UHGV-0204936

Genome information

vOTU vOTU-020216

Genome length 25,815 bps

CDS count 44

Completeness 73.68% (medium-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-0204936
vOTU ID	vOTU-020216
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN11252257_a1_ct209791_vs1@Siphoviridae__sp._ct4yR1
BioSample	SAMN11252257
Country	Ethiopia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.68% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.13
Jumbo phage	No

Genome content
Genome length	25,815 bps
GC content	59.60%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	93.15%
Average CDS length	551.25 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0204936_1	UniRef90	UniRef90_E2ZIC9	Spo0A_C domain-containing protein	NA
UHGV-0204936_2	PHROG	phrog_15303	NA	unknown function
UHGV-0204936_3	PHROG	phrog_1863	NA	unknown function
UHGV-0204936_3	eggNOG-mapper	748224.HMPREF9436_00408	NA	NA
UHGV-0204936_4	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0204936_4	UniRef90	UniRef90_A0A3E2XB99	NA	NA
UHGV-0204936_4	eggNOG-mapper	748224.HMPREF9436_01411	NA	NA
UHGV-0204936_4	Pfam	PF14359	NA	DUF4406
UHGV-0204936_4	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0204936_5	KOfam	K07273	acm; lysozyme	NA
UHGV-0204936_5	PHROG	phrog_291	endolysin	lysis
UHGV-0204936_5	UniRef90	UniRef90_E2ZES5	Glycosyl hydrolase family 25	NA
UHGV-0204936_5	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0204936_5	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0204936_5	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0204936_5	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0204936_6	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0204936_6	Structural annotation	NF040910	NA	NA
UHGV-0204936_8	PHROG	phrog_9534	head protein	head and packaging
UHGV-0204936_8	UniRef90	UniRef90_UPI0015C5CE46	tail fiber protein	NA
UHGV-0204936_8	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-0204936_8	Structural annotation	PF21567	NA	NA
UHGV-0204936_9	PHROG	phrog_538	minor tail protein	tail
UHGV-0204936_9	UniRef90	UniRef90_A0A4U7JBL2	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0204936_9	eggNOG-mapper	755731.Clo1100_0557	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0204936_9	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0204936_9	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0204936_10	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0204936_10	UniRef90	UniRef90_A0A564T4N7	Phage tail protein	NA
UHGV-0204936_10	eggNOG-mapper	748224.HMPREF9436_00700	Phage tail protein	NA
UHGV-0204936_10	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0204936_11	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0204936_11	eggNOG-mapper	748224.HMPREF9436_00699	Phage tail tape measure protein, TP901 family	NA
UHGV-0204936_11	COG	COG1511	NA	NA
UHGV-0204936_12	PHROG	phrog_1633	NA	unknown function
UHGV-0204936_13	PHROG	phrog_1526	NA	unknown function
UHGV-0204936_13	UniRef90	UniRef90_A0A123T5V6	NA	NA
UHGV-0204936_13	eggNOG-mapper	875454.BAEW01000017_gene1589	NA	NA
UHGV-0204936_14	PHROG	phrog_117	major tail protein	tail
UHGV-0204936_14	UniRef90	UniRef90_E2ZGB2	Prophage LambdaSa1, structural protein	NA
UHGV-0204936_14	eggNOG-mapper	748224.HMPREF9436_00696	domain, Protein	NA
UHGV-0204936_14	COG	COG5492	NA	NA
UHGV-0204936_14	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0204936_15	PHROG	phrog_123	tail terminator	connector
UHGV-0204936_15	eggNOG-mapper	748224.HMPREF9436_00695	NA	NA
UHGV-0204936_15	Structural annotation	PF06141	NA	NA
UHGV-0204936_16	PHROG	phrog_387	neck protein	connector
UHGV-0204936_16	UniRef90	UniRef90_A0A4U9XLC1	NA	NA
UHGV-0204936_16	eggNOG-mapper	748224.HMPREF9436_00694	NA	NA
UHGV-0204936_17	PHROG	phrog_501	head closure Hc1	connector
UHGV-0204936_17	UniRef90	UniRef90_A0A139QHM6	Phage-associated protein	NA
UHGV-0204936_17	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-0204936_17	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0204936_18	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0204936_18	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0204936_18	eggNOG-mapper	762211.BSTEL_0628	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0204936_18	Structural annotation	PF09355	NA	NA
UHGV-0204936_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-0204936_20	UniRef90	UniRef90_A0A1Y4TJU9	Phage major capsid protein	NA
UHGV-0204936_20	eggNOG-mapper	748224.HMPREF9436_00690	Phage capsid family	NA
UHGV-0204936_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0204936_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0204936_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0204936_20	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0204936_21	PHROG	phrog_1793	head scaffolding protein	head and packaging
UHGV-0204936_21	UniRef90	UniRef90_A0A412EZF6	NA	NA
UHGV-0204936_21	eggNOG-mapper	1123263.AUKY01000068_gene501	NA	NA
UHGV-0204936_21	Structural annotation	PF14265	NA	NA
UHGV-0204936_23	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0204936_23	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-0204936_23	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-0204936_23	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-0204936_24	PHROG	phrog_104	portal protein	head and packaging
UHGV-0204936_24	UniRef90	UniRef90_A0A3E2U200	Phage portal protein	NA
UHGV-0204936_24	eggNOG-mapper	748224.HMPREF9436_01468	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0204936_24	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0204936_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0204936_25	UniRef90	UniRef90_UPI001F1A3C47	terminase large subunit	NA
UHGV-0204936_25	eggNOG-mapper	748224.HMPREF9436_01467	phage terminase, large subunit	NA
UHGV-0204936_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0204936_25	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0204936_26	UniRef90	UniRef90_R6GFM0	Conserved domain protein	NA
UHGV-0204936_26	Structural annotation	PF19962	NA	NA
UHGV-0204936_27	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0204936_27	UniRef90	UniRef90_UPI0015F33F36	HNH endonuclease	NA
UHGV-0204936_27	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA
UHGV-0204936_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0204936_28	UniRef90	UniRef90_A0A353BRJ1	Sigma70_r4 domain-containing protein	NA
UHGV-0204936_28	eggNOG-mapper	748224.HMPREF9436_01463	NA	NA
UHGV-0204936_28	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0204936_30	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0204936_30	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0204936_30	UniRef90	UniRef90_A0A3E2U3E3	DNA helicase	NA
UHGV-0204936_30	eggNOG-mapper	411471.SUBVAR_05838	Participates in initiation and elongation during chromosome replication	NA
UHGV-0204936_30	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0204936_30	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0204936_30	COG	COG0305	Replicative DNA helicase	NA
UHGV-0204936_30	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0204936_31	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0204936_31	UniRef90	UniRef90_A0A3E2U1Y3	Helix-turn-helix domain-containing protein	NA
UHGV-0204936_31	eggNOG-mapper	411471.SUBVAR_05835	Helix-turn-helix domain	NA
UHGV-0204936_31	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0204936_31	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0204936_31	Structural annotation	PF05584, MF_01819, TIGR01610, COG5625	NA	NA
UHGV-0204936_32	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0204936_32	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0204936_32	UniRef90	UniRef90_A0A3E2U1Y5	Single-stranded DNA-binding protein	NA
UHGV-0204936_32	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-0204936_32	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0204936_32	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0204936_32	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0204936_32	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0204936_32	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0204936_33	PHROG	phrog_7566	NA	unknown function
UHGV-0204936_33	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0204936_34	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0204936_34	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0204936_34	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0204936_35	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0204936_40	Structural annotation	PF07875, TIGR02501	NA	NA
UHGV-0204936_43	UniRef90	UniRef90_UPI001BC026BF	NA	NA
UHGV-0204936_43	eggNOG-mapper	1519439.JPJG01000059_gene1909	NA	NA
UHGV-0204936_44	PHROG	phrog_3777	NA	unknown function
UHGV-0204936_44	UniRef90	UniRef90_A0A396LZ12	NA	NA
UHGV-0204936_44	eggNOG-mapper	1451261.AS96_12200	NA	NA
UHGV-0204936_44	Pfam	PF12957	NA	DUF3846
UHGV-0204936_44	Structural annotation	PF12957	NA	NA