UHGV-0209443

Genome information

Genome length 25,058 bps

CDS count 38

Completeness 67.35% (medium-quality)

geNomad score 0.9630

Prediction confidence Confident

Genome information
Genome ID	UHGV-0209443
vOTU ID	vOTU-023464
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN10408149_a1_ct16254_vs1@linear@Myoviridae__sp._ctM3z1
BioSample	SAMN10408149
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.35% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9630
Virus hallmark genes (geNomad)	20
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.69
Jumbo phage	No

Genome content
Genome length	25,058 bps
GC content	58.95%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	93.82%
Average CDS length	620.45 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0209443_1	PHROG	phrog_1224	endolysin	head and packaging
UHGV-0209443_1	UniRef90	UniRef90_UPI001474CB0F	N-acetylmuramidase family protein	NA
UHGV-0209443_1	eggNOG-mapper	1282356.H045_14200	NA	NA
UHGV-0209443_1	Pfam	PF11860	N-acetylmuramidase	Muramidase
UHGV-0209443_1	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0209443_1	Structural annotation	PF11860, NF011856	NA	NA
UHGV-0209443_2	PHROG	phrog_10352	NA	unknown function
UHGV-0209443_2	eggNOG-mapper	1282356.H045_14205	NA	NA
UHGV-0209443_3	PHROG	phrog_89	Rz-like spanin	lysis
UHGV-0209443_3	UniRef90	UniRef90_A0A1U9Q299	Peptidase	NA
UHGV-0209443_3	eggNOG-mapper	1282356.H045_14210	regulatory protein	NA
UHGV-0209443_3	NCBIFam	TIGR03495.1	Rz-like lysis system protein LysB	NA
UHGV-0209443_3	Structural annotation	TIGR03495	NA	NA
UHGV-0209443_4	PHROG	phrog_65	tail terminator	connector
UHGV-0209443_4	UniRef90	UniRef90_A0A1U9Q2R8	Phage tail protein	NA
UHGV-0209443_4	eggNOG-mapper	1282356.H045_14220	P2 phage tail completion protein R (GpR)	NA
UHGV-0209443_4	Pfam	PF06891	P2 phage tail completion protein R (GpR)	P2_Phage_GpR
UHGV-0209443_4	Structural annotation	PF06891	NA	NA
UHGV-0209443_5	PHROG	phrog_26	tail completion or Neck1 protein	connector
UHGV-0209443_5	UniRef90	UniRef90_A0A1G9YDC2	Phage virion morphogenesis (Putative tail completion) protein	NA
UHGV-0209443_5	eggNOG-mapper	1282356.H045_14225	Phage virion morphogenesis family	NA
UHGV-0209443_5	Pfam	PF05069	Phage virion morphogenesis family	Phage_tail_S
UHGV-0209443_5	NCBIFam	TIGR01635.1	phage virion morphogenesis protein	NA
UHGV-0209443_5	COG	COG5005	NA	NA
UHGV-0209443_5	Structural annotation	PF05069, TIGR01635, COG5005	NA	NA
UHGV-0209443_6	PHROG	phrog_9992	baseplate assembly protein	tail
UHGV-0209443_6	UniRef90	UniRef90_A0A5E7A7M3	Phage_base_V domain-containing protein	NA
UHGV-0209443_6	eggNOG-mapper	1395516.PMO01_08620	baseplate assembly protein	NA
UHGV-0209443_6	Pfam	PF04717	Type VI secretion system/phage-baseplate injector OB domain	Phage_base_V
UHGV-0209443_6	Pfam	PF18946	GpV Apex motif	Apex
UHGV-0209443_6	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-0209443_6	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0209443_6	Structural annotation	PF04717, MF_00216, TIGR01644, COG4540	NA	NA
UHGV-0209443_7	KOfam	K06903	NA	NA
UHGV-0209443_7	PHROG	phrog_43	baseplate wedge subunit	tail
UHGV-0209443_7	UniRef90	UniRef90_UPI001F176C73	GPW/gp25 family protein	NA
UHGV-0209443_7	eggNOG-mapper	1282356.H045_14240	Gene 25-like lysozyme	NA
UHGV-0209443_7	Pfam	PF04965	Baseplate wedge protein gp25	GPW_gp25
UHGV-0209443_7	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0209443_7	Structural annotation	PF04965, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0209443_8	PHROG	phrog_4226	baseplate protein	tail
UHGV-0209443_8	UniRef90	UniRef90_A0A5E7AG60	Baseplate_J domain-containing protein	NA
UHGV-0209443_8	eggNOG-mapper	1282356.H045_14245	Baseplate assembly protein	NA
UHGV-0209443_8	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0209443_8	COG	COG3948	Phage-related baseplate assembly protein	NA
UHGV-0209443_8	Structural annotation	PF04865, PF21379, MF_04102, COG3948	NA	NA
UHGV-0209443_9	PHROG	phrog_48	tail protein	tail
UHGV-0209443_9	UniRef90	UniRef90_UPI0015B97C6E	phage tail protein I	NA
UHGV-0209443_9	eggNOG-mapper	1282356.H045_14250	Tail protein	NA
UHGV-0209443_9	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-0209443_9	NCBIFam	TIGR01634.1	phage tail protein I	NA
UHGV-0209443_9	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0209443_9	Structural annotation	PF09684, TIGR01634, COG4385	NA	NA
UHGV-0209443_10	PHROG	phrog_327	tail protein	tail
UHGV-0209443_10	UniRef90	UniRef90_UPI001E3AEFBC	phage tail protein	NA
UHGV-0209443_10	eggNOG-mapper	1005395.CSV86_03332	tail fiber protein	NA
UHGV-0209443_10	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-0209443_10	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0209443_10	Structural annotation	PF12571, PF03406, COG5301	NA	NA
UHGV-0209443_11	PHROG	phrog_188	tail fiber assembly protein	tail
UHGV-0209443_11	UniRef90	UniRef90_UPI000D047ACC	tail fiber assembly protein	NA
UHGV-0209443_11	eggNOG-mapper	1117958.PE143B_0129840	Caudovirales tail fibre assembly protein, lambda gpK	NA
UHGV-0209443_11	Pfam	PF02413	Caudovirales tail fibre assembly protein, lambda gpK	Caudo_TAP
UHGV-0209443_11	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0209443_11	Structural annotation	PF02413	NA	NA
UHGV-0209443_12	KOfam	K06907	NA	NA
UHGV-0209443_12	PHROG	phrog_23	tail sheath	tail
UHGV-0209443_12	UniRef90	UniRef90_A0A263NVE8	Phage tail protein	NA
UHGV-0209443_12	eggNOG-mapper	1282356.H045_14265	Tail sheath protein	NA
UHGV-0209443_12	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0209443_12	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0209443_12	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-0209443_12	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-0209443_13	KOfam	K06908	NA	NA
UHGV-0209443_13	PHROG	phrog_55	head closure	connector
UHGV-0209443_13	UniRef90	UniRef90_A0A7Y1QET4	Phage major tail tube protein	NA
UHGV-0209443_13	eggNOG-mapper	1282356.H045_14270	tail tube protein	NA
UHGV-0209443_13	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-0209443_13	NCBIFam	TIGR01611.1	phage major tail tube protein	NA
UHGV-0209443_13	COG	COG3498	Phage tail tube protein FII	NA
UHGV-0209443_13	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-0209443_14	PHROG	phrog_103	tail protein	tail
UHGV-0209443_14	UniRef90	UniRef90_A0A5B0C2H6	Phage tail assembly protein	NA
UHGV-0209443_14	eggNOG-mapper	1038922.PflQ2_3580	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-0209443_14	Pfam	PF10109	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
UHGV-0209443_14	Structural annotation	PF10109, COG4518	NA	NA
UHGV-0209443_15	PHROG	phrog_6416	tail protein	tail
UHGV-0209443_15	UniRef90	UniRef90_A0A0C2EZH5	NA	NA
UHGV-0209443_15	eggNOG-mapper	1038922.PflQ2_3581	Phage P2 GpE	NA
UHGV-0209443_15	Pfam	PF06528	Phage P2 GpE	Phage_P2_GpE
UHGV-0209443_16	PHROG	phrog_28	tail length tape measure protein	tail
UHGV-0209443_16	UniRef90	UniRef90_A0A5B0C1A6	Phage tail protein	NA
UHGV-0209443_16	eggNOG-mapper	1149133.ppKF707_3083	peptidase	NA
UHGV-0209443_16	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-0209443_16	Structural annotation	PF20155, COG5280	NA	NA
UHGV-0209443_17	KOfam	K06906	NA	NA
UHGV-0209443_17	PHROG	phrog_76	tail protein	tail
UHGV-0209443_17	UniRef90	UniRef90_A0A7Y1Q842	Phage tail protein	NA
UHGV-0209443_17	eggNOG-mapper	1316927.ATKI01000043_gene2954	Phage P2 GpU	NA
UHGV-0209443_17	Pfam	PF06995	Phage P2 GpU	Phage_P2_GpU
UHGV-0209443_17	COG	COG3499	NA	NA
UHGV-0209443_17	Structural annotation	PF06995, TIGR01633, COG3499	NA	NA
UHGV-0209443_18	KOfam	K06905	NA	NA
UHGV-0209443_18	PHROG	phrog_52	tail protein	tail
UHGV-0209443_18	UniRef90	UniRef90_A0A172Z6H8	Late control protein	NA
UHGV-0209443_18	eggNOG-mapper	1124983.PFLCHA0_c20450	Phage late control gene D protein (GPD)	NA
