UHGV-0209155

Genome information

Genome length 21,999 bps

CDS count 29

Completeness 54.20% (medium-quality)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-0209155
vOTU ID	vOTU-028522
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN09781788_a1_ct11071_vs1@Siphoviridae__sp._ctcGM1
BioSample	SAMN09781788
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.20% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	12.72
Jumbo phage	No

Genome content
Genome length	21,999 bps
GC content	52.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	29
CDS density	94.68%
Average CDS length	723.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0209155_1	PHROG	phrog_13845	NA	unknown function
UHGV-0209155_1	eggNOG-mapper	1399942.U3PDR2_9CAUD	NA	NA
UHGV-0209155_1	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0209155_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0209155_2	UniRef90	UniRef90_A0A2A7ALT4	Terminase	NA
UHGV-0209155_2	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0209155_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0209155_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0209155_2	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0209155_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0209155_3	UniRef90	UniRef90_A0A2A7B6S8	Phage portal protein	NA
UHGV-0209155_3	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0209155_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0209155_3	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0209155_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0209155_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0209155_4	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0209155_4	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0209155_4	UniRef90	UniRef90_UPI00111E41DA	Clp protease ClpP	NA
UHGV-0209155_4	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0209155_4	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0209155_4	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0209155_4	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0209155_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0209155_5	UniRef90	UniRef90_A0A2A7B712	Phage major capsid protein	NA
UHGV-0209155_5	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0209155_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0209155_5	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0209155_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0209155_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0209155_5	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0209155_6	PHROG	phrog_749	NA	unknown function
UHGV-0209155_6	UniRef90	UniRef90_A0A371IJS1	Phage gp6-like head-tail connector protein	NA
UHGV-0209155_6	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-0209155_7	PHROG	phrog_19734	NA	unknown function
UHGV-0209155_7	UniRef90	UniRef90_A0A0D8I708	Phage head-tail joining protein	NA
UHGV-0209155_7	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0209155_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0209155_8	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0209155_8	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0209155_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0209155_9	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0209155_9	eggNOG-mapper	33035.JPJF01000039_gene277	NA	NA
UHGV-0209155_9	Structural annotation	TIGR01725	NA	NA
UHGV-0209155_10	PHROG	phrog_88	major tail protein	tail
UHGV-0209155_10	UniRef90	UniRef90_G9YSC5	Phage major tail protein, phi13 family	NA
UHGV-0209155_10	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0209155_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0209155_10	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0209155_13	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0209155_13	UniRef90	UniRef90_A0A2A7ALS3	TMP_3 domain-containing protein	NA
UHGV-0209155_13	eggNOG-mapper	596328.HMPREF0578_1241	phage tail tape measure protein	NA
UHGV-0209155_13	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0209155_13	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0209155_13	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0209155_13	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0209155_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0209155_14	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0209155_14	eggNOG-mapper	1487921.DP68_11370	tail component	NA
UHGV-0209155_14	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0209155_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-0209155_14	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0209155_15	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0209155_15	UniRef90	UniRef90_A0A2A7AM44	Prophage_tail domain-containing protein	NA
UHGV-0209155_15	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0209155_15	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0209155_15	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0209155_15	COG	COG4926	Phage-related protein	NA
UHGV-0209155_15	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0209155_18	KOfam	K07273	acm; lysozyme	NA
UHGV-0209155_18	PHROG	phrog_291	endolysin	lysis
UHGV-0209155_18	UniRef90	UniRef90_UPI001D0EE7D8	glycoside hydrolase family 25 protein	NA
UHGV-0209155_18	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0209155_18	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0209155_18	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0209155_18	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0209155_19	PHROG	phrog_1863	NA	unknown function
UHGV-0209155_19	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0209155_20	PHROG	phrog_15303	NA	unknown function
UHGV-0209155_21	Structural annotation	PF16509, TIGR03209, COG2739	NA	NA
UHGV-0209155_22	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0209155_22	UniRef90	UniRef90_UPI001C0BF339	transcriptional regulator	NA
UHGV-0209155_22	eggNOG-mapper	887929.HMP0721_2409	NA	NA
UHGV-0209155_22	Structural annotation	PF18337, PF00847	NA	NA
UHGV-0209155_23	eggNOG-mapper	1235798.C817_04600	NA	NA
UHGV-0209155_23	Structural annotation	PF13560, NF040522	NA	NA
UHGV-0209155_26	PHROG	phrog_22984	NA	unknown function
UHGV-0209155_27	PHROG	phrog_16490	NA	unknown function
UHGV-0209155_28	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0209155_29	eggNOG-mapper	1378168.N510_03079	NA	NA