UHGV-0207565

Genome information

vOTU vOTU-020240

Genome length 52,626 bps

CDS count 64

Completeness 65.99% (medium-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-0207565
vOTU ID	vOTU-020240
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN10080878_a1_ct17032_vs1@linear@Siphoviridae__sp._ctbco1
BioSample	SAMN10080878
Country	Cameroon
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.99% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.33
Jumbo phage	No

Genome content
Genome length	52,626 bps
GC content	35.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	92.86%
Average CDS length	765.61 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0207565_1	UniRef90	UniRef90_UPI0002F68456	KilA-N domain-containing protein	NA
UHGV-0207565_1	eggNOG-mapper	926551.KB900715_gene2211	NA	NA
UHGV-0207565_1	Structural annotation	PF04383, NF033622	NA	NA
UHGV-0207565_3	PHROG	phrog_11233	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0207565_3	COG	COG0735	Fe2+ or Zn2+ uptake regulation protein Fur/Zur	NA
UHGV-0207565_3	Structural annotation	PF07106, TIGR04176, COG3355	NA	NA
UHGV-0207565_4	PHROG	phrog_129	transcriptional regulator	transcription regulation
UHGV-0207565_4	UniRef90	UniRef90_A0A6I1BA75	KilA-N domain-containing protein	NA
UHGV-0207565_4	eggNOG-mapper	585502.HMPREF0645_2654	KilA-N domain	NA
UHGV-0207565_4	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-0207565_4	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0207565_4	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0207565_5	KOfam	K07496	K07496; putative transposase	NA
UHGV-0207565_5	PHROG	phrog_506	transposase	integration and excision
UHGV-0207565_5	UniRef90	UniRef90_A0A368PDW8	Transposase	NA
UHGV-0207565_5	eggNOG-mapper	1094980.Mpsy_2377	Probable transposase	NA
UHGV-0207565_5	PADLOC	Type_V_V_U4	Cas12	CRISPR-CAS
UHGV-0207565_5	Pfam	PF12323	Helix-turn-helix domain	HTH_OrfB_IS605
UHGV-0207565_5	Pfam	PF01385	Probable transposase	OrfB_IS605
UHGV-0207565_5	Pfam	PF07282	Putative transposase DNA-binding domain	OrfB_Zn_ribbon
UHGV-0207565_5	NCBIFam	NF038281.1	IS200/IS605 family element RNA-guided endonuclease TnpB	NA
UHGV-0207565_5	COG	COG0675	Transposase	NA
UHGV-0207565_5	Structural annotation	PF07282, PF01385, NF038281, COG0675	NA	NA
UHGV-0207565_6	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0207565_6	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0207565_6	UniRef90	UniRef90_A0A3R6Q1Q5	Phage antirepressor protein	NA
UHGV-0207565_6	eggNOG-mapper	293826.Amet_0841	Phage antirepressor protein	NA
UHGV-0207565_6	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0207565_6	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0207565_6	COG	COG3617	Prophage antirepressor	NA
UHGV-0207565_6	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0207565_14	PHROG	phrog_38044	NA	unknown function
UHGV-0207565_14	eggNOG-mapper	272559.BF9343_2203	NA	NA
UHGV-0207565_14	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0207565_16	PHROG	phrog_6486	NA	unknown function
UHGV-0207565_16	UniRef90	UniRef90_UPI001F4085BF	antA/AntB antirepressor family protein	NA
UHGV-0207565_16	eggNOG-mapper	411901.BACCAC_01209	BRO family, N-terminal domain	NA
UHGV-0207565_16	COG	COG3617	Prophage antirepressor	NA
UHGV-0207565_16	Structural annotation	PF08346, COG3561	NA	NA
UHGV-0207565_20	PHROG	phrog_64	portal protein	head and packaging
UHGV-0207565_20	UniRef90	UniRef90_A0A5P0X070	Phage portal protein	NA
UHGV-0207565_20	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0207565_20	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0207565_22	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0207565_22	UniRef90	UniRef90_A0A415SRG6	DOD-type homing endonuclease domain-containing protein	NA
UHGV-0207565_22	eggNOG-mapper	1147137.I1TJZ3_9CAUD	intein-mediated protein splicing	NA
UHGV-0207565_22	Pfam	PF14528	LAGLIDADG-like domain	LAGLIDADG_3
UHGV-0207565_22	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0207565_22	Structural annotation	PF05203, PF04466, PF20441, MF_04145, MF_01420, NF005852, TIGR01547, COG1372, COG5323	NA	NA
UHGV-0207565_24	Structural annotation	PF21430	NA	NA
UHGV-0207565_25	UniRef90	UniRef90_UPI001C381AC4	major capsid protein	NA
UHGV-0207565_25	Structural annotation	PF03864, MF_04133, TIGR04387, COG4834	NA	NA
UHGV-0207565_27	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0207565_29	Structural annotation	PF05561, NF040576, COG3167	NA	NA
UHGV-0207565_30	PHROG	phrog_88	major tail protein	tail
UHGV-0207565_30	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0207565_31	Structural annotation	PF06894, TIGR01674	NA	NA
UHGV-0207565_33	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0207565_33	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0207565_33	UniRef90	UniRef90_A0A3R5YC63	TMP_3 domain-containing protein	NA
UHGV-0207565_33	eggNOG-mapper	742727.HMPREF9447_04839	tape measure	NA
UHGV-0207565_33	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0207565_33	COG	COG1511	NA	NA
UHGV-0207565_33	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0207565_35	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0207565_35	UniRef90	UniRef90_UPI000A4C4D56	Rha family transcriptional regulator	NA
UHGV-0207565_35	eggNOG-mapper	1122971.BAME01000143_gene6488	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0207565_35	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0207565_35	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0207565_35	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0207565_35	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0207565_35	Structural annotation	PF09669, PF03374, TIGR02681, COG3645, COG3646	NA	NA
UHGV-0207565_45	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0207565_45	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0207565_45	UniRef90	UniRef90_UPI000E54903C	phage regulatory protein/antirepressor Ant	NA
UHGV-0207565_45	eggNOG-mapper	1105171.H2A0H2_9CAUD	DNA binding	NA
UHGV-0207565_45	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0207565_45	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0207565_45	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0207565_45	Structural annotation	PF09669, PF03374, TIGR02681, COG3646	NA	NA
UHGV-0207565_46	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0207565_46	PHROG	phrog_894	endolysin	lysis
UHGV-0207565_46	UniRef90	UniRef90_A0A7D7IT10	Glutamate synthase [NADPH] large chain	NA
UHGV-0207565_46	eggNOG-mapper	1105171.H2A0C2_9CAUD	zinc D-Ala-D-Ala carboxypeptidase activity	NA
UHGV-0207565_46	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0207565_46	Structural annotation	PF08291, COG3108	NA	NA
UHGV-0207565_49	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0207565_49	UniRef90	UniRef90_UPI00077A6DBE	AP2 domain-containing protein	NA
UHGV-0207565_49	eggNOG-mapper	1505225.A0A068CBG2_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0207565_49	AcrCatalog	cluster_5564	NA	NA
UHGV-0207565_49	Structural annotation	PF17375	NA	NA
UHGV-0207565_51	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0207565_51	UniRef90	UniRef90_A0A095Z6H0	MazG domain-containing protein	NA
UHGV-0207565_51	eggNOG-mapper	1236504.HMPREF2132_01780	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0207565_51	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0207565_51	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0207565_51	Structural annotation	TIGR03188, COG1694	NA	NA
UHGV-0207565_52	UniRef90	UniRef90_UPI001C6FD0F0	TIGR02757 family protein	NA
UHGV-0207565_52	eggNOG-mapper	742727.HMPREF9447_04881	NA	NA
UHGV-0207565_52	Pfam	PF09674	NA	DUF2400
UHGV-0207565_52	NCBIFam	TIGR02757.1	TIGR02757 family protein	NA
UHGV-0207565_52	COG	COG0177	Endonuclease III	NA
UHGV-0207565_52	Structural annotation	PF09674, PF05974, TIGR02757, COG3685	NA	NA
UHGV-0207565_53	Structural annotation	PF08512	NA	NA
UHGV-0207565_55	PHROG	phrog_129	transcriptional regulator	transcription regulation
UHGV-0207565_55	UniRef90	UniRef90_UPI0002F68456	KilA-N domain-containing protein	NA
UHGV-0207565_55	eggNOG-mapper	1236504.HMPREF2132_11140	KilA-N domain	NA
UHGV-0207565_55	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-0207565_55	Structural annotation	PF04383, NF033622	NA	NA
UHGV-0207565_56	Structural annotation	PF02075, MF_00034, TIGR00228, COG0817	NA	NA
UHGV-0207565_58	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0207565_58	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0207565_58	UniRef90	UniRef90_A0A374AEZ9	MBL fold metallo-hydrolase	NA
UHGV-0207565_58	eggNOG-mapper	445970.ALIPUT_02692	NA	NA
UHGV-0207565_58	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0207565_58	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0207565_58	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0207565_59	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0207565_59	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0207565_59	UniRef90	UniRef90_UPI00111E1F6D	recombinase RecT	NA
UHGV-0207565_59	eggNOG-mapper	1327971.R9ZWF0_9CAUD	DNA metabolic process	NA
UHGV-0207565_59	Pfam	PF03837	RecT family	RecT
UHGV-0207565_59	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0207565_60	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0207565_60	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0207565_60	UniRef90	UniRef90_UPI001ABBDA11	phage antirepressor KilAC domain-containing protein	NA
UHGV-0207565_60	eggNOG-mapper	992406.RIA_0221	AntA/AntB antirepressor	NA
UHGV-0207565_60	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0207565_60	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0207565_60	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0207565_60	Structural annotation	PF03374, PF08346, TIGR02681, COG3561, COG3645	NA	NA
UHGV-0207565_61	eggNOG-mapper	1121100.JCM6294_521	NA	NA
UHGV-0207565_62	PHROG	phrog_19572	NA	unknown function
UHGV-0207565_62	UniRef90	UniRef90_UPI0002132106	NA	NA
UHGV-0207565_62	eggNOG-mapper	272559.BF9343_2737	COG NOG14445 non supervised orthologous group	NA
UHGV-0207565_62	Pfam	PF14902	NA	DUF4494
UHGV-0207565_62	Structural annotation	PF14902	NA	NA
UHGV-0207565_63	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0207565_63	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0207565_63	UniRef90	UniRef90_UPI001E48A3AB	AAA family ATPase	NA
UHGV-0207565_63	eggNOG-mapper	1443122.Z958_05685	nuclear chromosome segregation	NA
UHGV-0207565_63	Pfam	PF13476	AAA domain	AAA_23
UHGV-0207565_63	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0207565_64	PHROG	phrog_20532	NA	unknown function
UHGV-0207565_64	eggNOG-mapper	1507.HMPREF0262_01166	NA	NA
UHGV-0207565_64	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck