UHGV-0208441

Genome information

Genome length 30,513 bps

CDS count 57

Completeness 82.33% (medium-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-0208441
vOTU ID	vOTU-029608
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN09781764_a1_ct145992_vs1@Myoviridae__sp._ct2NV1
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.33% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10.69
Jumbo phage	No

Genome content
Genome length	30,513 bps
GC content	55.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	89.71%
Average CDS length	484.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0208441_14	PHROG	phrog_3392	NA	unknown function
UHGV-0208441_14	UniRef90	UniRef90_A8AT45	Gp21	NA
UHGV-0208441_14	eggNOG-mapper	1217710.F969_00044	NA	NA
UHGV-0208441_14	Pfam	PF04448	NA	DUF551
UHGV-0208441_14	Structural annotation	NF041588	NA	NA
UHGV-0208441_16	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0208441_16	UniRef90	UniRef90_A0A2Z4QA35	Putative radical SAM domain protein	NA
UHGV-0208441_16	eggNOG-mapper	97138.C820_02863	NA	NA
UHGV-0208441_16	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0208441_16	Structural annotation	MF_01864, NF010916, COG2516	NA	NA
UHGV-0208441_17	PHROG	phrog_10714	NA	unknown function
UHGV-0208441_18	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0208441_18	UniRef90	UniRef90_UPI000FF8D02D	AP2 domain-containing protein	NA
UHGV-0208441_18	eggNOG-mapper	478749.BRYFOR_06584	AP2 domain protein	NA
UHGV-0208441_18	Structural annotation	PF17375	NA	NA
UHGV-0208441_19	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0208441_19	UniRef90	UniRef90_UPI001F1BE169	Holliday junction endonuclease	NA
UHGV-0208441_19	eggNOG-mapper	329726.AM1_4255	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	NA
UHGV-0208441_19	COG	COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	NA
UHGV-0208441_19	Structural annotation	PF16921, MF_00034, NF000711, COG0817	NA	NA
UHGV-0208441_20	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0208441_20	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0208441_20	UniRef90	UniRef90_A0A316NA61	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0208441_20	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0208441_20	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0208441_20	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0208441_20	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0208441_20	Structural annotation	PF00145, TIGR00675	NA	NA
UHGV-0208441_22	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0208441_23	PHROG	phrog_2149	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0208441_23	UniRef90	UniRef90_A0A417QFV0	Transcriptional regulator	NA
UHGV-0208441_23	eggNOG-mapper	1095750.HMPREF9970_1674	NA	NA
UHGV-0208441_23	Structural annotation	PF10771, NF041413, COG0735	NA	NA
UHGV-0208441_24	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0208441_24	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0208441_24	UniRef90	UniRef90_A0A1W1YRF9	Single-stranded DNA-binding protein	NA
UHGV-0208441_24	eggNOG-mapper	693746.OBV_19910	Single-strand binding protein family	NA
UHGV-0208441_24	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0208441_24	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0208441_24	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0208441_24	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0208441_24	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0208441_25	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0208441_25	UniRef90	UniRef90_UPI000933A555	HNH endonuclease	NA
UHGV-0208441_25	eggNOG-mapper	1232449.BAHV02000016_gene1841	HNH nucleases	NA
UHGV-0208441_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0208441_26	UniRef90	UniRef90_A0A2Z4Q9W9	NinB	NA
UHGV-0208441_26	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0208441_26	Structural annotation	PF05772	NA	NA
UHGV-0208441_27	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0208441_27	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0208441_27	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0208441_27	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0208441_30	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0208441_30	UniRef90	UniRef90_A0A1C5N4H2	Siphovirus Gp157	NA
UHGV-0208441_30	eggNOG-mapper	1226322.HMPREF1545_04074	Siphovirus Gp157	NA
UHGV-0208441_30	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0208441_30	Structural annotation	PF05565	NA	NA
UHGV-0208441_36	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0208441_36	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0208441_36	UniRef90	UniRef90_UPI0015933ACD	helix-turn-helix domain-containing protein	NA
UHGV-0208441_36	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0208441_36	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0208441_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0208441_36	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-0208441_39	PHROG	phrog_3292	NA	unknown function
UHGV-0208441_39	UniRef90	UniRef90_A0A1B3MA90	KTSC domain protein	NA
UHGV-0208441_39	eggNOG-mapper	43989.cce_4770	KTSC domain	NA
UHGV-0208441_39	Pfam	PF13619	KTSC domain	KTSC
UHGV-0208441_39	Structural annotation	PF13619	NA	NA
UHGV-0208441_40	KOfam	K14059	int; integrase	NA
UHGV-0208441_40	PHROG	phrog_1	integrase	integration and excision
UHGV-0208441_40	UniRef90	UniRef90_A0A2Z4QB94	Tyr recombinase domain-containing protein	NA
UHGV-0208441_40	eggNOG-mapper	641112.ACOK01000111_gene1860	Phage integrase family	NA
UHGV-0208441_40	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0208441_40	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0208441_40	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0208441_41	Structural annotation	PF17917	NA	NA
UHGV-0208441_43	PHROG	phrog_15863	NA	unknown function
UHGV-0208441_43	UniRef90	UniRef90_K1RTM4	DnaJ domain protein	NA
UHGV-0208441_43	eggNOG-mapper	693746.OBV_01780	DnaJ molecular chaperone homology domain	NA
UHGV-0208441_43	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0208441_44	Structural annotation	NF040976	NA	NA
UHGV-0208441_48	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0208441_48	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0208441_48	UniRef90	UniRef90_A0A1M5YHQ5	Phage terminase large subunit	NA
UHGV-0208441_48	eggNOG-mapper	693746.OBV_01690	phage Terminase large subunit	NA
UHGV-0208441_48	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0208441_48	COG	COG1783	Phage terminase large subunit	NA
UHGV-0208441_48	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0208441_50	PHROG	phrog_156	portal protein	head and packaging
UHGV-0208441_50	eggNOG-mapper	693746.OBV_01670	NA	NA
UHGV-0208441_50	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0208441_52	PHROG	phrog_422	major head protein	head and packaging
UHGV-0208441_52	UniRef90	UniRef90_A0A8J6JH37	Chitobiase/beta-hexosaminidase C-terminal domain-containing protein	NA
UHGV-0208441_52	eggNOG-mapper	755731.Clo1100_2434	NA	NA
UHGV-0208441_52	Pfam	PF13290	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
UHGV-0208441_52	Structural annotation	PF19821, PF13287, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0208441_53	eggNOG-mapper	1519439.JPJG01000011_gene57	NA	NA
UHGV-0208441_53	Structural annotation	PF11650	NA	NA
UHGV-0208441_54	UniRef90	UniRef90_A0A4D7ASB8	NA	NA
UHGV-0208441_54	eggNOG-mapper	693746.OBV_01680	NA	NA
UHGV-0208441_54	Structural annotation	PF11134, MF_03027, NF010237, TIGR03511, COG2319	NA	NA
UHGV-0208441_55	PHROG	phrog_892	tail fiber protein	tail
UHGV-0208441_57	KOfam	K07273	acm; lysozyme	NA
UHGV-0208441_57	PHROG	phrog_291	endolysin	lysis
UHGV-0208441_57	UniRef90	UniRef90_B0NER8	Lysozyme M1	NA
UHGV-0208441_57	eggNOG-mapper	877415.JNJQ01000013_gene314	Glycosyl hydrolases family 25	NA
UHGV-0208441_57	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0208441_57	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA