UHGV-0204024

Genome information

Genome length 34,774 bps

CDS count 46

Completeness 100.00% (complete)

geNomad score 0.9664

Prediction confidence Confident

Genome information
Genome ID	UHGV-0204024
vOTU ID	vOTU-047729
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN11893798_a1_ct425@circular@Podoviridae__sp._ctrv3425
BioSample	NA
Country	Ireland
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9664
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	12.56
Jumbo phage	No

Genome content
Genome length	34,774 bps
GC content	35.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	93.87%
Average CDS length	712.04 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0204024_7	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0204024_7	eggNOG-mapper	610130.Closa_0713	NA	NA
UHGV-0204024_7	Structural annotation	PF11726	NA	NA
UHGV-0204024_9	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0204024_9	PHROG	phrog_5696	NA	unknown function
UHGV-0204024_9	UniRef90	UniRef90_A0A316Q9A1	N6_Mtase domain-containing protein	NA
UHGV-0204024_9	eggNOG-mapper	948106.AWZT01000012_gene1459	N-6 DNA Methylase	NA
UHGV-0204024_9	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0204024_9	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0204024_9	Structural annotation	PF05185, TIGR00497	NA	NA
UHGV-0204024_10	PHROG	phrog_874	NA	unknown function
UHGV-0204024_10	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0204024_10	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0204024_11	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0204024_11	UniRef90	UniRef90_A0A1Q6KRX8	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0204024_11	eggNOG-mapper	411467.BACCAP_03937	COG COG0175 3-phosphoadenosine 5-phosphosulfate sulfotransferase (PAPS reductase) FAD synthetase and related enzymes	NA
UHGV-0204024_11	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0204024_11	Structural annotation	PF01507, MF_01161, NF005316, COG1606	NA	NA
UHGV-0204024_13	PHROG	phrog_2776	NA	unknown function
UHGV-0204024_13	UniRef90	UniRef90_A0A5S4VR73	Helix-turn-helix domain-containing protein	NA
UHGV-0204024_13	eggNOG-mapper	1298920.KI911353_gene2703	NA	NA
UHGV-0204024_13	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0204024_14	UniRef90	UniRef90_R7B8M3	NA	NA
UHGV-0204024_15	PHROG	phrog_419	NA	unknown function
UHGV-0204024_15	UniRef90	UniRef90_A0A4U9RIR3	NA	NA
UHGV-0204024_15	eggNOG-mapper	476272.RUMHYD_03324	NA	NA
UHGV-0204024_16	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0204024_16	UniRef90	UniRef90_UPI0018AC14ED	Lar family restriction alleviation protein	NA
UHGV-0204024_16	eggNOG-mapper	742738.HMPREF9460_04054	Restriction alleviation protein Lar	NA
UHGV-0204024_16	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0204024_19	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0204024_19	UniRef90	UniRef90_A0A7C6S6K0	Nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-0204024_19	eggNOG-mapper	1232666.JANE01000070_gene1288	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0204024_19	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0204024_19	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0204024_19	Structural annotation	PF03819, MF_01020, NF001613, COG0140	NA	NA
UHGV-0204024_20	KOfam	K03700	recU; recombination protein U	NA
UHGV-0204024_20	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0204024_20	UniRef90	UniRef90_A0A0X1U7R7	Holliday junction resolvase RecU	NA
UHGV-0204024_20	eggNOG-mapper	1280706.AUJE01000010_gene634	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0204024_20	Pfam	PF03838	Recombination protein U	RecU
UHGV-0204024_20	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0204024_20	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0204024_22	Pfam	PF18892	NA	DUF5651
UHGV-0204024_22	Structural annotation	PF18892	NA	NA
UHGV-0204024_23	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0204024_23	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0204024_23	UniRef90	UniRef90_A0A417PJ93	Single-stranded DNA-binding protein	NA
UHGV-0204024_23	eggNOG-mapper	397290.C810_01495	Single-strand binding protein family	NA
UHGV-0204024_23	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0204024_23	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0204024_23	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0204024_23	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0204024_23	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0204024_28	PHROG	phrog_15863	NA	unknown function
UHGV-0204024_28	UniRef90	UniRef90_A0A417HVZ9	J domain-containing protein	NA
UHGV-0204024_28	eggNOG-mapper	1121342.AUCO01000030_gene2587	DnaJ molecular chaperone homology domain	NA
UHGV-0204024_28	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0204024_29	UniRef90	UniRef90_A0A3A8WLS8	XRE family transcriptional regulator	NA
UHGV-0204024_29	eggNOG-mapper	411490.ANACAC_00697	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0204024_29	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0204024_29	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0204024_30	Structural annotation	PF12993	NA	NA
UHGV-0204024_32	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0204024_32	UniRef90	UniRef90_A0A417U663	Helix-turn-helix domain-containing protein	NA
UHGV-0204024_32	eggNOG-mapper	411470.RUMGNA_02210	transposase activity	NA
UHGV-0204024_32	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0204024_32	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0204024_33	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0204024_33	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0204024_33	UniRef90	UniRef90_A0A316SB77	Terminase-like family protein	NA
UHGV-0204024_33	eggNOG-mapper	748224.HMPREF9436_02548	Terminase-like family	NA
UHGV-0204024_33	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0204024_33	COG	COG1783	Phage terminase large subunit	NA
UHGV-0204024_33	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0204024_34	PHROG	phrog_156	portal protein	head and packaging
UHGV-0204024_34	UniRef90	UniRef90_A0A8D9UH10	Portal protein	NA
UHGV-0204024_34	eggNOG-mapper	748224.HMPREF9436_01396	NA	NA
UHGV-0204024_34	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0204024_35	KOfam	K07584	NA	NA
UHGV-0204024_35	PHROG	phrog_4478	peptidase	other
UHGV-0204024_35	eggNOG-mapper	403833.Pmob_0804	Cysteine protease Prp	NA
UHGV-0204024_35	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0204024_35	COG	COG2868	NA	NA
UHGV-0204024_35	Structural annotation	PF04327, NF011125, COG2868	NA	NA
UHGV-0204024_36	PHROG	phrog_13908	NA	unknown function
UHGV-0204024_36	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0204024_37	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0204024_37	UniRef90	UniRef90_A0A1Y4WLZ7	N4-gp56 family major capsid protein	NA
UHGV-0204024_37	eggNOG-mapper	411483.FAEPRAA2165_01040	NA	NA
UHGV-0204024_37	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0204024_37	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0204024_38	PHROG	phrog_15239	NA	unknown function
UHGV-0204024_39	KOfam	K06823	COL18A; collagen type XVIII alpha	NA
UHGV-0204024_39	PHROG	phrog_25888	NA	unknown function
UHGV-0204024_39	eggNOG-mapper	476272.RUMHYD_03672	PFAM Collagen triple helix	NA
UHGV-0204024_39	COG	COG2931	Ca2+-binding protein, RTX toxin-related	NA
UHGV-0204024_40	PHROG	phrog_24451	NA	unknown function
UHGV-0204024_40	UniRef90	UniRef90_A0A3P6KYQ0	NA	NA
UHGV-0204024_40	eggNOG-mapper	908340.HMPREF9406_2565	NA	NA
UHGV-0204024_42	PHROG	phrog_12105	NA	unknown function
UHGV-0204024_43	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0204024_43	eggNOG-mapper	1321782.HMPREF1986_00351	NA	NA
UHGV-0204024_43	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0204024_44	PHROG	phrog_1899	NA	unknown function
UHGV-0204024_44	eggNOG-mapper	1226322.HMPREF1545_00783	Chaperone of endosialidase	NA
UHGV-0204024_44	Pfam	PF07902	gp58-like protein	Gp58
UHGV-0204024_45	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0204024_46	PHROG	phrog_22978	NA	unknown function
UHGV-0204024_46	eggNOG-mapper	748224.HMPREF9436_01406	NA	NA