UHGV-0205430

Genome information

Genome length 31,493 bps

CDS count 50

Completeness 97.64% (high-quality)

geNomad score 0.9809

Prediction confidence Confident

Genome information
Genome ID	UHGV-0205430
vOTU ID	vOTU-007769
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SRS019178_a1_ct20548_vs01@Caudovirales__sp._ct7gc56@linear
BioSample	SAMN00040396
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.64% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9809
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.68
Jumbo phage	No

Genome content
Genome length	31,493 bps
GC content	52.29%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	88.96%
Average CDS length	564.36 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0205430_1	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0205430_1	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-0205430_1	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0205430_1	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0205430_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0205430_2	UniRef90	UniRef90_A0A0D8IV16	Terminase	NA
UHGV-0205430_2	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0205430_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0205430_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0205430_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0205430_2	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0205430_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0205430_3	UniRef90	UniRef90_A0A0D8IVL0	Phage portal protein	NA
UHGV-0205430_3	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-0205430_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0205430_3	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0205430_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0205430_3	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0205430_4	KOfam	K06904	NA	NA
UHGV-0205430_4	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0205430_4	UniRef90	UniRef90_A0A1C6H687	Phage prohead protease, HK97 family	NA
UHGV-0205430_4	eggNOG-mapper	1226322.HMPREF1545_00115	Phage prohead protease, HK97 family	NA
UHGV-0205430_4	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0205430_4	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0205430_4	COG	COG3740	Phage head maturation protease	NA
UHGV-0205430_4	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0205430_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0205430_5	UniRef90	UniRef90_UPI000679B959	phage major capsid protein	NA
UHGV-0205430_5	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-0205430_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0205430_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0205430_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0205430_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0205430_6	PHROG	phrog_2550	NA	unknown function
UHGV-0205430_6	UniRef90	UniRef90_UPI001E35E63D	phage head-tail connector protein	NA
UHGV-0205430_6	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0205430_6	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0205430_7	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0205430_7	UniRef90	UniRef90_UPI0013024D32	phage head closure protein	NA
UHGV-0205430_7	eggNOG-mapper	411471.SUBVAR_05854	NA	NA
UHGV-0205430_7	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0205430_7	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0205430_8	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0205430_8	UniRef90	UniRef90_A0A8J6PH82	HK97 gp10 family phage protein	NA
UHGV-0205430_8	eggNOG-mapper	411471.SUBVAR_05855	NA	NA
UHGV-0205430_8	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0205430_8	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0205430_9	PHROG	phrog_78	tail terminator	connector
UHGV-0205430_9	eggNOG-mapper	411471.SUBVAR_05856	NA	NA
UHGV-0205430_9	Structural annotation	PF20765	NA	NA
UHGV-0205430_10	PHROG	phrog_88	major tail protein	tail
UHGV-0205430_10	UniRef90	UniRef90_D1PND6	Phage major tail protein, phi13 family	NA
UHGV-0205430_10	eggNOG-mapper	411471.SUBVAR_05857	phage major tail protein, phi13 family	NA
UHGV-0205430_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0205430_10	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0205430_11	PHROG	phrog_709	NA	unknown function
UHGV-0205430_11	eggNOG-mapper	411471.SUBVAR_05858	NA	NA
UHGV-0205430_11	Structural annotation	PF11836	NA	NA
UHGV-0205430_12	PHROG	phrog_3033	NA	unknown function
UHGV-0205430_12	eggNOG-mapper	1280671.AUJH01000012_gene3142	NA	NA
UHGV-0205430_13	PHROG	phrog_5755	tail length tape measure protein	tail
UHGV-0205430_13	UniRef90	UniRef90_A0A1C6H5M9	Phage-related minor tail protein	NA
UHGV-0205430_13	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-0205430_13	COG	COG5412	Phage-related protein	NA
UHGV-0205430_13	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0205430_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0205430_14	UniRef90	UniRef90_A0A1C6H6D2	Phage-related protein	NA
UHGV-0205430_14	eggNOG-mapper	1408424.JHYI01000032_gene3812	tail component	NA
UHGV-0205430_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-0205430_14	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0205430_15	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0205430_15	UniRef90	UniRef90_UPI001968120D	phage tail protein	NA
UHGV-0205430_15	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0205430_15	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0205430_15	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0205430_15	COG	COG4926	Phage-related protein	NA
UHGV-0205430_15	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0205430_16	eggNOG-mapper	1321782.HMPREF1986_02279	COG NOG18825 non supervised orthologous group	NA
UHGV-0205430_16	Structural annotation	PF10651, PF19789, COG2372	NA	NA
UHGV-0205430_17	PHROG	phrog_1863	NA	unknown function
UHGV-0205430_17	eggNOG-mapper	665956.HMPREF1032_02709	NA	NA
UHGV-0205430_18	PHROG	phrog_443	holin	lysis
UHGV-0205430_18	UniRef90	UniRef90_UPI0002E2AC7F	holin	NA
UHGV-0205430_18	eggNOG-mapper	1235800.C819_01425	Putative lactococcus lactis phage r1t holin	NA
UHGV-0205430_18	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0205430_18	Structural annotation	PF16945	NA	NA
UHGV-0205430_19	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0205430_19	PHROG	phrog_20388	endolysin	lysis
UHGV-0205430_19	UniRef90	UniRef90_A0A374UNP8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0205430_19	eggNOG-mapper	1203606.HMPREF1526_01931	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0205430_19	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0205430_19	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0205430_19	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0205430_22	UniRef90	UniRef90_A0A355JD13	XRE family transcriptional regulator	NA
UHGV-0205430_22	eggNOG-mapper	471855.Shel_02750	Helix-turn-helix XRE-family like proteins	NA
UHGV-0205430_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0205430_22	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0205430_22	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0205430_24	KOfam	K14059	int; integrase	NA
UHGV-0205430_24	PHROG	phrog_1	integrase	integration and excision
UHGV-0205430_24	UniRef90	UniRef90_UPI00164B8B01	site-specific integrase	NA
UHGV-0205430_24	eggNOG-mapper	861454.HMPREF9099_00328	Phage integrase family	NA
UHGV-0205430_24	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0205430_24	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0205430_24	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0205430_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0205430_25	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0205430_26	PHROG	phrog_17572	NA	unknown function
UHGV-0205430_26	UniRef90	UniRef90_A0A0H4LIJ8	Prophage ps2 protein 03	NA
UHGV-0205430_26	eggNOG-mapper	1499683.CCFF01000017_gene3026	NA	NA
UHGV-0205430_26	AcrCatalog	cluster_25152	NA	NA
UHGV-0205430_26	Structural annotation	PF13783, MF_01122	NA	NA
UHGV-0205430_28	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0205430_28	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0205430_28	UniRef90	UniRef90_A0A1Q6RKG1	HTH cro/C1-type domain-containing protein	NA
UHGV-0205430_28	eggNOG-mapper	97138.C820_01960	Helix-turn-helix XRE-family like proteins	NA
UHGV-0205430_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0205430_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0205430_28	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0205430_31	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-0205430_34	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0205430_34	UniRef90	UniRef90_A0A410PZR1	Siphovirus Gp157 family protein	NA
UHGV-0205430_34	eggNOG-mapper	334390.LAF_0462	Siphovirus Gp157	NA
UHGV-0205430_34	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0205430_34	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0205430_35	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0205430_35	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0205430_35	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0205430_35	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0205430_36	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0205430_36	UniRef90	UniRef90_A0A2Z4Q9W9	NinB	NA
UHGV-0205430_36	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0205430_36	Structural annotation	PF05772	NA	NA
UHGV-0205430_37	PHROG	phrog_7566	NA	unknown function
UHGV-0205430_37	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0205430_37	eggNOG-mapper	1507.HMPREF0262_00433	NA	NA
UHGV-0205430_38	PHROG	phrog_20437	DNA replication initiation	DNA, RNA and nucleotide metabolism
UHGV-0205430_38	UniRef90	UniRef90_A0A1Y4EXZ8	NA	NA
UHGV-0205430_38	eggNOG-mapper	428125.CLOLEP_01821	NA	NA
UHGV-0205430_38	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0205430_38	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0205430_38	Structural annotation	PF14297	NA	NA
UHGV-0205430_39	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0205430_39	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0205430_39	UniRef90	UniRef90_A0A3D0LZW1	Bac_DnaA domain-containing protein	NA
UHGV-0205430_39	eggNOG-mapper	428125.CLOLEP_01820	NA	NA
UHGV-0205430_39	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0205430_39	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0205430_39	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0205430_40	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0205430_40	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0205430_40	UniRef90	UniRef90_A0A352RPR0	Single-stranded DNA-binding protein	NA
UHGV-0205430_40	eggNOG-mapper	693746.OBV_19910	Single-strand binding protein family	NA
UHGV-0205430_40	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0205430_40	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0205430_40	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0205430_40	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0205430_40	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0205430_41	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0205430_41	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0205430_41	UniRef90	UniRef90_UPI000A26EB57	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0205430_41	eggNOG-mapper	411459.RUMOBE_01038	COG COG4570 Holliday junction resolvase	NA
UHGV-0205430_41	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0205430_41	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0205430_41	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0205430_46	PHROG	phrog_1008	DNA methyltransferase	other
UHGV-0205430_46	UniRef90	UniRef90_A0A345KQM6	DNA cytosine methyltransferase	NA
UHGV-0205430_46	eggNOG-mapper	1589750.A0A0C5AEL6_9CAUD	NA	NA
UHGV-0205430_48	UniRef90	UniRef90_A0A3A9EZN6	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0205430_48	eggNOG-mapper	1111134.HMPREF1253_1193	NA	NA
UHGV-0205430_48	Structural annotation	PF07374	NA	NA
UHGV-0205430_49	PHROG	phrog_21498	NA	unknown function
UHGV-0205430_49	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-0205430_49	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0205430_49	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0205430_50	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0205430_50	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0205430_50	UniRef90	UniRef90_A0A2V2GQ57	HNH endonuclease	NA
UHGV-0205430_50	eggNOG-mapper	1226322.HMPREF1545_00111	HNH nucleases	NA
UHGV-0205430_50	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0205430_50	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0205430_50	Structural annotation	PF05766, NF008448	NA	NA