UHGV-0209709

Genome information

Genome length 37,139 bps

CDS count 62

Completeness 99.28% (high-quality)

geNomad score 0.9793

Prediction confidence Confident

Genome information
Genome ID	UHGV-0209709
vOTU ID	vOTU-059964
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN09781759_a1_ct178776_vs1@Siphoviridae__sp._ctvST1
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.28% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9793
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.04
Jumbo phage	No

Genome content
Genome length	37,139 bps
GC content	59.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	92.23%
Average CDS length	555.87 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0209709_1	PHROG	phrog_21498	NA	unknown function
UHGV-0209709_1	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-0209709_1	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0209709_1	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0209709_1	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0209709_1	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0209709_1	Structural annotation	PF02195, MF_02015, TIGR04285, TIGR01712, COG1475	NA	NA
UHGV-0209709_2	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0209709_2	UniRef90	UniRef90_UPI001EDE2A13	phage terminase small subunit P27 family	NA
UHGV-0209709_2	eggNOG-mapper	1007096.BAGW01000012_gene2373	Phage terminase, small subunit	NA
UHGV-0209709_2	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0209709_2	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0209709_2	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0209709_2	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0209709_3	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0209709_3	UniRef90	UniRef90_A0A845R4S1	Terminase large subunit	NA
UHGV-0209709_3	eggNOG-mapper	742738.HMPREF9460_00872	Phage Terminase	NA
UHGV-0209709_3	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0209709_3	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0209709_3	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0209709_3	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0209709_5	PHROG	phrog_12	portal protein	head and packaging
UHGV-0209709_5	UniRef90	UniRef90_UPI001958B72F	phage portal protein	NA
UHGV-0209709_5	eggNOG-mapper	1501230.ET33_02290	Phage portal protein	NA
UHGV-0209709_5	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0209709_5	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0209709_5	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0209709_5	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0209709_6	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0209709_6	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0209709_6	UniRef90	UniRef90_UPI00124513AA	Clp protease ClpP	NA
UHGV-0209709_6	eggNOG-mapper	557436.Lreu_1115	Belongs to the peptidase S14 family	NA
UHGV-0209709_6	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0209709_6	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0209709_6	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0209709_7	PHROG	phrog_10	major head protein	head and packaging
UHGV-0209709_7	UniRef90	UniRef90_UPI000B37FFEF	phage major capsid protein	NA
UHGV-0209709_7	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0209709_7	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0209709_7	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0209709_7	Structural annotation	PF05065, PF14182, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0209709_8	UniRef90	UniRef90_UPI0010315EA4	phage gp6-like head-tail connector protein	NA
UHGV-0209709_8	eggNOG-mapper	693746.OBV_20060	NA	NA
UHGV-0209709_8	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0209709_8	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0209709_9	PHROG	phrog_25	head closure Hc1	connector
UHGV-0209709_9	UniRef90	UniRef90_A0A845R2W2	Head-tail adaptor protein	NA
UHGV-0209709_9	eggNOG-mapper	1262449.CP6013_1044	Phage head-tail joining protein	NA
UHGV-0209709_9	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0209709_9	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0209709_9	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0209709_9	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0209709_10	eggNOG-mapper	1203606.HMPREF1526_00975	NA	NA
UHGV-0209709_10	Structural annotation	PF05657	NA	NA
UHGV-0209709_11	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0209709_11	UniRef90	UniRef90_R5IIS5	HK97 gp10 family phage protein	NA
UHGV-0209709_11	eggNOG-mapper	397290.C810_00425	NA	NA
UHGV-0209709_11	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0209709_11	Structural annotation	TIGR01725	NA	NA
UHGV-0209709_12	PHROG	phrog_88	major tail protein	tail
UHGV-0209709_12	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0209709_12	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0209709_13	Structural annotation	PF11836, TIGR01674	NA	NA
UHGV-0209709_15	PHROG	phrog_23464	NA	unknown function
UHGV-0209709_15	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-0209709_15	COG	COG5412	Phage-related protein	NA
UHGV-0209709_15	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0209709_16	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0209709_17	PHROG	phrog_6616	tail protein	tail
UHGV-0209709_17	UniRef90	UniRef90_A0A2Z4QA17	KID repeat-containing protein	NA
UHGV-0209709_17	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0209709_17	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-0209709_18	UniRef90	UniRef90_A0A856HZ25	Tail fiber domain-containing protein	NA
UHGV-0209709_18	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0209709_18	Structural annotation	TIGR01643	NA	NA
UHGV-0209709_20	Pfam	PF18902	NA	DUF5658
UHGV-0209709_20	Structural annotation	PF18902	NA	NA
UHGV-0209709_23	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0209709_23	UniRef90	UniRef90_A0A252F2M2	NA	NA
UHGV-0209709_23	Pfam	PF19789	NA	DUF6273
UHGV-0209709_23	Structural annotation	PF19789	NA	NA
UHGV-0209709_24	PHROG	phrog_1863	NA	unknown function
UHGV-0209709_24	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-0209709_25	PHROG	phrog_13256	NA	unknown function
UHGV-0209709_25	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0209709_26	PHROG	phrog_23092	NA	unknown function
UHGV-0209709_26	eggNOG-mapper	1226322.HMPREF1545_02839	NA	NA
UHGV-0209709_27	PHROG	phrog_21357	endolysin	lysis
UHGV-0209709_27	UniRef90	UniRef90_UPI001C00DA69	CHAP domain-containing protein	NA
UHGV-0209709_27	eggNOG-mapper	1007096.BAGW01000017_gene816	CHAP domain	NA
UHGV-0209709_27	Pfam	PF05257	CHAP domain	CHAP
UHGV-0209709_27	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0209709_27	Structural annotation	PF06672, TIGR02594, COG4322	NA	NA
UHGV-0209709_28	Structural annotation	PF04545, MF_00674, NF008895, COG1342	NA	NA
UHGV-0209709_29	eggNOG-mapper	742738.HMPREF9460_04058	NA	NA
UHGV-0209709_30	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0209709_30	UniRef90	UniRef90_UPI001D009076	helix-turn-helix domain-containing protein	NA
UHGV-0209709_30	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-0209709_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0209709_30	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0209709_30	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0209709_33	PHROG	phrog_22984	NA	unknown function
UHGV-0209709_34	PHROG	phrog_16490	NA	unknown function
UHGV-0209709_34	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0209709_35	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0209709_36	UniRef90	UniRef90_A0A8F1B662	RNA polymerase sigma factor/Ubiquitin-like protein	NA
UHGV-0209709_36	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0209709_37	KOfam	K14059	int; integrase	NA
UHGV-0209709_37	PHROG	phrog_1	integrase	integration and excision
UHGV-0209709_37	UniRef90	UniRef90_G4L0W3	Tyr recombinase domain-containing protein	NA
UHGV-0209709_37	eggNOG-mapper	693746.OBV_43340	Belongs to the 'phage' integrase family	NA
UHGV-0209709_37	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0209709_37	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0209709_37	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0209709_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0209709_38	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0209709_39	PHROG	phrog_17982	NA	unknown function
UHGV-0209709_39	UniRef90	UniRef90_A0A174ZZ57	NA	NA
UHGV-0209709_39	eggNOG-mapper	720554.Clocl_1541	NA	NA
UHGV-0209709_39	Pfam	PF14020	NA	DUF4236
UHGV-0209709_40	eggNOG-mapper	537013.CLOSTMETH_01698	NA	NA
UHGV-0209709_41	UniRef90	UniRef90_UPI001E54DE4F	helix-turn-helix domain-containing protein	NA
UHGV-0209709_41	eggNOG-mapper	1226322.HMPREF1545_00148	Transcriptional	NA
UHGV-0209709_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0209709_41	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0209709_42	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0209709_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0209709_42	UniRef90	UniRef90_A0A2M7G7B7	HTH cro/C1-type domain-containing protein	NA
UHGV-0209709_42	eggNOG-mapper	1341157.RF007C_15390	Helix-turn-helix XRE-family like proteins	NA
UHGV-0209709_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0209709_42	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0209709_42	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0209709_43	eggNOG-mapper	1235835.C814_03153	NA	NA
UHGV-0209709_43	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0209709_44	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0209709_44	UniRef90	UniRef90_UPI001C01DF91	helix-turn-helix transcriptional regulator	NA
UHGV-0209709_44	eggNOG-mapper	1226322.HMPREF1545_00092	Helix-turn-helix XRE-family like proteins	NA
UHGV-0209709_44	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0209709_44	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0209709_44	Structural annotation	PF01381, NF040522, COG1476	NA	NA
UHGV-0209709_45	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0209709_45	UniRef90	UniRef90_UPI0006877B23	helix-turn-helix domain-containing protein	NA
UHGV-0209709_45	eggNOG-mapper	1007096.BAGW01000033_gene1617	ROK family	NA
UHGV-0209709_45	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0209709_45	COG	COG3355	Predicted transcriptional regulator	NA
UHGV-0209709_45	Structural annotation	PF02295, MF_01819, TIGR04176, COG3355	NA	NA
UHGV-0209709_46	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0209709_46	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0209709_46	UniRef90	UniRef90_UPI00195856D7	AAA family ATPase	NA
UHGV-0209709_46	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0209709_46	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0209709_46	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0209709_46	COG	COG0305	Replicative DNA helicase	NA
UHGV-0209709_46	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0209709_48	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0209709_48	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0209709_48	UniRef90	UniRef90_UPI001BB48231	ParA family protein	NA
UHGV-0209709_48	eggNOG-mapper	693746.OBV_19850	Anion-transporting ATPase	NA
UHGV-0209709_48	Pfam	PF13614	AAA domain	AAA_31
UHGV-0209709_48	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0209709_48	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0209709_49	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0209709_49	PHROG	phrog_27290	NA	unknown function
UHGV-0209709_49	UniRef90	UniRef90_UPI001C029D7C	ParB N-terminal domain-containing protein	NA
UHGV-0209709_49	eggNOG-mapper	742738.HMPREF9460_00856	ParB-like nuclease domain	NA
UHGV-0209709_49	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0209709_49	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0209709_49	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0209709_52	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0209709_52	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0209709_52	UniRef90	UniRef90_UPI001C02B0E9	single-stranded DNA-binding protein	NA
UHGV-0209709_52	eggNOG-mapper	693746.OBV_12860	Single-strand binding protein family	NA
UHGV-0209709_52	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0209709_52	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0209709_52	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0209709_52	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0209709_52	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0209709_54	Structural annotation	PF06657	NA	NA
UHGV-0209709_56	PHROG	phrog_3136	NA	unknown function
UHGV-0209709_56	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0209709_56	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0209709_56	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0209709_56	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0209709_60	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0209709_60	eggNOG-mapper	693746.OBV_19950	NA	NA
UHGV-0209709_60	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0209709_61	UniRef90	UniRef90_UPI001D014F8E	cysteine-rich KTR domain-containing protein	NA
UHGV-0209709_61	eggNOG-mapper	1226322.HMPREF1545_00110	Cysteine-rich KTR	NA
UHGV-0209709_61	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0209709_61	Structural annotation	PF14205	NA	NA
UHGV-0209709_62	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0209709_62	UniRef90	UniRef90_UPI001EDE5545	HNH endonuclease	NA
UHGV-0209709_62	eggNOG-mapper	693746.OBV_19960	HNH endonuclease	NA
UHGV-0209709_62	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0209709_62	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0209709_62	Structural annotation	PF01844, COG1403	NA	NA