UHGV-0205174

Genome information

vOTU vOTU-020217

Genome length 43,200 bps

CDS count 50

Completeness 77.52% (medium-quality)

geNomad score 0.9502

Prediction confidence Confident

Genome information
Genome ID	UHGV-0205174
vOTU ID	vOTU-020217
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SRS012969_a1_ct36594_vs1@Siphoviridae__sp._ctyPX1
BioSample	SAMN00034187
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	77.52% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9502
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	2.66
Jumbo phage	No

Genome content
Genome length	43,200 bps
GC content	45.95%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	94.92%
Average CDS length	826.68 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0205174_1	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0205174_1	PHROG	phrog_19856	NA	unknown function
UHGV-0205174_1	UniRef90	UniRef90_A0A1T4Z1T7	Restriction system protein	NA
UHGV-0205174_1	eggNOG-mapper	1033734.CAET01000005_gene3734	Mrr N-terminal domain	NA
UHGV-0205174_1	PADLOC	mREase_IV_00003	Type IV methyl-directed restriction enzyme	RM
UHGV-0205174_1	Pfam	PF14338	Mrr N-terminal domain	Mrr_N
UHGV-0205174_1	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0205174_1	COG	COG1715	Restriction endonuclease Mrr	NA
UHGV-0205174_1	Structural annotation	PF04471, PF14338, NF041411, TIGR03433, COG1715	NA	NA
UHGV-0205174_3	PHROG	phrog_394	tail protein	tail
UHGV-0205174_3	eggNOG-mapper	1283077.M1I7K5_9CAUD	Pfam:Tube	NA
UHGV-0205174_3	Structural annotation	PF17212	NA	NA
UHGV-0205174_6	Structural annotation	PF09056	NA	NA
UHGV-0205174_10	PHROG	phrog_1281	NA	unknown function
UHGV-0205174_10	UniRef90	UniRef90_A0A0L7B6C0	NA	NA
UHGV-0205174_10	eggNOG-mapper	1173029.JH980292_gene3352	NA	NA
UHGV-0205174_10	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0205174_10	COG	COG3600	NA	NA
UHGV-0205174_10	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0205174_12	PHROG	phrog_5143	NA	unknown function
UHGV-0205174_12	eggNOG-mapper	1166948.JPZL01000002_gene1858	acetyltransferase	NA
UHGV-0205174_12	Pfam	PF18763	ddrB-like ParB superfamily domain	ddrB-ParB
UHGV-0205174_12	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-0205174_12	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-0205174_12	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0205174_15	PHROG	phrog_376	tail protein	tail
UHGV-0205174_15	eggNOG-mapper	278957.ABEA03000173_gene2411	NA	NA
UHGV-0205174_17	PHROG	phrog_3742	NA	unknown function
UHGV-0205174_17	eggNOG-mapper	570952.ATVH01000019_gene762	NA	NA
UHGV-0205174_19	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0205174_19	UniRef90	UniRef90_UPI001294A189	portal protein	NA
UHGV-0205174_19	eggNOG-mapper	1283077.M1INZ1_9CAUD	Bacteriophage head to tail connecting protein	NA
UHGV-0205174_19	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0205174_19	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0205174_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0205174_22	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0205174_22	UniRef90	UniRef90_UPI00138941EA	PBSX family phage terminase large subunit	NA
UHGV-0205174_22	eggNOG-mapper	762968.HMPREF9441_00581	Terminase RNAseH like domain	NA
UHGV-0205174_22	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0205174_22	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0205174_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-0205174_22	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0205174_23	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0205174_23	UniRef90	UniRef90_UPI0004D93750	terminase small subunit	NA
UHGV-0205174_23	eggNOG-mapper	359.CN09_09290	NA	NA
UHGV-0205174_23	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0205174_24	Pfam	PF13711	NA	DUF4160
UHGV-0205174_26	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0205174_26	UniRef90	UniRef90_A0A226QS88	SAM-dependent methyltransferase	NA
UHGV-0205174_26	eggNOG-mapper	469604.HMPREF0946_01120	methyltransferase	NA
UHGV-0205174_26	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0205174_26	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0205174_26	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0205174_27	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0205174_27	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0205174_27	UniRef90	UniRef90_UPI0015F77E42	Lar family restriction alleviation protein	NA
