UHGV-0205303

Genome information

vOTU vOTU-061994

Genome length 50,598 bps

CDS count 83

Completeness 93.52% (high-quality)

geNomad score 0.9789

Prediction confidence Confident

Genome information
Genome ID	UHGV-0205303
vOTU ID	vOTU-061994
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN09781759_a1_ct259779_vs1@Myoviridae__sp._ctv0Q1
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.52% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9789
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.97
Jumbo phage	No

Genome content
Genome length	50,598 bps
GC content	39.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	83
CDS density	87.16%
Average CDS length	533.02 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0205303_2	PHROG	phrog_27197	NA	unknown function
UHGV-0205303_2	eggNOG-mapper	886882.PPSC2_p0363	regulation of DNA-templated transcription, elongation	NA
UHGV-0205303_2	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0205303_3	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-0205303_3	PHROG	phrog_19890	NA	unknown function
UHGV-0205303_3	UniRef90	UniRef90_A0A352SFF8	SLT domain-containing protein	NA
UHGV-0205303_3	eggNOG-mapper	1410650.JHWL01000003_gene2854	lytic transglycosylase activity	NA
UHGV-0205303_3	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0205303_3	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0205303_3	Structural annotation	PF01464, MF_01381, NF011856, COG0741	NA	NA
UHGV-0205303_7	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0205303_7	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0205303_7	UniRef90	UniRef90_A0A8D9PGW5	Chromosome partition protein	NA
UHGV-0205303_7	eggNOG-mapper	1232453.BAIF02000057_gene1134	nuclear chromosome segregation	NA
UHGV-0205303_7	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0205303_7	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0205303_8	Structural annotation	PF02237, MF_00257, NF037951, COG4013	NA	NA
UHGV-0205303_9	Structural annotation	PF09629, PF08962, COG4014	NA	NA
UHGV-0205303_10	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0205303_10	UniRef90	UniRef90_A0A412RR22	Phage recombination protein Bet	NA
UHGV-0205303_10	eggNOG-mapper	397290.C810_01467	Phage recombination protein Bet	NA
UHGV-0205303_10	Pfam	PF03837	RecT family	RecT
UHGV-0205303_10	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0205303_10	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0205303_10	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0205303_11	KOfam	K06940	NA	NA
UHGV-0205303_11	PHROG	phrog_32498	NA	unknown function
UHGV-0205303_11	UniRef90	UniRef90_A0A173SAY4	Flagellin N-methylase	NA
UHGV-0205303_11	eggNOG-mapper	397290.C810_01479	Putative zinc- or iron-chelating domain	NA
UHGV-0205303_11	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0205303_12	PHROG	phrog_25456	NA	unknown function
UHGV-0205303_13	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0205303_13	UniRef90	UniRef90_A0A412RQP5	PAPS_reduct domain-containing protein	NA
UHGV-0205303_13	eggNOG-mapper	1151292.QEW_4547	NA	NA
UHGV-0205303_13	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0205303_13	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0205303_13	Structural annotation	PF01507, NF002537, COG0175	NA	NA
UHGV-0205303_14	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0205303_14	UniRef90	UniRef90_A0A412RQR2	PAPS_reduct domain-containing protein	NA
UHGV-0205303_14	eggNOG-mapper	1280696.ATVY01000096_gene1971	NA	NA
UHGV-0205303_14	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0205303_14	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0205303_14	Structural annotation	PF01507, MF_00064, TIGR02055, COG0175	NA	NA
UHGV-0205303_15	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0205303_15	UniRef90	UniRef90_R7BIJ8	Putative phage-related hydrolase	NA
UHGV-0205303_15	eggNOG-mapper	1122985.HMPREF1991_02241	NA	NA
UHGV-0205303_15	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0205303_15	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0205303_16	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0205303_16	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-0205303_16	eggNOG-mapper	1232453.BAIF02000057_gene1138	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0205303_16	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0205303_16	Structural annotation	PF02112, MF_00457, NF041851, COG2220	NA	NA
UHGV-0205303_18	eggNOG-mapper	1235790.C805_00035	NA	NA
UHGV-0205303_19	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0205303_21	PHROG	phrog_8684	NA	unknown function
UHGV-0205303_21	UniRef90	UniRef90_UPI00156EBF78	YopX family protein	NA
UHGV-0205303_21	eggNOG-mapper	742735.HMPREF9467_00920	YopX protein	NA
UHGV-0205303_21	Pfam	PF09643	YopX protein	YopX
UHGV-0205303_21	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0205303_21	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0205303_22	PHROG	phrog_874	NA	unknown function
UHGV-0205303_22	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-0205303_22	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0205303_22	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0205303_23	eggNOG-mapper	97139.C824_00134	NA	NA
UHGV-0205303_25	PHROG	phrog_19106	NA	unknown function
UHGV-0205303_25	UniRef90	UniRef90_R6RVQ6	GIY-YIG domain-containing protein	NA
UHGV-0205303_25	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0205303_25	Structural annotation	TIGR01453	NA	NA
UHGV-0205303_26	eggNOG-mapper	397290.C810_01505	NA	NA
UHGV-0205303_27	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0205303_27	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0205303_27	UniRef90	UniRef90_A0A412KF70	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0205303_27	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-0205303_27	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0205303_27	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0205303_27	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0205303_27	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0205303_27	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0205303_28	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0205303_28	PHROG	phrog_17284	NA	unknown function
UHGV-0205303_28	UniRef90	UniRef90_UPI001D094304	DNA cytosine methyltransferase	NA
UHGV-0205303_28	eggNOG-mapper	562981.HMPREF0428_01833	C-5 cytosine-specific DNA methylase	NA
UHGV-0205303_28	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-0205303_28	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0205303_28	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0205303_29	PHROG	phrog_6251	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UHGV-0205303_29	UniRef90	UniRef90_A0A2W1LTU7	Replication protein	NA
UHGV-0205303_29	eggNOG-mapper	1231057.AMGD01000018_gene3636	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0205303_29	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0205303_29	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0205303_29	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0205303_29	Structural annotation	PF09524, PF04492, TIGR02220, TIGR01714	NA	NA
UHGV-0205303_30	PHROG	phrog_9804	NA	unknown function
UHGV-0205303_30	UniRef90	UniRef90_A0A412RQW3	Inhibitor_G39P domain-containing protein	NA
UHGV-0205303_30	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0205303_30	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0205303_30	Structural annotation	PF11417	NA	NA
UHGV-0205303_33	PHROG	phrog_16129	excisionase	integration and excision
UHGV-0205303_33	UniRef90	UniRef90_R6C2W3	DNA binding domain excisionase family	NA
UHGV-0205303_33	eggNOG-mapper	411489.CLOL250_01459	Excisionase from transposon Tn916	NA
UHGV-0205303_33	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-0205303_33	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0205303_33	Structural annotation	PF09035, TIGR01764, COG2771, COG3311	NA	NA
UHGV-0205303_34	KOfam	K14059	int; integrase	NA
UHGV-0205303_34	PHROG	phrog_1	integrase	integration and excision
UHGV-0205303_34	UniRef90	UniRef90_R6CA87	Site-specific recombinase phage integrase family	NA
UHGV-0205303_34	eggNOG-mapper	658088.HMPREF0987_01414	Phage integrase family	NA
UHGV-0205303_34	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0205303_34	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0205303_34	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0205303_34	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0205303_36	PHROG	phrog_21718	NA	unknown function
UHGV-0205303_36	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0205303_36	Structural annotation	NF033819	NA	NA
UHGV-0205303_37	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0205303_38	PHROG	phrog_16490	NA	unknown function
UHGV-0205303_38	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0205303_40	PHROG	phrog_20016	NA	unknown function
UHGV-0205303_40	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0205303_40	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0205303_40	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0205303_41	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0205303_42	PHROG	phrog_1233	NA	unknown function
UHGV-0205303_42	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-0205303_42	Structural annotation	PF20352, COG2856	NA	NA
UHGV-0205303_44	eggNOG-mapper	469596.HMPREF9488_00919	NA	NA
UHGV-0205303_47	PHROG	phrog_31631	NA	unknown function
UHGV-0205303_48	eggNOG-mapper	1235799.C818_04245	NA	NA
UHGV-0205303_51	UniRef90	UniRef90_A0A8D9UIS5	DNA-packaging protein	NA
UHGV-0205303_51	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0205303_52	PHROG	phrog_21026	NA	unknown function
UHGV-0205303_53	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0205303_53	UniRef90	UniRef90_UPI00156E6FB9	nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-0205303_53	eggNOG-mapper	411473.RUMCAL_00277	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0205303_53	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0205303_53	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0205303_53	Structural annotation	PF03819, MF_01020, NF001613, COG0140	NA	NA
UHGV-0205303_55	UniRef90	UniRef90_UPI001D011ACB	zinc ribbon domain-containing protein	NA
UHGV-0205303_57	UniRef90	UniRef90_A0A8D9PGN8	Acetyl-coA carboxylase zinc finger domain protein	NA
UHGV-0205303_59	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0205303_59	PHROG	phrog_1	integrase	integration and excision
UHGV-0205303_59	UniRef90	UniRef90_A0A3D5T917	Integrase	NA
UHGV-0205303_59	eggNOG-mapper	1280706.AUJE01000010_gene647	Belongs to the 'phage' integrase family	NA
UHGV-0205303_59	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0205303_59	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0205303_61	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0205303_61	UniRef90	UniRef90_R6E548	Prophage pi1 protein 29	NA
UHGV-0205303_61	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0205303_62	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0205303_62	UniRef90	UniRef90_UPI001D009E65	phage terminase large subunit	NA
UHGV-0205303_62	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0205303_62	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0205303_62	COG	COG5410	NA	NA
UHGV-0205303_62	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0205303_63	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0205303_63	UniRef90	UniRef90_A0A415TAG9	NA	NA
UHGV-0205303_63	eggNOG-mapper	1219626.HMPREF1639_07135	sigma factor activity	NA
UHGV-0205303_63	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0205303_63	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0205303_64	PHROG	phrog_64	portal protein	head and packaging
UHGV-0205303_64	UniRef90	UniRef90_R6CA99	SPP1 family phage portal protein	NA
UHGV-0205303_64	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0205303_64	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0205303_64	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0205303_65	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0205303_66	eggNOG-mapper	1232453.BAIF02000058_gene1627	NA	NA
UHGV-0205303_67	PHROG	phrog_29	major head protein	head and packaging
UHGV-0205303_67	UniRef90	UniRef90_UPI001BB87CDE	Major capsid protein	NA
UHGV-0205303_67	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0205303_67	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0205303_67	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0205303_68	Structural annotation	PF21169	NA	NA
UHGV-0205303_69	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0205303_69	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0205303_70	eggNOG-mapper	1232452.BAIB02000007_gene1606	NA	NA
UHGV-0205303_71	PHROG	phrog_443	holin	lysis
UHGV-0205303_71	UniRef90	UniRef90_UPI001D0979AE	holin	NA
UHGV-0205303_71	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-0205303_71	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0205303_71	Structural annotation	PF16945	NA	NA
UHGV-0205303_72	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0205303_73	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-0205303_73	eggNOG-mapper	397290.C810_01411	NA	NA
UHGV-0205303_73	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0205303_74	Structural annotation	PF05657	NA	NA
UHGV-0205303_75	UniRef90	UniRef90_R7BGF5	Phage tail protein	NA
UHGV-0205303_75	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0205303_76	PHROG	phrog_36112	NA	unknown function
UHGV-0205303_76	eggNOG-mapper	1298920.KI911353_gene2651	NA	NA
UHGV-0205303_76	Structural annotation	PF11836, TIGR01674	NA	NA
UHGV-0205303_78	KOfam	K07273	acm; lysozyme	NA
UHGV-0205303_78	PHROG	phrog_291	endolysin	lysis
UHGV-0205303_78	UniRef90	UniRef90_UPI001D05F2B6	peptidoglycan-binding protein	NA
UHGV-0205303_78	eggNOG-mapper	1235800.C819_00458	Glycosyl hydrolases family 25	NA
UHGV-0205303_78	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0205303_78	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0205303_78	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0205303_78	Structural annotation	PF01183, PF01471, MF_02227, NF007360, COG3757, COG3409	NA	NA
UHGV-0205303_79	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0205303_79	UniRef90	UniRef90_A0A173UHS1	Phage-related protein	NA
UHGV-0205303_79	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0205303_79	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0205303_79	Structural annotation	PF20155, MF_04138	NA	NA
UHGV-0205303_80	PHROG	phrog_806	NA	unknown function
UHGV-0205303_80	UniRef90	UniRef90_A0A173T618	Telomeric repeat-binding factor 2	NA
UHGV-0205303_80	eggNOG-mapper	397291.C804_05803	response to antibiotic	NA
UHGV-0205303_80	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0205303_80	Pfam	PF11611	NA	DUF4352
UHGV-0205303_80	COG	COG4640	NA	NA
UHGV-0205303_81	PHROG	phrog_1194	NA	unknown function
UHGV-0205303_81	eggNOG-mapper	1304866.K413DRAFT_3047	NA	NA
UHGV-0205303_81	Pfam	PF20458	NA	DUF6711
UHGV-0205303_81	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0205303_82	PHROG	phrog_18190	NA	unknown function
UHGV-0205303_82	eggNOG-mapper	1449050.JNLE01000003_gene3879	NA	NA