UHGV-0209443_18	Pfam	PF05954	Phage tail baseplate hub (GPD)	Phage_GPD
UHGV-0209443_18	COG	COG3500	NA	NA
UHGV-0209443_21	UniRef90	UniRef90_A0A5B0C2Q5	Helix-turn-helix transcriptional regulator	NA
UHGV-0209443_21	eggNOG-mapper	69328.PVLB_24075	sequence-specific DNA binding	NA
UHGV-0209443_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0209443_21	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0209443_21	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-0209443_22	PHROG	phrog_925	HTH DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0209443_22	UniRef90	UniRef90_A0A1G9YDZ0	Phage-associated protein, BcepMu gp16 family	NA
UHGV-0209443_22	eggNOG-mapper	1221522.B723_06180	NA	NA
UHGV-0209443_22	NCBIFam	TIGR04111.1	phage-associated protein, BcepMu gp16 family	NA
UHGV-0209443_23	PHROG	phrog_25436	NA	unknown function
UHGV-0209443_23	UniRef90	UniRef90_A0A3G7JXK9	NA	NA
UHGV-0209443_23	eggNOG-mapper	1124983.PFLCHA0_c20410	NA	NA
UHGV-0209443_23	NCBIFam	NF041471.1	YmfL family putative regulatory protein	NA
UHGV-0209443_23	Structural annotation	PF06892, NF041471	NA	NA
UHGV-0209443_24	PHROG	phrog_22692	NA	unknown function
UHGV-0209443_25	PHROG	phrog_603	transcriptional regulator	transcription regulation
UHGV-0209443_25	UniRef90	UniRef90_A0A0C5E262	Ogr_Delta domain-containing protein	NA
UHGV-0209443_25	eggNOG-mapper	1211112.ALJC01000075_gene2970	transcriptional activator, Ogr delta	NA
UHGV-0209443_25	Pfam	PF04606	Ogr/Delta-like zinc finger	Ogr_Delta
UHGV-0209443_26	PHROG	phrog_3461	NA	unknown function
UHGV-0209443_26	eggNOG-mapper	1282356.H045_14325	NA	NA
UHGV-0209443_27	PHROG	phrog_3967	NA	unknown function
UHGV-0209443_27	UniRef90	UniRef90_A0A0C2IH72	Putative adenylate kinase	NA
UHGV-0209443_27	eggNOG-mapper	1124983.PFLCHA0_c20380	NA	NA
UHGV-0209443_28	PHROG	phrog_1139	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0209443_28	UniRef90	UniRef90_A0A1J0EG87	Bifunctional DNA primase/helicase	NA
UHGV-0209443_28	eggNOG-mapper	287.DR97_1375	Toprim-like	NA
UHGV-0209443_28	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0209443_28	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0209443_28	Structural annotation	PF06048, PF13155, MF_01625, MF_00017, NF005477, COG5519, COG0358	NA	NA
UHGV-0209443_29	PHROG	phrog_1139	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0209443_29	UniRef90	UniRef90_UPI000BB5B717	ATP-binding protein	NA
UHGV-0209443_29	eggNOG-mapper	287.DR97_1375	Toprim-like	NA
UHGV-0209443_29	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0209443_30	PHROG	phrog_6694	NA	unknown function
UHGV-0209443_30	eggNOG-mapper	1038922.PflQ2_3592	NA	NA
UHGV-0209443_31	eggNOG-mapper	1316927.ATKI01000043_gene2945	NA	NA
UHGV-0209443_32	eggNOG-mapper	1038922.PflQ2_3594	NA	NA
UHGV-0209443_33	PHROG	phrog_2314	NA	unknown function
UHGV-0209443_33	eggNOG-mapper	1226994.AMZB01000118_gene3263	NA	NA
UHGV-0209443_34	eggNOG-mapper	1282356.H045_14335	NA	NA
UHGV-0209443_35	PHROG	phrog_874	NA	unknown function
UHGV-0209443_35	eggNOG-mapper	1357279.N018_13030	NA	NA
UHGV-0209443_35	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0209443_36	PHROG	phrog_18088	NA	unknown function
UHGV-0209443_37	PHROG	phrog_17140	NA	unknown function
UHGV-0209443_38	KOfam	K14059	int; integrase	NA
UHGV-0209443_38	PHROG	phrog_1	integrase	integration and excision
UHGV-0209443_38	UniRef90	UniRef90_A0A5E7VMF1	Defective protein IntQ	NA
UHGV-0209443_38	eggNOG-mapper	1282356.H045_14350	Phage integrase family	NA
UHGV-0209443_38	Pfam	PF12167	Arm DNA-binding domain	Arm-DNA-bind_2
UHGV-0209443_38	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0209443_38	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0209443_38	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0209443_38	Structural annotation	PF00589, PF12167, PF14659, MF_01808, TIGR02224, COG4974	NA	NA