UHGV-0210454

Genome information

vOTU vOTU-072010

Genome length 36,796 bps

CDS count 59

Completeness 96.73% (high-quality)

geNomad score 0.9657

Prediction confidence Confident

Genome information
Genome ID	UHGV-0210454
vOTU ID	vOTU-072010
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN11252291_a1_ct136928_vs1@Myoviridae__sp._ctMCF1
BioSample	NA
Country	Ethiopia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.73% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9657
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.47
Jumbo phage	No

Genome content
Genome length	36,796 bps
GC content	45.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	91.04%
Average CDS length	571.07 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0210454_2	PHROG	phrog_1141	tail fiber protein	tail
UHGV-0210454_2	UniRef90	UniRef90_R6WJZ0	NA	NA
UHGV-0210454_2	eggNOG-mapper	1504672.669782887	NA	NA
UHGV-0210454_2	Pfam	PF14301	NA	DUF4376
UHGV-0210454_2	Structural annotation	PF14301	NA	NA
UHGV-0210454_3	PHROG	phrog_13336	NA	unknown function
UHGV-0210454_3	eggNOG-mapper	2754.EH55_13265	NA	NA
UHGV-0210454_4	eggNOG-mapper	568816.Acin_1905	NA	NA
UHGV-0210454_4	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0210454_5	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0210454_5	UniRef90	UniRef90_UPI0015588CAB	phage tail family protein	NA
UHGV-0210454_5	eggNOG-mapper	568816.Acin_1906	Phage tail protein	NA
UHGV-0210454_5	Structural annotation	PF20753, PF19512, TIGR01633, COG4722	NA	NA
UHGV-0210454_6	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0210454_6	UniRef90	UniRef90_R6WQ18	Tape measure domain-containing protein	NA
UHGV-0210454_6	eggNOG-mapper	1273103.NM10_06751	tape measure	NA
UHGV-0210454_6	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0210454_6	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0210454_6	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0210454_6	Structural annotation	PF20155, MF_04138, TIGR01760, COG3941	NA	NA
UHGV-0210454_8	Structural annotation	PF11836	NA	NA
UHGV-0210454_9	PHROG	phrog_1407	major tail protein	tail
UHGV-0210454_9	UniRef90	UniRef90_A0A380NJ51	Predicted secreted protein	NA
UHGV-0210454_9	eggNOG-mapper	1000569.HMPREF1040_0191	Phage tail tube protein	NA
UHGV-0210454_9	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0210454_9	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0210454_9	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0210454_10	UniRef90	UniRef90_R6WK09	Conserved domain protein	NA
UHGV-0210454_10	eggNOG-mapper	1111454.HMPREF1250_1050	NA	NA
UHGV-0210454_10	Structural annotation	PF08873, COG5003	NA	NA
UHGV-0210454_11	eggNOG-mapper	1273103.NM10_06776	NA	NA
UHGV-0210454_12	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0210454_12	UniRef90	UniRef90_F9MMJ2	Phage protein, HK97 gp10 family	NA
UHGV-0210454_12	eggNOG-mapper	568816.Acin_1234	NA	NA
UHGV-0210454_12	Structural annotation	TIGR01725	NA	NA
UHGV-0210454_13	PHROG	phrog_422	major head protein	head and packaging
UHGV-0210454_13	UniRef90	UniRef90_R6WWZ7	Gp7	NA
UHGV-0210454_13	eggNOG-mapper	1352230.S6AVV3_9CAUD	NA	NA
UHGV-0210454_13	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0210454_13	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0210454_14	eggNOG-mapper	1280706.AUJE01000003_gene2260	NA	NA
UHGV-0210454_14	Structural annotation	PF06810	NA	NA
UHGV-0210454_15	eggNOG-mapper	1280692.AUJL01000028_gene1937	NA	NA
UHGV-0210454_16	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0210454_16	UniRef90	UniRef90_R6AE12	TNT domain-containing protein	NA
UHGV-0210454_16	eggNOG-mapper	1232428.CAVO010000021_gene805	NA	NA
UHGV-0210454_16	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0210454_17	PHROG	phrog_145	portal protein	head and packaging
UHGV-0210454_17	UniRef90	UniRef90_R6WQ48	Conserved domain protein	NA
UHGV-0210454_17	eggNOG-mapper	1232428.CAVO010000021_gene806	NA	NA
UHGV-0210454_17	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0210454_18	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0210454_18	UniRef90	UniRef90_UPI001F2335B1	phage terminase large subunit	NA
UHGV-0210454_18	eggNOG-mapper	1499683.CCFF01000014_gene3915	TIGRFAM Phage	NA
UHGV-0210454_18	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0210454_18	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0210454_18	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0210454_18	COG	COG5410	NA	NA
UHGV-0210454_18	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0210454_20	UniRef90	UniRef90_R6X5I6	PhageMetallopep domain-containing protein	NA
UHGV-0210454_20	eggNOG-mapper	926561.KB900624_gene2638	NA	NA
UHGV-0210454_20	Pfam	PF18894	Putative phage metallopeptidase	PhageMetallopep
UHGV-0210454_20	Structural annotation	PF18894, COG4900	NA	NA
UHGV-0210454_21	eggNOG-mapper	568816.Acin_1817	NA	NA
UHGV-0210454_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0210454_23	UniRef90	UniRef90_R6WQ64	Sigma-70 region 4 domain protein	NA
UHGV-0210454_23	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0210454_23	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0210454_23	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0210454_26	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0210454_26	UniRef90	UniRef90_UPI0018C4B0C5	NA	NA
UHGV-0210454_26	eggNOG-mapper	1511.CLOST_1536	NA	NA
UHGV-0210454_26	Pfam	PF06356	NA	DUF1064
UHGV-0210454_26	Structural annotation	PF06356	NA	NA
