UHGV-0204376

Genome information

Genome length 40,036 bps

CDS count 68

Completeness 98.49% (high-quality)

geNomad score 0.9781

Prediction confidence Confident

Genome information
Genome ID	UHGV-0204376
vOTU ID	vOTU-079112
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN10080935_a1_ct11648_vs1@linear@Siphoviridae__sp._ctr6g1
BioSample	SAMN10080935
Country	Cameroon
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.49% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9781
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.64
Jumbo phage	No

Genome content
Genome length	40,036 bps
GC content	52.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	90.28%
Average CDS length	537.35 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0204376_2	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0204376_2	UniRef90	UniRef90_A0A2A7B6I3	HNH domain-containing protein	NA
UHGV-0204376_2	eggNOG-mapper	610130.Closa_0739	HNH nucleases	NA
UHGV-0204376_2	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0204376_2	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0204376_3	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0204376_3	PHROG	phrog_12862	NA	unknown function
UHGV-0204376_3	UniRef90	UniRef90_UPI001EFC22B1	site-specific DNA-methyltransferase	NA
UHGV-0204376_3	eggNOG-mapper	1474867.A0A076FIB3_9PHYC	N-methyltransferase activity	NA
UHGV-0204376_3	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0204376_3	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0204376_3	Structural annotation	PF01555, MF_01057, NF010253, COG0863	NA	NA
UHGV-0204376_6	PHROG	phrog_3136	NA	unknown function
UHGV-0204376_6	UniRef90	UniRef90_UPI001C02A61B	ASCH domain-containing protein	NA
UHGV-0204376_6	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0204376_6	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0204376_6	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0204376_9	Structural annotation	PF04545	NA	NA
UHGV-0204376_10	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0204376_10	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0204376_10	UniRef90	UniRef90_A0A2A7B6Q0	ParB domain-containing protein	NA
UHGV-0204376_10	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-0204376_10	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0204376_10	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0204376_10	Structural annotation	PF02195, MF_02015, TIGR03764, COG1475	NA	NA
UHGV-0204376_12	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0204376_12	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0204376_12	UniRef90	UniRef90_A0A2A7B6H3	AAA_31 domain-containing protein	NA
UHGV-0204376_12	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-0204376_12	Pfam	PF13614	AAA domain	AAA_31
UHGV-0204376_12	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0204376_12	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0204376_14	UniRef90	UniRef90_UPI001CBE86CE	NA	NA
UHGV-0204376_14	eggNOG-mapper	748224.HMPREF9436_00735	NA	NA
UHGV-0204376_14	Pfam	PF19481	NA	DUF6017
UHGV-0204376_14	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0204376_15	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0204376_15	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0204376_15	UniRef90	UniRef90_A0A329TTF5	Single-stranded DNA-binding protein	NA
UHGV-0204376_15	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-0204376_15	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0204376_15	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0204376_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0204376_15	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0204376_15	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0204376_16	PHROG	phrog_7566	NA	unknown function
UHGV-0204376_16	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0204376_19	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0204376_19	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0204376_19	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0204376_20	PHROG	phrog_14970	NA	unknown function
UHGV-0204376_20	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0204376_20	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0204376_23	Structural annotation	PF10346, MF_00337, NF010671	NA	NA
UHGV-0204376_26	Pfam	PF12773	Double zinc ribbon	DZR
UHGV-0204376_29	Structural annotation	PF21291, TIGR03070, COG1476	NA	NA
UHGV-0204376_30	UniRef90	UniRef90_A0A2A7AM72	HTH cro/C1-type domain-containing protein	NA
UHGV-0204376_30	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0204376_30	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0204376_31	Structural annotation	PF21441, TIGR04176, COG1846	NA	NA
UHGV-0204376_34	eggNOG-mapper	394503.Ccel_2974	NA	NA
UHGV-0204376_34	Structural annotation	PF06776, COG5342	NA	NA
UHGV-0204376_37	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0204376_37	UniRef90	UniRef90_A0A2A7B6N3	HTH cro/C1-type domain-containing protein	NA
UHGV-0204376_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0204376_37	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0204376_37	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0204376_38	KOfam	K14059	int; integrase	NA
UHGV-0204376_38	PHROG	phrog_1	integrase	integration and excision
UHGV-0204376_38	UniRef90	UniRef90_A0A367GI93	Tyr recombinase domain-containing protein	NA
UHGV-0204376_38	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0204376_38	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0204376_38	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0204376_38	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0204376_39	UniRef90	UniRef90_A0A8F0WD75	RNA polymerase sigma factor/Ubiquitin-like protein	NA
UHGV-0204376_39	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0204376_40	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0204376_41	PHROG	phrog_16490	NA	unknown function
UHGV-0204376_42	PHROG	phrog_22984	NA	unknown function
UHGV-0204376_45	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0204376_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0204376_45	Structural annotation	PF01381, TIGR03070, COG1396	NA	NA
UHGV-0204376_47	Structural annotation	PF07374, MF_00245, NF001072, COG2739	NA	NA
UHGV-0204376_49	PHROG	phrog_15303	NA	unknown function
UHGV-0204376_50	PHROG	phrog_1863	NA	unknown function
UHGV-0204376_50	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0204376_51	KOfam	K07273	acm; lysozyme	NA
UHGV-0204376_51	PHROG	phrog_291	endolysin	lysis
UHGV-0204376_51	UniRef90	UniRef90_UPI001D0EE7D8	glycoside hydrolase family 25 protein	NA
UHGV-0204376_51	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0204376_51	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0204376_51	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0204376_51	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0204376_52	UniRef90	UniRef90_A5ZE05	Ser/Thr phosphatase family protein	NA
UHGV-0204376_52	eggNOG-mapper	411901.BACCAC_01116	Calcineurin-like phosphoesterase	NA
UHGV-0204376_52	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0204376_52	Structural annotation	PF10651, PF12850, MF_00905, NF008359, NF038186, COG1409	NA	NA
UHGV-0204376_54	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0204376_54	UniRef90	UniRef90_A0A2A7AM44	Prophage_tail domain-containing protein	NA
UHGV-0204376_54	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0204376_54	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0204376_54	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0204376_54	COG	COG4926	Phage-related protein	NA
UHGV-0204376_54	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0204376_55	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0204376_55	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0204376_55	eggNOG-mapper	908340.HMPREF9406_2569	phage tail	NA
UHGV-0204376_55	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0204376_55	COG	COG4722	Phage-related protein YomH	NA
UHGV-0204376_55	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0204376_56	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0204376_56	UniRef90	UniRef90_A0A2A7ALS3	TMP_3 domain-containing protein	NA
UHGV-0204376_56	eggNOG-mapper	596328.HMPREF0578_1241	phage tail tape measure protein	NA
UHGV-0204376_56	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0204376_56	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0204376_56	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0204376_56	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0204376_59	PHROG	phrog_88	major tail protein	tail
UHGV-0204376_59	UniRef90	UniRef90_G9YSC5	Phage major tail protein, phi13 family	NA
UHGV-0204376_59	eggNOG-mapper	349161.Dred_2600	NA	NA
UHGV-0204376_59	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0204376_59	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0204376_60	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0204376_60	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0204376_60	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0204376_60	Structural annotation	TIGR01725	NA	NA
UHGV-0204376_61	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0204376_61	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0204376_62	PHROG	phrog_19734	NA	unknown function
UHGV-0204376_62	UniRef90	UniRef90_A0A0D8I708	Phage head-tail joining protein	NA
UHGV-0204376_62	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0204376_62	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0204376_63	PHROG	phrog_749	NA	unknown function
UHGV-0204376_63	UniRef90	UniRef90_W7B6R4	Gp6 protein	NA
UHGV-0204376_63	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-0204376_64	PHROG	phrog_10	major head protein	head and packaging
UHGV-0204376_64	UniRef90	UniRef90_A0A2A7B712	Phage major capsid protein	NA
UHGV-0204376_64	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0204376_64	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0204376_64	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0204376_64	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0204376_64	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0204376_64	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0204376_65	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0204376_65	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0204376_65	UniRef90	UniRef90_UPI001C0ECD60	Clp protease ClpP	NA
UHGV-0204376_65	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0204376_65	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0204376_65	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0204376_65	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0204376_66	PHROG	phrog_12	portal protein	head and packaging
UHGV-0204376_66	UniRef90	UniRef90_A0A2A7B6S8	Phage portal protein	NA
UHGV-0204376_66	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0204376_66	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0204376_66	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0204376_66	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0204376_66	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0204376_67	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0204376_67	UniRef90	UniRef90_A0A2A7ALT4	Terminase	NA
UHGV-0204376_67	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0204376_67	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0204376_67	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0204376_67	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0204376_68	PHROG	phrog_13845	NA	unknown function
UHGV-0204376_68	eggNOG-mapper	1399942.U3PDR2_9CAUD	NA	NA
UHGV-0204376_68	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA