UHGV-0209305

Genome information

Genome length 33,050 bps

CDS count 55

Completeness 97.81% (high-quality)

geNomad score 0.9779

Prediction confidence Confident

Genome information
Genome ID	UHGV-0209305
vOTU ID	vOTU-070367
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN10290188_a1_ct5878_vs1@linear@Myoviridae__sp._cttLL1
BioSample	SAMN10290188
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.81% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9779
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.01
Jumbo phage	No

Genome content
Genome length	33,050 bps
GC content	47.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	92.57%
Average CDS length	560.18 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0209305_1	eggNOG-mapper	1297617.JPJD01000020_gene310	Phage Terminase	NA
UHGV-0209305_1	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0209305_2	PHROG	phrog_12	portal protein	head and packaging
UHGV-0209305_2	UniRef90	UniRef90_A0A6N7WQB7	Phage portal protein	NA
UHGV-0209305_2	eggNOG-mapper	397290.C810_00419	Phage portal protein	NA
UHGV-0209305_2	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0209305_2	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0209305_2	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0209305_3	KOfam	K06904	NA	NA
UHGV-0209305_3	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0209305_3	UniRef90	UniRef90_A0A6N7WM98	HK97 family phage prohead protease	NA
UHGV-0209305_3	eggNOG-mapper	397290.C810_00420	Phage prohead protease, HK97 family	NA
UHGV-0209305_3	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0209305_3	COG	COG3740	Phage head maturation protease	NA
UHGV-0209305_3	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0209305_4	PHROG	phrog_10	major head protein	head and packaging
UHGV-0209305_4	UniRef90	UniRef90_A0A6N7W8S7	Phage major capsid protein	NA
UHGV-0209305_4	eggNOG-mapper	397290.C810_00421	phage major capsid protein, HK97 family	NA
UHGV-0209305_4	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0209305_4	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0209305_4	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0209305_4	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0209305_5	PHROG	phrog_5223	neck protein	connector
UHGV-0209305_5	UniRef90	UniRef90_A0A6N7WPD3	DNA-packaging protein	NA
UHGV-0209305_5	eggNOG-mapper	411470.RUMGNA_02067	NA	NA
UHGV-0209305_6	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0209305_6	UniRef90	UniRef90_A0A6N7WPN6	Phage head closure protein	NA
UHGV-0209305_6	eggNOG-mapper	397290.C810_00424	NA	NA
UHGV-0209305_6	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0209305_6	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0209305_7	UniRef90	UniRef90_R9KQ46	HK97 gp10 family phage protein	NA
UHGV-0209305_7	eggNOG-mapper	397290.C810_00425	NA	NA
UHGV-0209305_7	Structural annotation	TIGR01725	NA	NA
UHGV-0209305_8	eggNOG-mapper	411470.RUMGNA_02072	NA	NA
UHGV-0209305_8	Structural annotation	PF05657, NF040576, COG3978	NA	NA
UHGV-0209305_9	PHROG	phrog_88	major tail protein	tail
UHGV-0209305_9	UniRef90	UniRef90_A0A6N7W8R8	Phage tail protein	NA
UHGV-0209305_9	eggNOG-mapper	397290.C810_00427	phage major tail protein, phi13 family	NA
UHGV-0209305_9	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0209305_9	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0209305_10	PHROG	phrog_2115	tail protein	tail
UHGV-0209305_10	eggNOG-mapper	397290.C810_00428	NA	NA
UHGV-0209305_10	Structural annotation	PF11836	NA	NA
UHGV-0209305_11	PHROG	phrog_5493	tail length tape measure protein	tail
UHGV-0209305_11	UniRef90	UniRef90_A0A6N7WQA7	Phage tail protein	NA
UHGV-0209305_11	eggNOG-mapper	498761.HM1_2969	nuclear chromosome segregation	NA
UHGV-0209305_11	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0209305_12	PHROG	phrog_36410	NA	unknown function
UHGV-0209305_12	UniRef90	UniRef90_A0A6N7WM83	Phage tail family protein	NA
UHGV-0209305_12	eggNOG-mapper	411470.RUMGNA_02077	COG NOG18823 non supervised orthologous group	NA
UHGV-0209305_12	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0209305_12	COG	COG4722	Phage-related protein YomH	NA
UHGV-0209305_12	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0209305_13	PHROG	phrog_538	minor tail protein	tail
UHGV-0209305_13	UniRef90	UniRef90_UPI001111490C	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0209305_13	eggNOG-mapper	397290.C810_00431	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0209305_13	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0209305_13	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0209305_14	PHROG	phrog_1220	head protein	head and packaging
UHGV-0209305_14	UniRef90	UniRef90_E2ELJ8	Truncated putative phage structural protein	NA
UHGV-0209305_14	eggNOG-mapper	864178.E2ELJ8_9CAUD	cell adhesion	NA
UHGV-0209305_14	Structural annotation	PF20747	NA	NA
UHGV-0209305_15	PHROG	phrog_5302	tail protein	tail
UHGV-0209305_15	eggNOG-mapper	411468.CLOSCI_01504	NA	NA
UHGV-0209305_15	Structural annotation	PF16323, COG3979	NA	NA
UHGV-0209305_16	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0209305_16	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0209305_16	UniRef90	UniRef90_A0A6N7WLS1	RNA-directed DNA polymerase	NA
UHGV-0209305_16	eggNOG-mapper	411468.CLOSCI_01505	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0209305_16	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0209305_16	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0209305_16	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0209305_16	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0209305_18	eggNOG-mapper	428125.CLOLEP_01430	NA	NA
UHGV-0209305_18	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0209305_19	PHROG	phrog_199	holin	lysis
UHGV-0209305_19	UniRef90	UniRef90_A0A6N7WQE2	Phage holin family protein	NA
UHGV-0209305_19	eggNOG-mapper	411470.RUMGNA_02086	NA	NA
UHGV-0209305_19	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0209305_19	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0209305_19	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0209305_20	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0209305_20	PHROG	phrog_12727	endolysin	lysis
UHGV-0209305_20	UniRef90	UniRef90_A0A6N7W8R7	Peptidoglycan hydrolase	NA
UHGV-0209305_20	eggNOG-mapper	665950.HMPREF1025_02673	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0209305_20	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0209305_20	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0209305_20	Pfam	PF01476	LysM domain	LysM
UHGV-0209305_20	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0209305_20	Structural annotation	PF01832, PF01510, PF18342, NF038016, NF041850, COG1705, COG5632	NA	NA
UHGV-0209305_23	KOfam	K14059	int; integrase	NA
UHGV-0209305_23	PHROG	phrog_1	integrase	integration and excision
UHGV-0209305_23	UniRef90	UniRef90_A0A6N7W078	Site-specific integrase	NA
UHGV-0209305_23	eggNOG-mapper	1235793.C809_00531	Phage integrase family	NA
UHGV-0209305_23	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0209305_23	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0209305_23	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0209305_24	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0209305_24	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0209305_24	UniRef90	UniRef90_A0A6N7WDU7	Helix-turn-helix transcriptional regulator	NA
UHGV-0209305_24	eggNOG-mapper	742741.HMPREF9475_00399	Helix-turn-helix XRE-family like proteins	NA
UHGV-0209305_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0209305_24	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0209305_26	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0209305_26	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0209305_26	UniRef90	UniRef90_A0A6N7W070	Helix-turn-helix transcriptional regulator	NA
UHGV-0209305_26	eggNOG-mapper	641107.CDLVIII_1309	Helix-turn-helix XRE-family like proteins	NA
UHGV-0209305_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0209305_26	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0209305_26	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0209305_27	eggNOG-mapper	397291.C804_04965	Belongs to the UPF0758 family	NA
UHGV-0209305_27	COG	COG2003	DNA repair protein RadC, contains a helix-hairpin-helix DNA-binding motif	NA
UHGV-0209305_29	PHROG	phrog_4068	NA	unknown function
UHGV-0209305_29	Structural annotation	PF06657	NA	NA
UHGV-0209305_35	Structural annotation	PF12286, MF_00839, NF007780	NA	NA
UHGV-0209305_36	PHROG	phrog_6058	NA	unknown function
UHGV-0209305_36	UniRef90	UniRef90_A0A3A9SV11	DNA-binding protein	NA
UHGV-0209305_36	eggNOG-mapper	411468.CLOSCI_01465	NA	NA
UHGV-0209305_36	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0209305_38	PHROG	phrog_625	NA	unknown function
UHGV-0209305_38	UniRef90	UniRef90_A0A395V9H0	ASCH domain-containing protein	NA
UHGV-0209305_38	eggNOG-mapper	397290.C810_01502	NA	NA
UHGV-0209305_38	Structural annotation	PF12961	NA	NA
UHGV-0209305_40	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0209305_40	PHROG	phrog_26861	NA	unknown function
UHGV-0209305_40	UniRef90	UniRef90_A0A6N7WGM1	Single-stranded DNA-binding protein	NA
UHGV-0209305_40	eggNOG-mapper	1195236.CTER_4948	PFAM single-strand binding protein	NA
UHGV-0209305_40	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0209305_40	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0209305_40	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0209305_42	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0209305_42	eggNOG-mapper	397290.C810_00404	NA	NA
UHGV-0209305_42	Structural annotation	PF21578	NA	NA
UHGV-0209305_44	PHROG	phrog_824	NA	unknown function
UHGV-0209305_44	UniRef90	UniRef90_A0A6N7W260	VRR-NUC domain-containing protein	NA
UHGV-0209305_44	eggNOG-mapper	397290.C810_00407	VRR_NUC	NA
UHGV-0209305_44	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0209305_45	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0209305_45	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0209305_45	UniRef90	UniRef90_A0A6N7W8U8	ParA family protein	NA
UHGV-0209305_45	eggNOG-mapper	610130.Closa_0717	AAA domain	NA
UHGV-0209305_45	Pfam	PF13614	AAA domain	AAA_31
UHGV-0209305_45	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0209305_45	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0209305_46	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0209305_46	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0209305_46	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0209305_47	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0209305_47	PHROG	phrog_15982	NA	unknown function
UHGV-0209305_47	UniRef90	UniRef90_A0A6N7WQC9	Chromosome partitioning protein ParB	NA
UHGV-0209305_47	eggNOG-mapper	397290.C810_00410	ParB-like nuclease domain	NA
UHGV-0209305_47	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0209305_47	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0209305_52	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0209305_52	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0209305_52	UniRef90	UniRef90_A0A6N7WLU2	Single-stranded DNA-binding protein	NA
UHGV-0209305_52	eggNOG-mapper	411470.RUMGNA_02057	Single-strand binding protein family	NA
UHGV-0209305_52	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0209305_52	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0209305_52	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0209305_52	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0209305_53	PHROG	phrog_1558	NA	unknown function
UHGV-0209305_53	UniRef90	UniRef90_UPI001EE9266C	sigma-70 region 4 domain-containing protein	NA
UHGV-0209305_53	eggNOG-mapper	411470.RUMGNA_02058	NA	NA
UHGV-0209305_53	Structural annotation	PF08281, TIGR01636	NA	NA
UHGV-0209305_55	UniRef90	UniRef90_A0A6N7W8S4	HNH endonuclease	NA
UHGV-0209305_55	eggNOG-mapper	397290.C810_00416	HNH endonuclease	NA
UHGV-0209305_55	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA