UHGV-0209410

Genome information

Genome length 40,019 bps

CDS count 58

Completeness 100.00% (complete)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-0209410
vOTU ID	vOTU-048478
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SRS055533_a1_ct5444@circular@Myoviridae__sp._cttbF444
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.18
Jumbo phage	No

Genome content
Genome length	40,019 bps
GC content	41.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	93.09%
Average CDS length	648.21 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0209410_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0209410_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0209410_1	UniRef90	UniRef90_A0A173VG78	Helix-turn-helix domain-containing protein	NA
UHGV-0209410_1	eggNOG-mapper	411462.DORLON_00819	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0209410_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0209410_1	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0209410_1	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0209410_2	PHROG	phrog_20886	NA	unknown function
UHGV-0209410_2	UniRef90	UniRef90_UPI000C757FC8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0209410_2	eggNOG-mapper	411462.DORLON_00820	NA	NA
UHGV-0209410_2	Structural annotation	PF06114	NA	NA
UHGV-0209410_3	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0209410_3	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0209410_3	UniRef90	UniRef90_A0A173VG58	Endonuclease	NA
UHGV-0209410_3	eggNOG-mapper	411462.DORLON_00821	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-0209410_3	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0209410_3	COG	COG4748	NA	NA
UHGV-0209410_3	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-0209410_4	eggNOG-mapper	411470.RUMGNA_03228	NA	NA
UHGV-0209410_5	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0209410_5	PHROG	phrog_95	integrase	integration and excision
UHGV-0209410_5	UniRef90	UniRef90_A0A414S2T5	Recombinase family protein	NA
UHGV-0209410_5	eggNOG-mapper	411462.DORLON_00823	Resolvase, N terminal domain	NA
UHGV-0209410_5	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0209410_5	Pfam	PF07508	Recombinase	Recombinase
UHGV-0209410_5	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0209410_5	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0209410_5	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-0209410_6	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0209410_6	PHROG	phrog_435	endolysin	lysis
UHGV-0209410_6	UniRef90	UniRef90_A0A174JR12	N-acetylmuramoyl-L-alanine amidase LytC	NA
UHGV-0209410_6	eggNOG-mapper	411461.DORFOR_01187	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0209410_6	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0209410_6	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0209410_6	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0209410_8	PHROG	phrog_1129	holin	lysis
UHGV-0209410_8	UniRef90	UniRef90_UPI001F15FE24	phage holin family protein	NA
UHGV-0209410_8	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0209410_8	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0209410_8	Structural annotation	PF06946	NA	NA
UHGV-0209410_9	PHROG	phrog_1009	NA	unknown function
UHGV-0209410_9	UniRef90	UniRef90_A0A173RD60	Branched-chain amino acid ABC transporter permease	NA
UHGV-0209410_9	eggNOG-mapper	742765.HMPREF9457_03364	NA	NA
UHGV-0209410_10	eggNOG-mapper	86416.Clopa_2238	NA	NA
UHGV-0209410_11	PHROG	phrog_2310	NA	unknown function
UHGV-0209410_12	PHROG	phrog_28838	NA	unknown function
UHGV-0209410_13	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-0209410_13	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0209410_13	UniRef90	UniRef90_UPI00156E217C	Ig-like domain-containing protein	NA
UHGV-0209410_13	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-0209410_13	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0209410_13	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0209410_13	Structural annotation	PF10651	NA	NA
UHGV-0209410_14	PHROG	phrog_2310	NA	unknown function
UHGV-0209410_15	PHROG	phrog_9478	minor tail protein	tail
UHGV-0209410_15	UniRef90	UniRef90_UPI0008DA1694	phage tail protein	NA
UHGV-0209410_15	eggNOG-mapper	476272.RUMHYD_02865	NA	NA
UHGV-0209410_15	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0209410_15	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0209410_16	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0209410_16	UniRef90	UniRef90_UPI001D093A04	phage tail family protein	NA
UHGV-0209410_16	eggNOG-mapper	1235796.C815_00909	Phage tail protein	NA
UHGV-0209410_16	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0209410_16	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0209410_16	COG	COG4722	Phage-related protein YomH	NA
UHGV-0209410_16	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-0209410_17	PHROG	phrog_1204	tail protein	tail
UHGV-0209410_17	UniRef90	UniRef90_UPI001896B0C6	tape measure protein	NA
UHGV-0209410_17	eggNOG-mapper	1232453.BAIF02000011_gene3367	phage tail tape measure protein	NA
UHGV-0209410_17	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0209410_17	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0209410_17	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0209410_17	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0209410_18	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-0209410_18	eggNOG-mapper	1232453.BAIF02000011_gene3366	NA	NA
UHGV-0209410_19	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0209410_19	UniRef90	UniRef90_UPI001D067B55	tail assembly chaperone	NA
UHGV-0209410_19	eggNOG-mapper	476272.RUMHYD_02861	Phage tail assembly chaperone protein, TAC	NA
UHGV-0209410_19	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0209410_19	Structural annotation	PF12363	NA	NA
UHGV-0209410_20	PHROG	phrog_238	major tail protein	tail
UHGV-0209410_20	UniRef90	UniRef90_A0A173YN47	Phage major tail protein, TP901-1 family	NA
UHGV-0209410_20	eggNOG-mapper	1235798.C817_03471	Phage tail tube protein	NA
UHGV-0209410_20	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0209410_20	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0209410_20	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0209410_21	PHROG	phrog_176	tail terminator	connector
UHGV-0209410_21	UniRef90	UniRef90_UPI001D04E689	NA	NA
UHGV-0209410_21	eggNOG-mapper	476272.RUMHYD_02859	NA	NA
UHGV-0209410_21	Structural annotation	PF11367	NA	NA
UHGV-0209410_22	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0209410_22	UniRef90	UniRef90_UPI00156D85AA	HK97 gp10 family phage protein	NA
UHGV-0209410_22	eggNOG-mapper	476272.RUMHYD_02858	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0209410_22	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0209410_22	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0209410_22	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0209410_23	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0209410_23	eggNOG-mapper	476272.RUMHYD_02857	NA	NA
UHGV-0209410_23	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0209410_24	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0209410_24	UniRef90	UniRef90_A0A173ZES1	Phage gp6-like head-tail connector protein	NA
UHGV-0209410_24	eggNOG-mapper	476272.RUMHYD_02856	Phage gp6-like head-tail connector protein	NA
UHGV-0209410_24	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0209410_24	Structural annotation	PF05135	NA	NA
UHGV-0209410_25	PHROG	phrog_390	Arc-like repressor	transcription regulation
UHGV-0209410_25	UniRef90	UniRef90_UPI00189C3058	Rho termination protein	NA
UHGV-0209410_25	eggNOG-mapper	1197953.I6T7M8_9CAUD	DNA-dependent transcription, termination	NA
UHGV-0209410_26	PHROG	phrog_544	major head protein	head and packaging
UHGV-0209410_26	UniRef90	UniRef90_A0A173ZE35	S-l_SbsC_C domain-containing protein	NA
UHGV-0209410_26	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0209410_26	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0209410_26	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0209410_27	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0209410_27	UniRef90	UniRef90_UPI001D0541EB	NA	NA
UHGV-0209410_27	eggNOG-mapper	1232453.BAIF02000011_gene3358	NA	NA
UHGV-0209410_27	Pfam	PF14265	NA	DUF4355
UHGV-0209410_27	Structural annotation	PF14265	NA	NA
UHGV-0209410_28	KOfam	K07584	NA	NA
UHGV-0209410_28	PHROG	phrog_4478	peptidase	other
UHGV-0209410_28	UniRef90	UniRef90_UPI001D083BB8	ribosomal-processing cysteine protease Prp	NA
UHGV-0209410_28	eggNOG-mapper	476272.RUMHYD_02852	Cysteine protease Prp	NA
UHGV-0209410_28	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0209410_28	COG	COG2868	NA	NA
UHGV-0209410_28	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0209410_29	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0209410_29	UniRef90	UniRef90_UPI000E473058	NA	NA
UHGV-0209410_29	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0209410_29	Pfam	PF14359	NA	DUF4406
UHGV-0209410_29	Structural annotation	PF14359	NA	NA
UHGV-0209410_30	Structural annotation	PF11344	NA	NA
UHGV-0209410_31	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0209410_31	UniRef90	UniRef90_UPI00111156C2	minor capsid protein	NA
UHGV-0209410_31	eggNOG-mapper	476272.RUMHYD_02847	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0209410_31	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0209410_31	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0209410_31	COG	COG2369	NA	NA
UHGV-0209410_32	PHROG	phrog_64	portal protein	head and packaging
UHGV-0209410_32	UniRef90	UniRef90_UPI001A9B67CD	phage portal protein	NA
UHGV-0209410_32	eggNOG-mapper	1232453.BAIF02000011_gene3353	Phage portal protein, SPP1 family	NA
UHGV-0209410_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0209410_32	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0209410_32	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0209410_33	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0209410_33	PHROG	phrog_10250	NA	unknown function
UHGV-0209410_33	UniRef90	UniRef90_UPI001C023397	PBSX family phage terminase large subunit	NA
UHGV-0209410_33	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-0209410_33	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0209410_33	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0209410_33	COG	COG1783	Phage terminase large subunit	NA
UHGV-0209410_33	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0209410_34	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0209410_34	UniRef90	UniRef90_UPI001C027893	phage terminase small subunit	NA
UHGV-0209410_34	eggNOG-mapper	33035.JPJF01000107_gene435	NA	NA
UHGV-0209410_34	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0209410_34	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0209410_34	COG	COG5484	NA	NA
UHGV-0209410_34	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-0209410_35	PHROG	phrog_11237	NA	unknown function
UHGV-0209410_35	eggNOG-mapper	411461.DORFOR_01161	NA	NA
UHGV-0209410_36	PHROG	phrog_6568	NA	unknown function
UHGV-0209410_37	PHROG	phrog_26445	NA	unknown function
UHGV-0209410_37	UniRef90	UniRef90_UPI001EDD5E1E	Trp family transcriptional regulator	NA
UHGV-0209410_37	eggNOG-mapper	742765.HMPREF9457_02112	NA	NA
UHGV-0209410_37	Structural annotation	PF21220, COG2771	NA	NA
UHGV-0209410_40	PHROG	phrog_24386	NA	unknown function
UHGV-0209410_40	eggNOG-mapper	478749.BRYFOR_08546	UMP catabolic process	NA
UHGV-0209410_40	COG	COG0647	Ribonucleotide monophosphatase NagD, HAD superfamily	NA
UHGV-0209410_42	Structural annotation	PF10400	NA	NA
UHGV-0209410_45	PHROG	phrog_7566	NA	unknown function
UHGV-0209410_45	eggNOG-mapper	1280698.AUJS01000007_gene1020	NA	NA
UHGV-0209410_46	PHROG	phrog_15077	NA	unknown function
UHGV-0209410_46	UniRef90	UniRef90_A0A174WLY0	NA	NA
UHGV-0209410_46	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0209410_46	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0209410_47	PHROG	phrog_8470	NA	unknown function
UHGV-0209410_47	UniRef90	UniRef90_UPI001D0719D3	PcfJ domain-containing protein	NA
UHGV-0209410_47	eggNOG-mapper	1235793.C809_01907	PcfJ-like protein	NA
UHGV-0209410_47	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0209410_47	Structural annotation	PF14284	NA	NA
UHGV-0209410_48	UniRef90	UniRef90_UPI0003F6328F	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0209410_48	eggNOG-mapper	1235793.C809_01906	NA	NA
UHGV-0209410_48	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0209410_49	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0209410_49	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0209410_49	UniRef90	UniRef90_A0A6N9JSQ7	RNase H type-1 domain-containing protein	NA
UHGV-0209410_49	eggNOG-mapper	1280698.AUJS01000007_gene1015	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0209410_49	Pfam	PF00075	RNase H	RNase_H
UHGV-0209410_49	COG	COG0328	Ribonuclease HI	NA
UHGV-0209410_49	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0209410_51	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0209410_51	eggNOG-mapper	411461.DORFOR_01138	NA	NA
UHGV-0209410_51	Structural annotation	PF01446	NA	NA
UHGV-0209410_58	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0209410_58	UniRef90	UniRef90_UPI001EDEFE90	helix-turn-helix domain-containing protein	NA
UHGV-0209410_58	eggNOG-mapper	552396.HMPREF0863_02446	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0209410_58	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0209410_58	Structural annotation	PF12844, NF041951, COG1476	NA	NA