UHGV-0209307

Genome information

vOTU vOTU-020254

Genome length 18,368 bps

CDS count 26

Completeness 50.88% (medium-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0209307
vOTU ID	vOTU-020254
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN09781782_a1_ct124318_vs1@Myoviridae__sp._ctnrv1
BioSample	SAMN09781782
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.88% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.87
Jumbo phage	No

Genome content
Genome length	18,368 bps
GC content	47.07%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	26
CDS density	92.23%
Average CDS length	655.73 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0209307_1	PHROG	phrog_1066	NA	unknown function
UHGV-0209307_1	eggNOG-mapper	1094508.Tsac_2428	NA	NA
UHGV-0209307_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0209307_2	UniRef90	UniRef90_A0A350U004	Terminase large subunit	NA
UHGV-0209307_2	eggNOG-mapper	626523.GCWU000342_01028	Phage terminase-like protein large subunit	NA
UHGV-0209307_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0209307_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0209307_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0209307_2	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0209307_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0209307_3	UniRef90	UniRef90_A0A1T4XJH4	Phage portal protein, HK97 family	NA
UHGV-0209307_3	eggNOG-mapper	1235793.C809_01918	Phage portal protein	NA
UHGV-0209307_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0209307_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0209307_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0209307_4	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0209307_4	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0209307_4	UniRef90	UniRef90_A0A350TW16	Peptidase (Fragment)	NA
UHGV-0209307_4	eggNOG-mapper	1033738.CAEP01000167_gene3589	Serine dehydrogenase proteinase	NA
UHGV-0209307_4	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0209307_4	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0209307_4	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0209307_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0209307_5	UniRef90	UniRef90_A0A350TW17	Phage major capsid protein (Fragment)	NA
UHGV-0209307_5	eggNOG-mapper	411470.RUMGNA_02065	NA	NA
UHGV-0209307_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0209307_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0209307_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0209307_6	PHROG	phrog_5223	neck protein	connector
UHGV-0209307_6	UniRef90	UniRef90_B6W9Y5	Putative phage DNA packaging protein	NA
UHGV-0209307_6	eggNOG-mapper	561177.ANHYDRO_01411	NA	NA
UHGV-0209307_6	Structural annotation	TIGR01560	NA	NA
UHGV-0209307_7	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0209307_7	UniRef90	UniRef90_UPI001B3C8C78	phage head closure protein	NA
UHGV-0209307_7	eggNOG-mapper	1033738.CAEP01000018_gene3675	head-tail adaptor	NA
UHGV-0209307_7	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0209307_8	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0209307_8	UniRef90	UniRef90_A0A7C6PS93	HK97 gp10 family phage protein	NA
UHGV-0209307_8	eggNOG-mapper	1121871.AUAT01000030_gene1030	NA	NA
UHGV-0209307_8	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0209307_8	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0209307_9	PHROG	phrog_78	tail terminator	connector
UHGV-0209307_9	eggNOG-mapper	1408311.JNJM01000036_gene52	NA	NA
UHGV-0209307_9	Structural annotation	PF20765	NA	NA
UHGV-0209307_10	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0209307_10	eggNOG-mapper	755731.Clo1100_0552	NA	NA
UHGV-0209307_10	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0209307_11	eggNOG-mapper	1280689.AUJC01000007_gene3310	NA	NA
UHGV-0209307_11	Structural annotation	PF17388	NA	NA
UHGV-0209307_12	eggNOG-mapper	1121423.JONT01000041_gene954	NA	NA
UHGV-0209307_13	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0209307_13	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0209307_13	UniRef90	UniRef90_A0A350TW28	Phage tail tape measure protein	NA
UHGV-0209307_13	eggNOG-mapper	1321782.HMPREF1986_01369	Phage tail tape measure protein, TP901 family	NA
UHGV-0209307_13	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0209307_13	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0209307_13	COG	COG5283	Phage-related tail protein	NA
UHGV-0209307_13	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0209307_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0209307_14	UniRef90	UniRef90_A0A350TW29	Phage tail protein	NA
UHGV-0209307_14	eggNOG-mapper	545697.HMPREF0216_00910	tail component	NA
UHGV-0209307_14	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0209307_14	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0209307_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-0209307_14	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0209307_15	PHROG	phrog_3639	minor tail protein	tail
UHGV-0209307_15	UniRef90	UniRef90_A0A396NMY3	NA	NA
UHGV-0209307_15	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0209307_15	COG	COG5434	Polygalacturonase	NA
UHGV-0209307_17	PHROG	phrog_2310	NA	unknown function
UHGV-0209307_17	eggNOG-mapper	1460635.JCM19038_2823	NA	NA
UHGV-0209307_18	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0209307_18	UniRef90	UniRef90_A0A396NSB6	Prophage_tail domain-containing protein	NA
UHGV-0209307_18	eggNOG-mapper	1443125.Z962_07985	Prophage endopeptidase tail	NA
UHGV-0209307_18	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0209307_18	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0209307_18	COG	COG4926	Phage-related protein	NA
UHGV-0209307_18	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0209307_19	PHROG	phrog_937	hemolysin	other
UHGV-0209307_19	eggNOG-mapper	1007096.BAGW01000017_gene814	NA	NA
UHGV-0209307_21	PHROG	phrog_13256	NA	unknown function
UHGV-0209307_21	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0209307_22	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0209307_22	UniRef90	UniRef90_R5ADG8	Putative transcriptional regulator XRE family	NA
UHGV-0209307_22	eggNOG-mapper	1007096.BAGW01000035_gene1350	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0209307_22	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0209307_22	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0209307_24	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0209307_24	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0209307_24	UniRef90	UniRef90_A0A7I8D1H8	Putative antirepressor - phage associated	NA
UHGV-0209307_24	eggNOG-mapper	1232449.BAHV02000010_gene2739	BRO family, N-terminal domain	NA
UHGV-0209307_24	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0209307_24	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0209307_24	COG	COG3617	Prophage antirepressor	NA
UHGV-0209307_24	Structural annotation	PF02498, PF03374, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0209307_25	PHROG	phrog_36029	NA	unknown function
UHGV-0209307_25	UniRef90	UniRef90_A0A318KD97	Superfamily 6 holin (LLH)	NA
UHGV-0209307_25	eggNOG-mapper	411468.CLOSCI_01511	NA	NA
UHGV-0209307_26	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0209307_26	UniRef90	UniRef90_A0A0X8VCT6	NlpC/P60 domain-containing protein	NA
UHGV-0209307_26	eggNOG-mapper	411902.CLOBOL_04837	Phage lysozyme	NA
UHGV-0209307_26	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0209307_26	Structural annotation	PF00877, PF01471, NF033743, COG0791	NA	NA