UHGV-0205795

Genome information

Genome length 39,269 bps

CDS count 68

Completeness 97.61% (high-quality)

geNomad score 0.9774

Prediction confidence Confident

Genome information
Genome ID	UHGV-0205795
vOTU ID	vOTU-065354
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN10290180_a1_ct10800_vs1@linear@Unclassified_virus__sp._ct1wq1
BioSample	SAMN10290180
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.61% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9774
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.06
Jumbo phage	No

Genome content
Genome length	39,269 bps
GC content	42.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	92.66%
Average CDS length	538.94 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0205795_2	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0205795_2	UniRef90	UniRef90_A0A845QMQ7	Terminase	NA
UHGV-0205795_2	eggNOG-mapper	755731.Clo1100_2438	TIGRFAM Phage	NA
UHGV-0205795_2	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0205795_2	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0205795_2	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0205795_2	COG	COG5362	Phage terminase large subunit	NA
UHGV-0205795_2	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0205795_4	PHROG	phrog_156	portal protein	head and packaging
UHGV-0205795_4	eggNOG-mapper	1232449.BAHV02000016_gene1822	NA	NA
UHGV-0205795_4	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0205795_6	PHROG	phrog_267	major head protein	head and packaging
UHGV-0205795_6	UniRef90	UniRef90_A0A7C6CNA9	P22 coat protein-protein 5 domain protein	NA
UHGV-0205795_6	eggNOG-mapper	665956.HMPREF1032_03906	P22 coat protein-protein 5 domain protein	NA
UHGV-0205795_6	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0205795_7	Structural annotation	PF07100, COG4288	NA	NA
UHGV-0205795_9	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0205795_9	eggNOG-mapper	1232449.BAHV02000016_gene1816	NA	NA
UHGV-0205795_9	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0205795_11	UniRef90	UniRef90_UPI001897C7B4	NA	NA
UHGV-0205795_11	eggNOG-mapper	428125.CLOLEP_00241	leucine binding	NA
UHGV-0205795_11	Pfam	PF07523	Bacterial Ig-like domain (group 3)	Big_3
UHGV-0205795_11	Pfam	PF19789	NA	DUF6273
UHGV-0205795_11	COG	COG0683	ABC-type branched-chain amino acid transport system, periplasmic component	NA
UHGV-0205795_11	Structural annotation	PF19789	NA	NA
UHGV-0205795_12	KOfam	K18454	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	NA
UHGV-0205795_12	PHROG	phrog_18593	NA	unknown function
UHGV-0205795_12	UniRef90	UniRef90_A0A2Y9CAD1	Carbohydrate binding domain-containing protein	NA
UHGV-0205795_12	eggNOG-mapper	552398.HMPREF0866_03095	NA	NA
UHGV-0205795_12	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0205795_13	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0205795_13	Structural annotation	TIGR02559	NA	NA
UHGV-0205795_14	UniRef90	UniRef90_A0A845QMU2	PBECR3 domain-containing protein	NA
UHGV-0205795_14	eggNOG-mapper	1408437.JNJN01000060_gene452	heme binding	NA
UHGV-0205795_14	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0205795_14	Structural annotation	PF18857, PF18798	NA	NA
UHGV-0205795_15	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0205795_15	PHROG	phrog_894	endolysin	lysis
UHGV-0205795_15	UniRef90	UniRef90_A0A315TGS1	Peptidase M15-like protein	NA
UHGV-0205795_15	eggNOG-mapper	390235.PputW619_1627	peptidase M15A	NA
UHGV-0205795_15	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0205795_15	COG	COG3108	NA	NA
UHGV-0205795_15	Structural annotation	PF08291, COG3108	NA	NA
UHGV-0205795_16	PHROG	phrog_4105	NA	unknown function
UHGV-0205795_18	PHROG	phrog_6918	holin	lysis
UHGV-0205795_18	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0205795_18	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0205795_19	UniRef90	UniRef90_A0A843HPX3	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0205795_19	eggNOG-mapper	1235790.C805_00057	NA	NA
UHGV-0205795_19	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-0205795_20	PHROG	phrog_21718	NA	unknown function
UHGV-0205795_20	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0205795_22	PHROG	phrog_16490	NA	unknown function
UHGV-0205795_22	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0205795_23	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0205795_25	KOfam	K14059	int; integrase	NA
UHGV-0205795_25	PHROG	phrog_1	integrase	integration and excision
UHGV-0205795_25	UniRef90	UniRef90_A0A845QLR8	Tyr recombinase domain-containing protein	NA
UHGV-0205795_25	eggNOG-mapper	936375.HMPREF1152_1040	Phage integrase family	NA
UHGV-0205795_25	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0205795_25	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0205795_25	Structural annotation	PF00589, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0205795_26	KOfam	K06882	NA	NA
UHGV-0205795_26	eggNOG-mapper	1235802.C823_02972	competence protein COMEC	NA
UHGV-0205795_26	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-0205795_27	PHROG	phrog_20936	NA	unknown function
UHGV-0205795_27	UniRef90	UniRef90_R5BGI4	Peptidase_M78 domain-containing protein	NA
UHGV-0205795_27	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0205795_27	Structural annotation	PF06114	NA	NA
UHGV-0205795_28	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0205795_28	UniRef90	UniRef90_R7N2W9	DNA-binding helix-turn-helix protein	NA
UHGV-0205795_28	eggNOG-mapper	411462.DORLON_00819	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0205795_28	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0205795_28	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0205795_30	KOfam	K19449	sinR; XRE family transcriptional regulator, master regulator for biofilm formation	NA
UHGV-0205795_30	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0205795_30	UniRef90	UniRef90_UPI00164715D2	helix-turn-helix transcriptional regulator	NA
UHGV-0205795_30	eggNOG-mapper	445335.CBN_1315	Transcriptional regulator	NA
UHGV-0205795_30	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0205795_30	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0205795_30	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0205795_31	Structural annotation	NF040990	NA	NA
UHGV-0205795_33	PHROG	phrog_22529	NA	unknown function
UHGV-0205795_33	UniRef90	UniRef90_R6EKT9	3D domain-containing protein	NA
UHGV-0205795_33	eggNOG-mapper	1410622.JNKY01000010_gene1282	3D domain	NA
UHGV-0205795_33	Pfam	PF06725	3D domain	3D
UHGV-0205795_33	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0205795_33	Structural annotation	PF06725, MF_02071, NF040677, COG3584	NA	NA
UHGV-0205795_34	PHROG	phrog_2113	NA	unknown function
UHGV-0205795_36	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0205795_36	eggNOG-mapper	742767.HMPREF9456_02397	NA	NA
UHGV-0205795_36	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0205795_37	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0205795_37	UniRef90	UniRef90_UPI001CF8591D	YqaJ viral recombinase family protein	NA
UHGV-0205795_37	eggNOG-mapper	1122146.AUHP01000010_gene1042	YqaJ viral recombinase family	NA
UHGV-0205795_37	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0205795_37	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0205795_37	Structural annotation	PF10926, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0205795_38	PHROG	phrog_1389	NA	unknown function
UHGV-0205795_38	eggNOG-mapper	883156.HMPREF9282_01223	NA	NA
UHGV-0205795_38	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0205795_39	PHROG	phrog_7566	NA	unknown function
UHGV-0205795_39	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0205795_40	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0205795_40	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0205795_40	UniRef90	UniRef90_R6E0A2	Single-stranded DNA-binding protein	NA
UHGV-0205795_40	eggNOG-mapper	888727.HMPREF9092_0557	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0205795_40	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0205795_40	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0205795_40	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0205795_40	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0205795_40	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0205795_41	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0205795_41	UniRef90	UniRef90_R6DSN2	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0205795_41	eggNOG-mapper	1120985.AUMI01000019_gene2247	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0205795_41	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0205795_41	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0205795_42	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0205795_42	UniRef90	UniRef90_A0A2P1JTY8	DNA replication protein	NA
UHGV-0205795_42	eggNOG-mapper	458233.MCCL_0913	Replication initiation and membrane attachment	NA
UHGV-0205795_42	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0205795_42	Structural annotation	PF01978, NF033788, COG1846	NA	NA
UHGV-0205795_43	PHROG	phrog_9804	NA	unknown function
UHGV-0205795_43	UniRef90	UniRef90_A0A174S716	Inhibitor_G39P domain-containing protein	NA
UHGV-0205795_43	eggNOG-mapper	585394.RHOM_14005	Loader and inhibitor of phage G40P	NA
UHGV-0205795_43	AcrCatalog	cluster_137185	NA	NA
UHGV-0205795_43	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0205795_43	Structural annotation	PF11417	NA	NA
UHGV-0205795_44	eggNOG-mapper	428127.EUBDOL_01513	NA	NA
UHGV-0205795_45	eggNOG-mapper	428127.EUBDOL_01513	NA	NA
UHGV-0205795_45	AcrCatalog	cluster_47493	NA	NA
UHGV-0205795_48	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0205795_48	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0205795_48	UniRef90	UniRef90_UPI0019CFB3D8	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0205795_48	eggNOG-mapper	679201.HMPREF9334_00370	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0205795_48	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0205795_48	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0205795_48	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0205795_48	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0205795_49	Structural annotation	PF09889, MF_00649	NA	NA
UHGV-0205795_51	PHROG	phrog_22292	NA	unknown function
UHGV-0205795_52	PHROG	phrog_7711	NA	unknown function
UHGV-0205795_52	UniRef90	UniRef90_UPI001C38CAD2	Lar family restriction alleviation protein	NA
UHGV-0205795_52	eggNOG-mapper	1226322.HMPREF1545_00031	NA	NA
UHGV-0205795_53	PHROG	phrog_9151	HicB-like antitoxin	moron, auxiliary metabolic gene and host takeover
UHGV-0205795_53	UniRef90	UniRef90_A0A841GM78	Putative HicB family RNase H-like nuclease	NA
UHGV-0205795_53	eggNOG-mapper	402777.KB235898_gene5147	HicB family	NA
UHGV-0205795_53	COG	COG4226	Predicted nuclease of the RNAse H fold, HicB family	NA
UHGV-0205795_53	Structural annotation	PF21748, COG4226	NA	NA
UHGV-0205795_57	PHROG	phrog_10714	NA	unknown function
UHGV-0205795_59	PHROG	phrog_1485	NA	unknown function
UHGV-0205795_59	UniRef90	UniRef90_A0A3S8RPB6	NA	NA
UHGV-0205795_59	eggNOG-mapper	1444310.JANV01000096_gene3245	NA	NA
UHGV-0205795_59	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-0205795_59	Structural annotation	PF07659	NA	NA
UHGV-0205795_60	PHROG	phrog_25385	NA	unknown function
UHGV-0205795_60	eggNOG-mapper	411468.CLOSCI_00565	NA	NA
UHGV-0205795_63	Structural annotation	PF18066	NA	NA
UHGV-0205795_64	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0205795_66	Structural annotation	COG1724	NA	NA