UHGV-0206835

Genome information

Genome length 40,412 bps

CDS count 62

Completeness 90.84% (high-quality)

geNomad score 0.9801

Prediction confidence Confident

Genome information
Genome ID	UHGV-0206835
vOTU ID	vOTU-067694
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN10080890_a1_ct29904_vs1@linear@Myoviridae__sp._ctuSc1
BioSample	SAMN10080890
Country	Cameroon
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.84% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9801
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.22
Jumbo phage	No

Genome content
Genome length	40,412 bps
GC content	50.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	87.15%
Average CDS length	570.77 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0206835_1	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0206835_1	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0206835_1	UniRef90	UniRef90_UPI001EDF3789	single-stranded DNA-binding protein	NA
UHGV-0206835_1	eggNOG-mapper	445972.ANACOL_00151	Single-stranded DNA-binding protein	NA
UHGV-0206835_1	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0206835_1	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0206835_1	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0206835_1	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0206835_1	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0206835_2	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0206835_2	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0206835_2	UniRef90	UniRef90_U2SBP2	Recombination and repair protein RecT	NA
UHGV-0206835_2	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0206835_2	Pfam	PF03837	RecT family	RecT
UHGV-0206835_2	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0206835_2	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0206835_2	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0206835_3	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0206835_3	UniRef90	UniRef90_A0A3D3XZF3	YqaJ domain-containing protein	NA
UHGV-0206835_3	eggNOG-mapper	1121344.JHZO01000003_gene985	YqaJ viral recombinase family	NA
UHGV-0206835_3	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0206835_3	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0206835_3	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0206835_3	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0206835_5	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0206835_5	UniRef90	UniRef90_A0A354MSK6	Spo0A_C domain-containing protein	NA
UHGV-0206835_5	eggNOG-mapper	718252.FP2_08180	May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process	NA
UHGV-0206835_5	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0206835_5	COG	COG0745	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	NA
UHGV-0206835_5	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-0206835_7	Structural annotation	PF08962, PF07653, COG2388	NA	NA
UHGV-0206835_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0206835_9	UniRef90	UniRef90_A0A8D9UHB1	Repressor protein CI	NA
UHGV-0206835_9	eggNOG-mapper	1226322.HMPREF1545_00148	Transcriptional	NA
UHGV-0206835_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0206835_9	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0206835_9	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0206835_10	PHROG	phrog_5783	NA	unknown function
UHGV-0206835_10	UniRef90	UniRef90_G9YPL4	NYN domain-containing protein	NA
UHGV-0206835_10	eggNOG-mapper	638301.HMPREF0444_1540	NYN domain	NA
UHGV-0206835_10	Pfam	PF01936	NYN domain	NYN
UHGV-0206835_10	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0206835_10	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-0206835_11	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0206835_12	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0206835_12	PHROG	phrog_95	integrase	integration and excision
UHGV-0206835_12	UniRef90	UniRef90_UPI00164E9A6A	recombinase family protein	NA
UHGV-0206835_12	eggNOG-mapper	718252.FP2_29980	NA	NA
UHGV-0206835_12	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0206835_12	Pfam	PF07508	Recombinase	Recombinase
UHGV-0206835_12	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0206835_12	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0206835_12	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0206835_16	PHROG	phrog_10091	holin	lysis
UHGV-0206835_16	UniRef90	UniRef90_A0A1Y4RHF4	Phage holin	NA
UHGV-0206835_16	eggNOG-mapper	97139.C824_05950	Bacteriophage holin	NA
UHGV-0206835_16	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0206835_16	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0206835_16	COG	COG5546	NA	NA
UHGV-0206835_16	Structural annotation	COG5546	NA	NA
UHGV-0206835_17	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0206835_17	UniRef90	UniRef90_A0A416ZL61	NA	NA
UHGV-0206835_17	eggNOG-mapper	411473.RUMCAL_00360	NA	NA
UHGV-0206835_17	Pfam	PF14359	NA	DUF4406
UHGV-0206835_17	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0206835_18	PHROG	phrog_937	hemolysin	other
UHGV-0206835_18	eggNOG-mapper	445972.ANACOL_01873	NA	NA
UHGV-0206835_19	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0206835_19	PHROG	phrog_894	endolysin	lysis
UHGV-0206835_19	UniRef90	UniRef90_UPI001C12323B	D-Ala-D-Ala carboxypeptidase family metallohydrolase	NA
UHGV-0206835_19	eggNOG-mapper	931626.Awo_c26840	Peptidase M15	NA
UHGV-0206835_19	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0206835_19	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0206835_19	COG	COG3108	NA	NA
UHGV-0206835_19	Structural annotation	PF08291, PF01471, TIGR02869, COG3108	NA	NA
UHGV-0206835_20	PHROG	phrog_5240	tail fiber protein	tail
UHGV-0206835_20	eggNOG-mapper	1231336.L248_1039	GDSL-like Lipase/Acylhydrolase family	NA
UHGV-0206835_20	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0206835_25	Structural annotation	PF14686, PF21253, NF040788, COG2512	NA	NA
UHGV-0206835_26	PHROG	phrog_38044	NA	unknown function
UHGV-0206835_26	eggNOG-mapper	1445858.A0A060AN56_9CAUD	peptidoglycan catabolic process	NA
UHGV-0206835_29	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0206835_29	Structural annotation	NF041249, COG4379	NA	NA
UHGV-0206835_30	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0206835_30	Structural annotation	PF16466, TIGR01603, COG3500	NA	NA
UHGV-0206835_31	PHROG	phrog_1194	NA	unknown function
UHGV-0206835_31	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0206835_32	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0206835_32	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0206835_32	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0206835_33	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0206835_34	UniRef90	UniRef90_A0A496N7D3	NA	NA
UHGV-0206835_34	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0206835_34	Pfam	PF16478	NA	DUF5055
UHGV-0206835_34	Structural annotation	PF16478	NA	NA
UHGV-0206835_35	PHROG	phrog_158	major tail protein	tail
UHGV-0206835_35	UniRef90	UniRef90_A0A1C6L0H9	Phage tail protein	NA
UHGV-0206835_35	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0206835_35	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0206835_36	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0206835_37	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0206835_38	eggNOG-mapper	1121866.AUGK01000003_gene1432	NA	NA
UHGV-0206835_39	UniRef90	UniRef90_UPI00164E20D5	phage head-tail connector protein	NA
UHGV-0206835_39	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0206835_39	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0206835_39	Structural annotation	TIGR01560	NA	NA
UHGV-0206835_40	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0206835_40	UniRef90	UniRef90_UPI00189F9709	NA	NA
UHGV-0206835_40	eggNOG-mapper	665956.HMPREF1032_03619	NA	NA
UHGV-0206835_40	Pfam	PF17236	NA	DUF5309
UHGV-0206835_40	Structural annotation	PF17236, MF_04119, NF041162, COG4653	NA	NA
UHGV-0206835_42	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0206835_42	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0206835_42	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0206835_43	PHROG	phrog_64	portal protein	head and packaging
UHGV-0206835_43	UniRef90	UniRef90_UPI001C02F349	phage portal protein	NA
UHGV-0206835_43	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0206835_43	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0206835_43	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0206835_45	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0206835_45	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0206835_45	UniRef90	UniRef90_UPI001C0EF04B	phage antirepressor KilAC domain-containing protein	NA
UHGV-0206835_45	eggNOG-mapper	573061.Clocel_3580	Phage antirepressor protein	NA
UHGV-0206835_45	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0206835_45	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0206835_45	COG	COG3617	Prophage antirepressor	NA
UHGV-0206835_45	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0206835_46	UniRef90	UniRef90_A0A845R620	CopG family transcriptional regulator	NA
UHGV-0206835_46	Structural annotation	PF01402, NF041793, COG4453	NA	NA
UHGV-0206835_47	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0206835_47	UniRef90	UniRef90_A0A810QA10	Terminase	NA
UHGV-0206835_47	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0206835_47	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0206835_47	COG	COG5410	NA	NA
UHGV-0206835_47	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0206835_48	PHROG	phrog_1233	NA	unknown function
UHGV-0206835_48	eggNOG-mapper	1232443.BAIA02000078_gene33	NA	NA
UHGV-0206835_49	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0206835_49	Structural annotation	PF13240	NA	NA
UHGV-0206835_50	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0206835_50	PHROG	phrog_95	integrase	integration and excision
UHGV-0206835_50	UniRef90	UniRef90_A0A3D4G6V8	Resolvase	NA
UHGV-0206835_50	eggNOG-mapper	697329.Rumal_3466	resolvase	NA
UHGV-0206835_50	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0206835_50	Pfam	PF07508	Recombinase	Recombinase
UHGV-0206835_50	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0206835_50	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0206835_54	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0206835_54	UniRef90	UniRef90_UPI001C012D23	DNA-packaging protein	NA
UHGV-0206835_54	eggNOG-mapper	1280663.ATVR01000009_gene2143	NA	NA
UHGV-0206835_54	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0206835_54	Structural annotation	PF16677	NA	NA
UHGV-0206835_58	Structural annotation	PF10013, NF001638, COG4338	NA	NA
UHGV-0206835_61	PHROG	phrog_924	NA	unknown function
UHGV-0206835_61	UniRef90	UniRef90_UPI0010831DF2	NA	NA
UHGV-0206835_61	Pfam	PF04448	NA	DUF551
UHGV-0206835_61	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0206835_61	Structural annotation	PF04448, NF041588	NA	NA