UHGV-0208905

Genome information

Genome length 19,561 bps

CDS count 27

Completeness 57.89% (medium-quality)

geNomad score 0.9823

Prediction confidence Confident

Genome information
Genome ID	UHGV-0208905
vOTU ID	vOTU-030870
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN11893710_a1_ct44043_vs1@Siphoviridae__sp._ctwFl1
BioSample	SAMN11893710
Country	Ireland
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.89% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9823
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.38
Jumbo phage	No

Genome content
Genome length	19,561 bps
GC content	52.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	27
CDS density	97.56%
Average CDS length	709.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0208905_1	PHROG	phrog_16701	peptidase	other
UHGV-0208905_1	UniRef90	UniRef90_A0A316L5D3	Pept_C1 domain-containing protein	NA
UHGV-0208905_1	eggNOG-mapper	536019.Mesop_3522	Papain family cysteine protease	NA
UHGV-0208905_1	Pfam	PF00112	Papain family cysteine protease	Peptidase_C1
UHGV-0208905_1	Pfam	PF01473	Putative cell wall binding repeat	Choline_bind_1
UHGV-0208905_1	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0208905_1	COG	COG4870	Cysteine protease, C1A family	NA
UHGV-0208905_1	Structural annotation	PF00112, PF19127, TIGR04035, COG4870	NA	NA
UHGV-0208905_2	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0208905_2	PHROG	phrog_435	endolysin	lysis
UHGV-0208905_2	UniRef90	UniRef90_R6NQL7	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0208905_2	eggNOG-mapper	1027396.LMOSA_21580	Ami_3	NA
UHGV-0208905_2	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0208905_2	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0208905_2	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0208905_3	PHROG	phrog_13256	NA	unknown function
UHGV-0208905_3	eggNOG-mapper	1160721.RBI_I01912	NA	NA
UHGV-0208905_4	PHROG	phrog_1863	NA	unknown function
UHGV-0208905_4	UniRef90	UniRef90_A0A2K9NYV1	Holin	NA
UHGV-0208905_4	eggNOG-mapper	556261.HMPREF0240_01265	NA	NA
UHGV-0208905_5	PHROG	phrog_27545	NA	unknown function
UHGV-0208905_5	UniRef90	UniRef90_D1PRE7	Glycosyl hydrolase, family 18 family protein	NA
UHGV-0208905_5	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-0208905_6	eggNOG-mapper	1234664.AMRO01000024_gene1820	NA	NA
UHGV-0208905_7	PHROG	phrog_9534	head protein	head and packaging
UHGV-0208905_7	eggNOG-mapper	665956.HMPREF1032_02939	COG NOG18825 non supervised orthologous group	NA
UHGV-0208905_7	Structural annotation	PF20747	NA	NA
UHGV-0208905_8	PHROG	phrog_538	minor tail protein	tail
UHGV-0208905_8	UniRef90	UniRef90_UPI000C7C9115	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0208905_8	eggNOG-mapper	665956.HMPREF1032_02940	NA	NA
UHGV-0208905_8	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0208905_8	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0208905_9	PHROG	phrog_36410	NA	unknown function
UHGV-0208905_9	UniRef90	UniRef90_UPI000C7AD134	phage tail family protein	NA
UHGV-0208905_9	eggNOG-mapper	665956.HMPREF1032_02941	Phage tail protein	NA
UHGV-0208905_9	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0208905_10	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0208905_10	UniRef90	UniRef90_A0A059N3D7	Phage tail tape measure protein, TP901 family	NA
UHGV-0208905_10	eggNOG-mapper	552396.HMPREF0863_00269	Phage tail tape measure protein, TP901 family	NA
UHGV-0208905_10	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0208905_10	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0208905_10	COG	COG5283	Phage-related tail protein	NA
UHGV-0208905_10	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0208905_11	PHROG	phrog_706	NA	unknown function
UHGV-0208905_11	UniRef90	UniRef90_UPI0009DF23C8	Gp15 family bacteriophage protein	NA
UHGV-0208905_11	eggNOG-mapper	1134413.ANNK01000120_gene2016	Bacteriophage Gp15 protein	NA
UHGV-0208905_11	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0208905_11	Structural annotation	PF06854	NA	NA
UHGV-0208905_12	UniRef90	UniRef90_A0A143ZVS5	Cse1 domain-containing protein	NA
UHGV-0208905_12	Structural annotation	PF10666	NA	NA
UHGV-0208905_13	PHROG	phrog_820	major tail protein	tail
UHGV-0208905_13	UniRef90	UniRef90_A0A3R6YSE8	Capsid protein	NA
UHGV-0208905_13	eggNOG-mapper	469378.Ccur_02690	Bacterial Ig-like domain (group 2)	NA
UHGV-0208905_13	COG	COG5492	NA	NA
UHGV-0208905_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0208905_14	Structural annotation	PF12691	NA	NA
UHGV-0208905_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0208905_15	UniRef90	UniRef90_A0A6A7K9U7	Minor capsid protein	NA
UHGV-0208905_15	eggNOG-mapper	428125.CLOLEP_00180	Minor capsid protein	NA
UHGV-0208905_15	Structural annotation	PF11114	NA	NA
UHGV-0208905_16	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0208905_16	UniRef90	UniRef90_UPI000C77160F	putative minor capsid protein	NA
UHGV-0208905_16	eggNOG-mapper	1449343.JQLQ01000002_gene1330	Minor capsid protein	NA
UHGV-0208905_16	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0208905_16	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-0208905_16	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0208905_17	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0208905_18	PHROG	phrog_267	major head protein	head and packaging
UHGV-0208905_18	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-0208905_18	eggNOG-mapper	748224.HMPREF9436_03335	NA	NA
UHGV-0208905_18	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0208905_19	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0208905_19	UniRef90	UniRef90_A0A1B1IN83	Scaffold protein	NA
UHGV-0208905_19	eggNOG-mapper	160799.PBOR_24090	NA	NA
UHGV-0208905_21	UniRef90	UniRef90_R6AQU3	Conserved protein	NA
UHGV-0208905_21	eggNOG-mapper	1123489.AUAN01000010_gene361	NA	NA
UHGV-0208905_21	Structural annotation	PF20111	NA	NA
UHGV-0208905_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0208905_22	UniRef90	UniRef90_A0A174ZWV0	Phage minor capsid protein 2	NA
UHGV-0208905_22	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0208905_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0208905_22	COG	COG2369	NA	NA
UHGV-0208905_22	Structural annotation	PF06152	NA	NA
UHGV-0208905_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-0208905_23	UniRef90	UniRef90_A0A374BVV6	Phage portal protein	NA
UHGV-0208905_23	eggNOG-mapper	1120998.AUFC01000030_gene2232	NA	NA
UHGV-0208905_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0208905_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0208905_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0208905_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0208905_24	UniRef90	UniRef90_UPI001F3FE6C5	terminase family protein	NA
UHGV-0208905_24	eggNOG-mapper	642492.Clole_0814	Phage terminase, large subunit, PBSX family	NA
UHGV-0208905_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0208905_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0208905_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0208905_24	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0208905_25	UniRef90	UniRef90_UPI001C02085D	phage terminase small subunit-related protein	NA
UHGV-0208905_26	UniRef90	UniRef90_UPI001BB0884F	NA	NA
UHGV-0208905_26	eggNOG-mapper	580331.Thit_1400	NA	NA
UHGV-0208905_26	Structural annotation	PF07374, TIGR01636	NA	NA