UHGV-0209645

Genome information

vOTU vOTU-020260

Genome length 32,159 bps

CDS count 58

Completeness 74.14% (medium-quality)

geNomad score 0.9786

Prediction confidence Confident

Genome information
Genome ID	UHGV-0209645
vOTU ID	vOTU-020260
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN11893695_a1_ct2186_vs1@linear@Siphoviridae__sp._ct9X21
BioSample	SAMN11893695
Country	Ireland
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.14% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9786
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.53
Jumbo phage	No

Genome content
Genome length	32,159 bps
GC content	50.29%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	87.54%
Average CDS length	489.26 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0209645_1	PHROG	phrog_3366	NA	unknown function
UHGV-0209645_1	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0209645_1	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0209645_2	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0209645_2	UniRef90	UniRef90_A0A2U1BEM0	Minor capsid protein	NA
UHGV-0209645_2	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0209645_2	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0209645_2	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0209645_3	PHROG	phrog_3266	tail completion	connector
UHGV-0209645_3	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0209645_3	Structural annotation	PF12691	NA	NA
UHGV-0209645_4	PHROG	phrog_3099	NA	unknown function
UHGV-0209645_4	eggNOG-mapper	1232443.BAIA02000078_gene23	NA	NA
UHGV-0209645_4	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0209645_5	PHROG	phrog_11299	NA	unknown function
UHGV-0209645_5	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0209645_5	Structural annotation	PF10666	NA	NA
UHGV-0209645_6	PHROG	phrog_706	NA	unknown function
UHGV-0209645_6	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0209645_6	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0209645_6	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0209645_6	Structural annotation	PF06854	NA	NA
UHGV-0209645_7	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0209645_7	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-0209645_7	COG	COG1511	NA	NA
UHGV-0209645_7	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0209645_8	PHROG	phrog_1194	NA	unknown function
UHGV-0209645_8	eggNOG-mapper	693746.OBV_18200	NA	NA
UHGV-0209645_8	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0209645_9	PHROG	phrog_13879	NA	unknown function
UHGV-0209645_9	eggNOG-mapper	693746.OBV_18210	NA	NA
UHGV-0209645_9	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0209645_10	PHROG	phrog_1589	NA	unknown function
UHGV-0209645_10	UniRef90	UniRef90_UPI000A0361DD	fimbrillin family protein	NA
UHGV-0209645_10	eggNOG-mapper	1449050.JNLE01000003_gene2175	Glycine rich protein	NA
UHGV-0209645_10	Pfam	PF12810	Glycine rich protein	Gly_rich
UHGV-0209645_10	Structural annotation	PF12810, PF16893, TIGR04488, COG3979	NA	NA
UHGV-0209645_11	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0209645_11	PHROG	phrog_11157	NA	unknown function
UHGV-0209645_11	UniRef90	UniRef90_UPI001C10C6DC	Ig-like domain-containing protein	NA
UHGV-0209645_11	eggNOG-mapper	476272.RUMHYD_02867	NA	NA
UHGV-0209645_11	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0209645_11	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0209645_11	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0209645_11	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0209645_12	PHROG	phrog_18725	NA	unknown function
UHGV-0209645_12	eggNOG-mapper	693746.OBV_18220	NA	NA
UHGV-0209645_12	Structural annotation	PF13754, COG2372	NA	NA
UHGV-0209645_13	Structural annotation	PF09826, MF_03001, TIGR04528, COG2706	NA	NA
UHGV-0209645_15	eggNOG-mapper	1235797.C816_04174	NA	NA
UHGV-0209645_15	Structural annotation	PF14600	NA	NA
UHGV-0209645_16	PHROG	phrog_4105	NA	unknown function
UHGV-0209645_18	PHROG	phrog_1129	holin	lysis
UHGV-0209645_18	UniRef90	UniRef90_UPI001C124A7D	phage holin family protein	NA
UHGV-0209645_18	eggNOG-mapper	665956.HMPREF1032_01916	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0209645_18	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0209645_18	Structural annotation	PF16079	NA	NA
UHGV-0209645_19	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0209645_19	PHROG	phrog_435	endolysin	lysis
UHGV-0209645_19	UniRef90	UniRef90_A0A564TJ46	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0209645_19	eggNOG-mapper	908340.HMPREF9406_2562	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0209645_19	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0209645_19	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0209645_19	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0209645_20	UniRef90	UniRef90_A0A1C6JAI6	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0209645_22	PHROG	phrog_3754	NA	unknown function
UHGV-0209645_22	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0209645_23	PHROG	phrog_21718	NA	unknown function
UHGV-0209645_23	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0209645_24	PHROG	phrog_22984	NA	unknown function
UHGV-0209645_25	PHROG	phrog_16490	NA	unknown function
UHGV-0209645_25	eggNOG-mapper	1226322.HMPREF1545_00076	NA	NA
UHGV-0209645_26	PHROG	phrog_20016	NA	unknown function
UHGV-0209645_26	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0209645_26	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0209645_26	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0209645_27	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0209645_28	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0209645_29	KOfam	K14059	int; integrase	NA
UHGV-0209645_29	PHROG	phrog_1	integrase	integration and excision
UHGV-0209645_29	UniRef90	UniRef90_A0A174HFN7	Site-specific tyrosine recombinase XerC	NA
UHGV-0209645_29	eggNOG-mapper	641112.ACOK01000111_gene1860	Phage integrase family	NA
UHGV-0209645_29	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0209645_29	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0209645_29	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0209645_30	PHROG	phrog_806	NA	unknown function
UHGV-0209645_30	UniRef90	UniRef90_UPI0016446FB9	NA	NA
UHGV-0209645_30	eggNOG-mapper	693746.OBV_43320	NA	NA
UHGV-0209645_30	Pfam	PF11611	NA	DUF4352
UHGV-0209645_31	PHROG	phrog_806	NA	unknown function
UHGV-0209645_31	UniRef90	UniRef90_UPI00137B5163	NA	NA
UHGV-0209645_31	eggNOG-mapper	397290.C810_05150	NA	NA
UHGV-0209645_31	Pfam	PF11611	NA	DUF4352
UHGV-0209645_31	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0209645_32	KOfam	K14056	puuR; HTH-type transcriptional regulator, repressor for puuD	NA
UHGV-0209645_32	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0209645_32	UniRef90	UniRef90_UPI000E31F980	helix-turn-helix domain-containing protein	NA
UHGV-0209645_32	eggNOG-mapper	324057.Pjdr2_5181	Helix-turn-helix domain	NA
UHGV-0209645_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0209645_32	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0209645_33	UniRef90	UniRef90_UPI0013ECC13D	helix-turn-helix domain-containing protein	NA
UHGV-0209645_33	eggNOG-mapper	411465.PEPMIC_00039	Helix-turn-helix XRE-family like proteins	NA
UHGV-0209645_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0209645_33	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0209645_36	UniRef90	UniRef90_UPI000F0633F9	DNA-binding protein	NA
UHGV-0209645_36	eggNOG-mapper	1235835.C814_03153	NA	NA
UHGV-0209645_36	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0209645_39	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0209645_39	UniRef90	UniRef90_A0A858BRQ4	NA	NA
UHGV-0209645_39	eggNOG-mapper	1238184.CM001792_gene2550	NA	NA
UHGV-0209645_39	Pfam	PF06378	NA	DUF1071
UHGV-0209645_39	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0209645_40	eggNOG-mapper	1238184.CM001792_gene2549	NA	NA
UHGV-0209645_40	Structural annotation	PF12684, MF_03030, TIGR04328, COG4343	NA	NA
UHGV-0209645_41	PHROG	phrog_398	NA	unknown function
UHGV-0209645_41	UniRef90	UniRef90_UPI00137B6F1E	putative HNHc nuclease	NA
UHGV-0209645_41	eggNOG-mapper	1485543.JMME01000021_gene802	Putative HNHc nuclease	NA
UHGV-0209645_41	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0209645_41	Structural annotation	PF16784	NA	NA
UHGV-0209645_42	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0209645_42	UniRef90	UniRef90_A0A6M3JHW0	Putative DNA replication protein	NA
UHGV-0209645_42	eggNOG-mapper	1095750.HMPREF9970_1674	NA	NA
UHGV-0209645_42	Structural annotation	PF01475, NF006999, COG0735	NA	NA
UHGV-0209645_43	PHROG	phrog_9804	NA	unknown function
UHGV-0209645_43	UniRef90	UniRef90_UPI0015C5D332	replicative helicase loader/inhibitor	NA
UHGV-0209645_43	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0209645_43	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0209645_43	Structural annotation	PF11417	NA	NA
UHGV-0209645_44	PHROG	phrog_4973	NA	unknown function
UHGV-0209645_44	UniRef90	UniRef90_UPI001D0904CC	helix-turn-helix domain-containing protein	NA
UHGV-0209645_44	eggNOG-mapper	339671.Asuc_1218	Helix-turn-helix domain	NA
UHGV-0209645_44	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0209645_44	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0209645_45	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0209645_45	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0209645_45	UniRef90	UniRef90_A0A3D4MTY4	Single-stranded DNA-binding protein	NA
UHGV-0209645_45	eggNOG-mapper	1007096.BAGW01000030_gene5	Single-strand binding protein family	NA
UHGV-0209645_45	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0209645_45	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0209645_45	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0209645_45	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0209645_45	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0209645_47	eggNOG-mapper	742738.HMPREF9460_04053	C-5 cytosine-specific DNA methylase	NA
UHGV-0209645_47	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0209645_48	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0209645_48	UniRef90	UniRef90_A0A4D7ANR2	Lar family restriction alleviation protein	NA
UHGV-0209645_48	eggNOG-mapper	742738.HMPREF9460_04054	Restriction alleviation protein Lar	NA
UHGV-0209645_48	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0209645_48	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0209645_49	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0209645_49	UniRef90	UniRef90_A0A845R569	Methyltransferase domain-containing protein	NA
UHGV-0209645_49	eggNOG-mapper	411461.DORFOR_01143	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-0209645_49	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0209645_49	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0209645_49	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0209645_49	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0209645_51	PHROG	phrog_13999	NA	unknown function
UHGV-0209645_51	eggNOG-mapper	1391428.V5KT07_9CAUD	NA	NA
UHGV-0209645_53	eggNOG-mapper	445972.ANACOL_00167	NA	NA
UHGV-0209645_54	PHROG	phrog_38832	NA	unknown function
UHGV-0209645_54	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0209645_57	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-0209645_58	PHROG	phrog_22543	NA	unknown function