UHGV-0207288

Genome information

vOTU vOTU-019329

Genome length 21,413 bps

CDS count 28

Completeness 50.32% (medium-quality)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-0207288
vOTU ID	vOTU-019329
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN10290198_a1_ct10670_vs1@linear@Siphoviridae__sp._ctI5p1
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.32% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.41
Jumbo phage	No

Genome content
Genome length	21,413 bps
GC content	50.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	28
CDS density	95.30%
Average CDS length	729.96 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0207288_5	PHROG	phrog_1558	NA	unknown function
UHGV-0207288_5	UniRef90	UniRef90_UPI001D093592	helix-turn-helix domain-containing protein	NA
UHGV-0207288_5	eggNOG-mapper	1163671.JAGI01000002_gene3057	NA	NA
UHGV-0207288_5	Structural annotation	PF13613, MF_00245, NF008895, COG2739	NA	NA
UHGV-0207288_6	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0207288_6	UniRef90	UniRef90_R0CLX0	Phage terminase small subunit	NA
UHGV-0207288_6	eggNOG-mapper	411902.CLOBOL_00140	DNA packaging	NA
UHGV-0207288_6	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0207288_6	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0207288_6	COG	COG5484	NA	NA
UHGV-0207288_6	Structural annotation	NF040601, COG5484	NA	NA
UHGV-0207288_7	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0207288_7	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0207288_7	UniRef90	UniRef90_A0A413B195	PBSX family phage terminase large subunit	NA
UHGV-0207288_7	eggNOG-mapper	411902.CLOBOL_00139	Phage terminase, large subunit, PBSX family	NA
UHGV-0207288_7	COG	COG1783	Phage terminase large subunit	NA
UHGV-0207288_7	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0207288_8	PHROG	phrog_533	portal protein	head and packaging
UHGV-0207288_8	UniRef90	UniRef90_UPI0011062C56	phage portal protein	NA
UHGV-0207288_8	eggNOG-mapper	411902.CLOBOL_00138	NA	NA
UHGV-0207288_8	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0207288_8	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0207288_9	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0207288_9	UniRef90	UniRef90_A0A174E7C5	Minor capsid 2 protein	NA
UHGV-0207288_9	eggNOG-mapper	411902.CLOBOL_00137	NA	NA
UHGV-0207288_9	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0207288_9	COG	COG2369	NA	NA
UHGV-0207288_9	Structural annotation	PF06152, PF04002	NA	NA
UHGV-0207288_10	PHROG	phrog_30750	NA	unknown function
UHGV-0207288_11	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0207288_11	UniRef90	UniRef90_C0CSR8	Phage minor structural protein GP20	NA
UHGV-0207288_11	eggNOG-mapper	411902.CLOBOL_00135	COG NOG36366 non supervised orthologous group	NA
UHGV-0207288_11	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0207288_11	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0207288_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-0207288_12	UniRef90	UniRef90_UPI000E438149	phage major capsid protein	NA
UHGV-0207288_12	eggNOG-mapper	411902.CLOBOL_00134	Phage capsid family	NA
UHGV-0207288_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0207288_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0207288_12	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0207288_12	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0207288_13	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0207288_13	eggNOG-mapper	411902.CLOBOL_00133	NA	NA
UHGV-0207288_14	PHROG	phrog_3366	NA	unknown function
UHGV-0207288_14	eggNOG-mapper	411902.CLOBOL_00132	NA	NA
UHGV-0207288_14	Pfam	PF20536	NA	DUF6751
UHGV-0207288_14	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0207288_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0207288_15	UniRef90	UniRef90_UPI00189CE0C6	minor capsid protein	NA
UHGV-0207288_15	eggNOG-mapper	411902.CLOBOL_00131	Minor capsid protein	NA
UHGV-0207288_15	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0207288_15	Structural annotation	PF11114	NA	NA
UHGV-0207288_16	PHROG	phrog_3266	tail completion	connector
UHGV-0207288_16	eggNOG-mapper	411902.CLOBOL_00130	NA	NA
UHGV-0207288_16	Structural annotation	PF20765	NA	NA
UHGV-0207288_17	PHROG	phrog_3099	NA	unknown function
UHGV-0207288_17	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0207288_17	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0207288_18	PHROG	phrog_11299	NA	unknown function
UHGV-0207288_18	eggNOG-mapper	411902.CLOBOL_00128	NA	NA
UHGV-0207288_19	PHROG	phrog_706	NA	unknown function
UHGV-0207288_19	UniRef90	UniRef90_A0A0F0CE18	Bacteriophage Gp15 protein	NA
UHGV-0207288_19	eggNOG-mapper	411902.CLOBOL_00127	NA	NA
UHGV-0207288_19	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0207288_19	Structural annotation	PF06854	NA	NA
UHGV-0207288_20	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0207288_20	eggNOG-mapper	411902.CLOBOL_00126	NA	NA
UHGV-0207288_20	COG	COG5283	Phage-related tail protein	NA
UHGV-0207288_21	PHROG	phrog_1194	NA	unknown function
UHGV-0207288_21	eggNOG-mapper	411902.CLOBOL_00125	NA	NA
UHGV-0207288_21	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0207288_22	PHROG	phrog_13879	NA	unknown function
UHGV-0207288_22	eggNOG-mapper	411902.CLOBOL_00124	NA	NA
UHGV-0207288_22	Structural annotation	PF14594, PF21114, MF_00813, NF033848, TIGR02961, COG4379, COG4266	NA	NA
UHGV-0207288_23	PHROG	phrog_18725	NA	unknown function
UHGV-0207288_23	eggNOG-mapper	411902.CLOBOL_00123	NA	NA
UHGV-0207288_24	eggNOG-mapper	411902.CLOBOL_00122	NA	NA
UHGV-0207288_25	UniRef90	UniRef90_UPI000C7AC03D	fibronectin type III domain-containing protein	NA
UHGV-0207288_25	eggNOG-mapper	742733.HMPREF9469_00967	NA	NA
UHGV-0207288_25	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0207288_25	Structural annotation	PF21722, PF20942, TIGR04488, COG3401	NA	NA
UHGV-0207288_26	eggNOG-mapper	742733.HMPREF9469_00968	NA	NA
UHGV-0207288_28	eggNOG-mapper	411902.CLOBOL_00117	Bacteriophage holin family	NA
UHGV-0207288_28	COG	COG4824	Phage-related holin (Lysis protein)	NA