UHGV-0208377

Genome information

Genome length 33,821 bps

CDS count 54

Completeness 99.11% (high-quality)

geNomad score 0.9762

Prediction confidence Confident

Genome information
Genome ID	UHGV-0208377
vOTU ID	vOTU-080207
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN11252284_a1_ct103205_vs1@Siphoviridae__sp._ctutE1
BioSample	SAMN11252284
Country	Ethiopia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.11% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9762
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.69
Jumbo phage	No

Genome content
Genome length	33,821 bps
GC content	60.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	90.62%
Average CDS length	570.61 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0208377_1	UniRef90	UniRef90_A0A7M4CJJ4	Cadherin-like beta sandwich domain-containing protein	NA
UHGV-0208377_1	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0208377_1	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0208377_1	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0208377_2	PHROG	phrog_749	NA	unknown function
UHGV-0208377_2	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0208377_3	PHROG	phrog_19734	NA	unknown function
UHGV-0208377_3	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-0208377_3	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0208377_3	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0208377_4	eggNOG-mapper	908340.HMPREF9406_2574	NA	NA
UHGV-0208377_4	Structural annotation	PF05657	NA	NA
UHGV-0208377_5	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0208377_5	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-0208377_5	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0208377_5	Structural annotation	TIGR01725	NA	NA
UHGV-0208377_6	PHROG	phrog_88	major tail protein	tail
UHGV-0208377_6	UniRef90	UniRef90_G9YSC5	Phage major tail protein, phi13 family	NA
UHGV-0208377_6	COG	COG5492	NA	NA
UHGV-0208377_6	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0208377_9	PHROG	phrog_3981	tail length tape measure protein	tail
UHGV-0208377_9	UniRef90	UniRef90_A0A1E3BXP9	Phage tail protein	NA
UHGV-0208377_9	eggNOG-mapper	1216932.CM240_0625	tape measure	NA
UHGV-0208377_9	COG	COG5283	Phage-related tail protein	NA
UHGV-0208377_9	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-0208377_10	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0208377_10	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0208377_10	eggNOG-mapper	585198.HMPREF0574_0620	phage tail	NA
UHGV-0208377_10	COG	COG4722	Phage-related protein YomH	NA
UHGV-0208377_10	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0208377_11	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0208377_11	UniRef90	UniRef90_A0A316NPB5	Peptidase S74 domain-containing protein	NA
UHGV-0208377_11	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0208377_11	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0208377_11	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0208377_11	COG	COG4926	Phage-related protein	NA
UHGV-0208377_11	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0208377_12	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0208377_12	NCBIFam	TIGR02543.1	TIGR02543 family repeat protein	NA
UHGV-0208377_13	Structural annotation	PF21683	NA	NA
UHGV-0208377_14	PHROG	phrog_5302	tail protein	tail
UHGV-0208377_14	UniRef90	UniRef90_A0A345BPB9	Lectin	NA
UHGV-0208377_14	eggNOG-mapper	411468.CLOSCI_01504	NA	NA
UHGV-0208377_16	UniRef90	UniRef90_A0A417QX67	XkdX family protein	NA
UHGV-0208377_16	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0208377_17	PHROG	phrog_4105	NA	unknown function
UHGV-0208377_17	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0208377_17	eggNOG-mapper	411460.RUMTOR_01326	NA	NA
UHGV-0208377_18	PHROG	phrog_881	holin	lysis
UHGV-0208377_18	UniRef90	UniRef90_A0A8D9PDR9	Holin	NA
UHGV-0208377_18	eggNOG-mapper	476272.RUMHYD_01966	Putative phage holin Dp-1	NA
UHGV-0208377_18	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0208377_18	Structural annotation	PF16938	NA	NA
UHGV-0208377_19	PHROG	phrog_435	endolysin	lysis
UHGV-0208377_19	UniRef90	UniRef90_A0A8D9PDS4	Cell wall hydrolase/autolysin	NA
UHGV-0208377_19	eggNOG-mapper	1226322.HMPREF1545_01953	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0208377_19	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0208377_19	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0208377_19	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, TIGR03979, COG0860, COG3409	NA	NA
UHGV-0208377_24	PHROG	phrog_25567	NA	unknown function
UHGV-0208377_24	eggNOG-mapper	1235798.C817_04600	NA	NA
UHGV-0208377_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0208377_25	KOfam	K14059	int; integrase	NA
UHGV-0208377_25	PHROG	phrog_1	integrase	integration and excision
UHGV-0208377_25	UniRef90	UniRef90_UPI0013EF4EFD	site-specific integrase	NA
UHGV-0208377_25	eggNOG-mapper	1226322.HMPREF1545_00144	Belongs to the 'phage' integrase family	NA
UHGV-0208377_25	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0208377_25	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0208377_25	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0208377_26	eggNOG-mapper	1262449.CP6013_2082	NA	NA
UHGV-0208377_26	Structural annotation	PF11631, TIGR03066	NA	NA
UHGV-0208377_27	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0208377_27	UniRef90	UniRef90_UPI001C201C4D	helix-turn-helix transcriptional regulator	NA
UHGV-0208377_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0208377_27	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0208377_27	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0208377_29	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0208377_30	PHROG	phrog_3989	NA	unknown function
UHGV-0208377_30	UniRef90	UniRef90_UPI0003170388	BRCT domain-containing protein	NA
UHGV-0208377_30	eggNOG-mapper	755731.Clo1100_2167	twin BRCT domain	NA
UHGV-0208377_30	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0208377_30	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0208377_30	Structural annotation	PF00533, NF004844	NA	NA
UHGV-0208377_31	UniRef90	UniRef90_A0A1Y3ZTC9	HTH cro/C1-type domain-containing protein	NA
UHGV-0208377_31	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0208377_31	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0208377_31	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0208377_32	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0208377_32	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0208377_32	UniRef90	UniRef90_A0A7X3AR65	XRE family transcriptional regulator	NA
UHGV-0208377_32	eggNOG-mapper	1280680.AUJU01000017_gene3835	Helix-turn-helix domain	NA
UHGV-0208377_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0208377_32	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0208377_32	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0208377_33	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0208377_33	UniRef90	UniRef90_G9YL68	DNA-binding helix-turn-helix protein	NA
UHGV-0208377_33	eggNOG-mapper	742738.HMPREF9460_00847	Helix-turn-helix XRE-family like proteins	NA
UHGV-0208377_33	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0208377_33	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0208377_33	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0208377_35	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0208377_35	UniRef90	UniRef90_UPI001F3D92C2	helix-turn-helix domain-containing protein	NA
UHGV-0208377_35	eggNOG-mapper	742738.HMPREF9460_00851	Helix-turn-helix domain	NA
UHGV-0208377_35	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0208377_35	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0208377_35	Structural annotation	PF04182, NF040939, COG3355	NA	NA
UHGV-0208377_36	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0208377_36	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0208377_36	UniRef90	UniRef90_UPI00195856D7	AAA family ATPase	NA
UHGV-0208377_36	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0208377_36	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0208377_36	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0208377_36	COG	COG0305	Replicative DNA helicase	NA
UHGV-0208377_36	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0208377_37	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0208377_37	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0208377_37	UniRef90	UniRef90_UPI000318E277	ParA family protein	NA
UHGV-0208377_37	eggNOG-mapper	1007096.BAGW01000033_gene1614	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0208377_37	Pfam	PF13614	AAA domain	AAA_31
UHGV-0208377_37	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0208377_37	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0208377_38	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0208377_38	PHROG	phrog_27290	NA	unknown function
UHGV-0208377_38	UniRef90	UniRef90_UPI001C029D7C	ParB N-terminal domain-containing protein	NA
UHGV-0208377_38	eggNOG-mapper	1007096.BAGW01000033_gene1613	ParB-like nuclease domain	NA
UHGV-0208377_38	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0208377_38	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0208377_38	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0208377_47	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0208377_47	eggNOG-mapper	693746.OBV_19950	NA	NA
UHGV-0208377_47	Structural annotation	PF21578	NA	NA
UHGV-0208377_48	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0208377_48	UniRef90	UniRef90_G9YSB5	HNH domain-containing protein	NA
UHGV-0208377_48	eggNOG-mapper	86416.Clopa_0335	HNH nucleases	NA
UHGV-0208377_48	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0208377_48	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0208377_49	eggNOG-mapper	1125725.HMPREF1325_1312	N-4 methylation of cytosine	NA
UHGV-0208377_49	COG	COG0863	DNA modification methylase	NA
UHGV-0208377_50	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0208377_50	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0208377_50	UniRef90	UniRef90_A0A2N2CPV8	Methyltransferase (Fragment)	NA
UHGV-0208377_50	eggNOG-mapper	411154.GFO_2469	DNA methylase	NA
UHGV-0208377_50	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0208377_50	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0208377_50	COG	COG0863	DNA modification methylase	NA
UHGV-0208377_51	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0208377_51	UniRef90	UniRef90_UPI00195E8788	P27 family phage terminase small subunit	NA
UHGV-0208377_51	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0208377_51	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0208377_52	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0208377_52	UniRef90	UniRef90_A0A6I7GGF0	Terminase	NA
UHGV-0208377_52	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0208377_52	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0208377_52	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0208377_52	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0208377_52	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0208377_53	PHROG	phrog_12	portal protein	head and packaging
UHGV-0208377_53	UniRef90	UniRef90_G9YSB8	Phage portal protein, HK97 family	NA
UHGV-0208377_53	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0208377_53	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0208377_53	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0208377_53	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0208377_53	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA