UHGV-0207754

Genome information

Genome length 31,745 bps

CDS count 54

Completeness 94.17% (high-quality)

geNomad score 0.9768

Prediction confidence Confident

Genome information
Genome ID	UHGV-0207754
vOTU ID	vOTU-072450
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SRS097889_a1_ct35245_vs1@Myoviridae__sp._ctvQQ1
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.17% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9768
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.18
Jumbo phage	No

Genome content
Genome length	31,745 bps
GC content	44.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	90.48%
Average CDS length	536.78 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0207754_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0207754_1	PHROG	phrog_3088	amidase	lysis
UHGV-0207754_1	UniRef90	UniRef90_A0A412AXM4	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0207754_1	eggNOG-mapper	428125.CLOLEP_00171	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0207754_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0207754_1	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0207754_2	PHROG	phrog_7121	tail fiber protein	tail
UHGV-0207754_2	UniRef90	UniRef90_A7VT91	Peptidase S74 domain-containing protein	NA
UHGV-0207754_2	eggNOG-mapper	428125.CLOLEP_00172	COG COG5295 Autotransporter adhesin	NA
UHGV-0207754_2	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0207754_2	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0207754_2	Structural annotation	PF10651	NA	NA
UHGV-0207754_3	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0207754_3	UniRef90	UniRef90_A0A1C6H6B4	Phage-related protein	NA
UHGV-0207754_3	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0207754_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0207754_3	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0207754_3	COG	COG4926	Phage-related protein	NA
UHGV-0207754_3	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0207754_4	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0207754_4	UniRef90	UniRef90_A0A1C6H6D2	Phage-related protein	NA
UHGV-0207754_4	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0207754_4	COG	COG4722	Phage-related protein YomH	NA
UHGV-0207754_4	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0207754_5	PHROG	phrog_23464	NA	unknown function
UHGV-0207754_5	UniRef90	UniRef90_A0A1C6H5M9	Phage-related minor tail protein	NA
UHGV-0207754_5	eggNOG-mapper	1232452.BAIB02000007_gene1616	phage tail tape measure protein	NA
UHGV-0207754_5	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0207754_5	Structural annotation	PF20155, TIGR01760, COG5280	NA	NA
UHGV-0207754_6	PHROG	phrog_3033	NA	unknown function
UHGV-0207754_6	eggNOG-mapper	1280671.AUJH01000012_gene3142	NA	NA
UHGV-0207754_7	PHROG	phrog_709	NA	unknown function
UHGV-0207754_7	eggNOG-mapper	411471.SUBVAR_05858	NA	NA
UHGV-0207754_7	Structural annotation	PF11836	NA	NA
UHGV-0207754_8	PHROG	phrog_88	major tail protein	tail
UHGV-0207754_8	UniRef90	UniRef90_A0A1C6H6F0	Phage major tail protein, phi13 family	NA
UHGV-0207754_8	eggNOG-mapper	1226322.HMPREF1545_00121	phage major tail protein, phi13 family	NA
UHGV-0207754_8	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0207754_8	Structural annotation	PF06488, TIGR01603, COG3157	NA	NA
UHGV-0207754_9	PHROG	phrog_78	tail terminator	connector
UHGV-0207754_9	UniRef90	UniRef90_U2SBX3	HTH merR-type domain-containing protein	NA
UHGV-0207754_9	eggNOG-mapper	411471.SUBVAR_05856	NA	NA
UHGV-0207754_9	Structural annotation	PF20765	NA	NA
UHGV-0207754_10	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0207754_10	UniRef90	UniRef90_A0A8J6PH82	HK97 gp10 family phage protein	NA
UHGV-0207754_10	eggNOG-mapper	411471.SUBVAR_05855	NA	NA
UHGV-0207754_10	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0207754_10	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0207754_11	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0207754_11	UniRef90	UniRef90_A0A2V2GSS5	Phage head-tail adapter protein	NA
UHGV-0207754_11	eggNOG-mapper	411471.SUBVAR_05854	NA	NA
UHGV-0207754_11	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0207754_12	PHROG	phrog_2550	NA	unknown function
UHGV-0207754_12	UniRef90	UniRef90_R5V091	Phage related protein	NA
UHGV-0207754_12	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0207754_12	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0207754_13	PHROG	phrog_10	major head protein	head and packaging
UHGV-0207754_13	UniRef90	UniRef90_A0A1C6H720	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0207754_13	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-0207754_13	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0207754_13	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0207754_13	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0207754_13	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0207754_13	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0207754_14	KOfam	K06904	NA	NA
UHGV-0207754_14	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0207754_14	UniRef90	UniRef90_A0A1C6H687	Phage prohead protease, HK97 family	NA
UHGV-0207754_14	eggNOG-mapper	1226322.HMPREF1545_00115	Phage prohead protease, HK97 family	NA
UHGV-0207754_14	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0207754_14	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0207754_14	COG	COG3740	Phage head maturation protease	NA
UHGV-0207754_14	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0207754_15	PHROG	phrog_12	portal protein	head and packaging
UHGV-0207754_15	UniRef90	UniRef90_A0A1C6H763	Phage portal protein, HK97 family	NA
UHGV-0207754_15	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-0207754_15	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0207754_15	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0207754_15	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0207754_15	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0207754_16	PHROG	phrog_2699	terminase large subunit	head and packaging
UHGV-0207754_16	UniRef90	UniRef90_A0A0D8IV16	Terminase	NA
UHGV-0207754_16	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0207754_16	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0207754_16	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0207754_16	Structural annotation	PF20441, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0207754_17	PHROG	phrog_7168	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0207754_17	UniRef90	UniRef90_UPI000CDB1794	GIY-YIG nuclease family protein	NA
UHGV-0207754_17	eggNOG-mapper	1280692.AUJL01000004_gene859	GIY-YIG type nucleases (URI domain)	NA
UHGV-0207754_17	PADLOC	HEase_00030	homing endonuclease	RM
UHGV-0207754_17	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0207754_17	Pfam	PF04218	CENP-B N-terminal DNA-binding domain	CENP-B_N
UHGV-0207754_17	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-0207754_17	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-0207754_17	Structural annotation	PF19835, PF02796, PF06056, TIGR01453, COG3415	NA	NA
UHGV-0207754_18	PHROG	phrog_4914	terminase large subunit	head and packaging
UHGV-0207754_18	UniRef90	UniRef90_UPI000E391100	terminase large subunit	NA
UHGV-0207754_18	eggNOG-mapper	398512.JQKC01000009_gene448	Phage Terminase	NA
UHGV-0207754_18	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0207754_18	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0207754_18	Structural annotation	PF03354, MF_04146, COG4626	NA	NA
UHGV-0207754_19	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0207754_19	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-0207754_19	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0207754_19	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0207754_19	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0207754_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0207754_22	UniRef90	UniRef90_A0A4Z0XVP8	RNA polymerase sigma factor SigO	NA
UHGV-0207754_22	eggNOG-mapper	1408303.JNJJ01000084_gene2550	NA	NA
UHGV-0207754_22	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0207754_22	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0207754_24	eggNOG-mapper	445972.ANACOL_01837	NA	NA
UHGV-0207754_30	PHROG	phrog_22543	NA	unknown function
UHGV-0207754_32	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0207754_32	UniRef90	UniRef90_UPI0019177EBB	Lar family restriction alleviation protein	NA
UHGV-0207754_32	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0207754_32	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0207754_32	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0207754_33	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0207754_33	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0207754_33	UniRef90	UniRef90_A0A1C6HIB8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0207754_33	eggNOG-mapper	1304866.K413DRAFT_1208	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0207754_33	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0207754_33	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0207754_33	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0207754_33	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0207754_33	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0207754_36	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0207754_36	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0207754_36	UniRef90	UniRef90_R6P3P1	SF4 helicase domain-containing protein	NA
UHGV-0207754_36	eggNOG-mapper	476272.RUMHYD_02834	NA	NA
UHGV-0207754_36	Pfam	PF06745	KaiC	ATPase
UHGV-0207754_36	COG	COG0305	Replicative DNA helicase	NA
UHGV-0207754_36	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-0207754_37	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0207754_37	UniRef90	UniRef90_A0A1M5ZHR8	TF_AP-2 domain-containing protein	NA
UHGV-0207754_37	eggNOG-mapper	1348583.ATLH01000031_gene1927	DnaD domain protein	NA
UHGV-0207754_37	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0207754_37	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0207754_38	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0207754_38	UniRef90	UniRef90_R6N0P8	ERCC4 domain-containing protein	NA
UHGV-0207754_38	eggNOG-mapper	476272.RUMHYD_01740	ERCC4 domain	NA
UHGV-0207754_38	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0207754_38	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-0207754_38	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0207754_39	PHROG	phrog_18107	NA	unknown function
UHGV-0207754_39	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-0207754_39	Structural annotation	PF05037	NA	NA
UHGV-0207754_41	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0207754_41	UniRef90	UniRef90_A0A412AWF4	ATP-binding protein	NA
UHGV-0207754_41	eggNOG-mapper	1345695.CLSA_c30180	AAA domain	NA
UHGV-0207754_41	Pfam	PF13479	AAA domain	AAA_24
UHGV-0207754_41	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0207754_53	UniRef90	UniRef90_UPI0019D114BC	XRE family transcriptional regulator	NA
UHGV-0207754_53	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0207754_54	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0207754_54	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0207754_54	UniRef90	UniRef90_A0A412AWI8	HTH cro/C1-type domain-containing protein	NA
UHGV-0207754_54	eggNOG-mapper	1123263.AUKY01000107_gene746	Peptidase S24-like	NA
UHGV-0207754_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0207754_54	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0207754_54	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0207754_54	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA