97 family phage prohead protease	NA
UHGV-0203626_46	eggNOG-mapper	742740.HMPREF9474_04305	Phage prohead protease, HK97 family	NA
UHGV-0203626_46	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0203626_46	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0203626_46	COG	COG3740	Phage head maturation protease	NA
UHGV-0203626_46	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0203626_47	PHROG	phrog_12	portal protein	head and packaging
UHGV-0203626_47	UniRef90	UniRef90_UPI00073E8ED5	phage portal protein	NA
UHGV-0203626_47	eggNOG-mapper	411471.SUBVAR_05850	Phage portal protein	NA
UHGV-0203626_47	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0203626_47	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0203626_47	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0203626_48	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0203626_48	UniRef90	UniRef90_UPI00073E3369	terminase large subunit	NA
UHGV-0203626_48	eggNOG-mapper	742740.HMPREF9474_04307	COG COG4626 Phage terminase-like protein, large subunit	NA
UHGV-0203626_48	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0203626_48	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0203626_48	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0203626_48	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0203626_49	PHROG	phrog_1066	NA	unknown function
UHGV-0203626_49	eggNOG-mapper	1094508.Tsac_2428	NA	NA
UHGV-0203626_50	eggNOG-mapper	1002367.HMPREF0673_01834	MaoC-like protein	NA
UHGV-0203626_50	COG	COG2030	Acyl-CoA dehydratase PaaZ	NA