UHGV-0208392

Genome information

vOTU vOTU-020247

Genome length 16,127 bps

CDS count 19

Completeness 50.62% (medium-quality)

geNomad score 0.9726

Prediction confidence Confident

Genome information
Genome ID	UHGV-0208392
vOTU ID	vOTU-020247
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SRS053587_a1_ct40357_vs1@Unclassified_virus__sp._ct4d31
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	50.62% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9726
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.83
Jumbo phage	No

Genome content
Genome length	16,127 bps
GC content	53.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	19
CDS density	94.69%
Average CDS length	804.32 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0208392_6	PHROG	phrog_2038	upper collar connector	connector
UHGV-0208392_6	UniRef90	UniRef90_A0A345BNP3	Upper collar protein	NA
UHGV-0208392_6	eggNOG-mapper	338473.A6XAD7_9CAUD	Phage Connector (GP10)	NA
UHGV-0208392_6	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0208392_6	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0208392_8	PHROG	phrog_2248	tail protein	tail
UHGV-0208392_8	eggNOG-mapper	338473.A6XAD6_9CAUD	NA	NA
UHGV-0208392_8	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0208392_9	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0208392_9	UniRef90	UniRef90_A0A3G3LXZ7	Major capsid protein	NA
UHGV-0208392_9	eggNOG-mapper	338473.A6XAD5_9CAUD	viral capsid	NA
UHGV-0208392_9	Structural annotation	PF21703, PF20942, MF_04119, TIGR04387, COG1659	NA	NA
UHGV-0208392_11	PHROG	phrog_2150	terminase	head and packaging
UHGV-0208392_11	UniRef90	UniRef90_A0A843GXZ6	Phage DNA encapsidation protein	NA
UHGV-0208392_11	eggNOG-mapper	10756.PKG16_BPPH2	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0208392_11	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0208392_11	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0208392_12	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0208392_12	Structural annotation	PF03175, MF_04055, NF004419, COG0417	NA	NA
UHGV-0208392_14	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0208392_14	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0208392_14	Structural annotation	PF17427	NA	NA
UHGV-0208392_15	Structural annotation	PF17548, MF_00273, NF001981, COG2157	NA	NA
UHGV-0208392_16	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0208392_16	PHROG	phrog_2338	endolysin	lysis
UHGV-0208392_16	UniRef90	UniRef90_UPI0009339BF5	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0208392_16	eggNOG-mapper	35760.BCHO_0821	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0208392_16	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0208392_16	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0208392_16	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0208392_16	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0208392_17	PHROG	phrog_4898	holin	lysis
UHGV-0208392_17	UniRef90	UniRef90_A0A843HL60	YvrJ family protein	NA