UHGV-0205174_27	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0205174_27	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0205174_27	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0205174_27	Structural annotation	PF05129, NF007260	NA	NA
UHGV-0205174_28	PHROG	phrog_874	NA	unknown function
UHGV-0205174_28	eggNOG-mapper	1163409.UUA_08871	NA	NA
UHGV-0205174_28	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0205174_34	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0205174_34	UniRef90	UniRef90_A0A2D9CLA8	MazG domain-containing protein	NA
UHGV-0205174_34	eggNOG-mapper	1120950.KB892751_gene6729	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0205174_34	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0205174_34	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0205174_34	Structural annotation	PF12643, MF_01020, NF002747, COG1694	NA	NA
UHGV-0205174_35	PHROG	phrog_5810	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0205174_35	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-0205174_36	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0205174_36	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0205174_36	UniRef90	UniRef90_A0A1V5IZQ0	Endodeoxyribonuclease RusA	NA
UHGV-0205174_36	eggNOG-mapper	1121091.AUMP01000032_gene3086	holliday junction resolvase	NA
UHGV-0205174_36	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0205174_36	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0205174_38	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0205174_38	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0205174_38	UniRef90	UniRef90_R7L882	Single-stranded DNA-binding protein	NA
UHGV-0205174_38	eggNOG-mapper	583355.Caka_1586	Single-stranded DNA-binding protein	NA
UHGV-0205174_38	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0205174_38	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0205174_38	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0205174_38	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0205174_38	Structural annotation	PF00436, MF_00984, NF005851, COG0629	NA	NA
UHGV-0205174_39	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0205174_39	UniRef90	UniRef90_A0A6J5L2W9	Recombinase NinB	NA
UHGV-0205174_39	eggNOG-mapper	1123508.JH636439_gene1914	NA	NA
UHGV-0205174_39	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0205174_40	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0205174_40	UniRef90	UniRef90_UPI0018987C03	ERF family protein	NA
UHGV-0205174_40	eggNOG-mapper	929506.CbC4_1193	ERF superfamily	NA
UHGV-0205174_40	Pfam	PF04404	ERF superfamily	ERF
UHGV-0205174_41	KOfam	K07501	K07501; 3'-5' exonuclease	NA
UHGV-0205174_41	PHROG	phrog_403	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0205174_41	UniRef90	UniRef90_A0A7W1VVN3	Ribonuclease H-like domain-containing protein	NA
UHGV-0205174_41	eggNOG-mapper	107636.JQNK01000009_gene1896	DNA polymerase family B, exonuclease domain	NA
UHGV-0205174_41	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-0205174_41	Structural annotation	PF13482, MF_00157, NF005838, COG3359	NA	NA
UHGV-0205174_44	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-0205174_44	PHROG	phrog_923	NA	unknown function
UHGV-0205174_44	Pfam	PF13599	Pentapeptide repeats (9 copies)	Pentapeptide_4
UHGV-0205174_44	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0205174_44	Structural annotation	PF13599, NF033086, COG1357	NA	NA
UHGV-0205174_48	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0205174_48	UniRef90	UniRef90_A0A2H0UHM8	Mrr_cat domain-containing protein	NA
UHGV-0205174_48	eggNOG-mapper	50960.LS81_07910	Restriction endonuclease	NA
UHGV-0205174_48	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0205174_48	Structural annotation	PF04471, MF_00722, NF002876, COG1787	NA	NA
UHGV-0205174_49	PHROG	phrog_1	integrase	integration and excision
UHGV-0205174_49	UniRef90	UniRef90_A0A1Q6UMN4	Core-binding (CB) domain-containing protein	NA
UHGV-0205174_49	eggNOG-mapper	382464.ABSI01000005_gene1394	DNA integration	NA
UHGV-0205174_49	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0205174_49	Structural annotation	PF00589, PF13495, MF_02055, TIGR02224, COG4973	NA	NA
UHGV-0205174_50	KOfam	K15986	ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1]	NA
UHGV-0205174_50	UniRef90	UniRef90_A0A2G4FB15	Inorganic diphosphatase (Fragment)	NA
UHGV-0205174_50	eggNOG-mapper	583355.Caka_2770	DHHA2	NA
UHGV-0205174_50	Pfam	PF02833	DHHA2 domain	DHHA2
UHGV-0205174_50	COG	COG1227	Inorganic pyrophosphatase/exopolyphosphatase	NA