UHGV-0210454_28	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0210454_28	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0210454_28	UniRef90	UniRef90_R6WK64	Single-stranded DNA-binding protein	NA
UHGV-0210454_28	eggNOG-mapper	1262914.BN533_00181	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0210454_28	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0210454_28	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0210454_28	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0210454_28	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0210454_28	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0210454_32	PHROG	phrog_236	nucleotide kinase	other
UHGV-0210454_32	UniRef90	UniRef90_A0A6J7WC16	SaV-like	NA
UHGV-0210454_32	eggNOG-mapper	1111454.HMPREF1250_1038	NA	NA
UHGV-0210454_32	Pfam	PF11753	NA	DUF3310
UHGV-0210454_34	PHROG	phrog_1454	NA	unknown function
UHGV-0210454_34	eggNOG-mapper	1227360.C176_12478	NA	NA
UHGV-0210454_38	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0210454_38	eggNOG-mapper	1125712.HMPREF1316_1499	NA	NA
UHGV-0210454_39	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0210454_39	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0210454_39	UniRef90	UniRef90_R6WX70	AAA domain-containing protein	NA
UHGV-0210454_39	eggNOG-mapper	796942.HMPREF9623_00441	NA	NA
UHGV-0210454_39	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0210454_39	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0210454_39	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0210454_39	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0210454_40	PHROG	phrog_4880	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0210454_40	UniRef90	UniRef90_R6WQA7	DnaD and phage-associated domain protein	NA
UHGV-0210454_40	eggNOG-mapper	272562.CA_C1934	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0210454_40	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0210454_40	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0210454_40	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0210454_41	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0210454_41	UniRef90	UniRef90_A0A2Z4Q9W9	NinB	NA
UHGV-0210454_41	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-0210454_41	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0210454_42	PHROG	phrog_7566	NA	unknown function
UHGV-0210454_42	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0210454_43	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0210454_43	UniRef90	UniRef90_UPI0015943421	ERF family protein	NA
UHGV-0210454_43	eggNOG-mapper	1298920.KI911353_gene4870	ERF superfamily	NA
UHGV-0210454_43	Pfam	PF04404	ERF superfamily	ERF
UHGV-0210454_43	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0210454_44	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0210454_44	UniRef90	UniRef90_R6WX74	Siphovirus family protein	NA
UHGV-0210454_44	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0210454_44	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0210454_44	Structural annotation	PF05565	NA	NA
UHGV-0210454_46	UniRef90	UniRef90_R6XZA3	LysM domain protein	NA
UHGV-0210454_46	Structural annotation	MF_02014, NF010723	NA	NA
UHGV-0210454_47	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0210454_48	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0210454_48	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0210454_48	UniRef90	UniRef90_D9SWH3	Prophage antirepressor	NA
UHGV-0210454_48	eggNOG-mapper	573061.Clocel_3580	Phage antirepressor protein	NA
UHGV-0210454_48	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0210454_48	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0210454_48	COG	COG3617	Prophage antirepressor	NA
UHGV-0210454_48	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0210454_49	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0210454_49	UniRef90	UniRef90_A0A4R1PX28	DNA-binding XRE family transcriptional regulator	NA
UHGV-0210454_49	eggNOG-mapper	411469.EUBHAL_01993	Helix-turn-helix XRE-family like proteins	NA
UHGV-0210454_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0210454_49	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0210454_49	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0210454_50	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0210454_50	UniRef90	UniRef90_A0A173S2A0	HTH cro/C1-type domain-containing protein	NA
UHGV-0210454_50	eggNOG-mapper	411469.EUBHAL_01994	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0210454_50	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0210454_50	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0210454_51	PHROG	phrog_19315	NA	unknown function
UHGV-0210454_51	UniRef90	UniRef90_A0A4P6BJ23	Peptidase_M78 domain-containing protein	NA
UHGV-0210454_51	eggNOG-mapper	1280706.AUJE01000010_gene629	NA	NA
UHGV-0210454_51	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0210454_51	Pfam	PF12773	Double zinc ribbon	DZR
UHGV-0210454_51	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0210454_51	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0210454_52	PHROG	phrog_17771	NA	unknown function
UHGV-0210454_52	UniRef90	UniRef90_E4Q765	Putative Lj965 prophage protein	NA
UHGV-0210454_52	eggNOG-mapper	883156.HMPREF9282_00199	NA	NA
UHGV-0210454_53	PHROG	phrog_5059	NA	unknown function
UHGV-0210454_53	UniRef90	UniRef90_UPI0013E041FA	NA	NA
UHGV-0210454_53	eggNOG-mapper	883156.HMPREF9282_00200	NA	NA
UHGV-0210454_53	Pfam	PF08861	NA	DUF1828
UHGV-0210454_53	Pfam	PF08862	NA	DUF1829
UHGV-0210454_53	Structural annotation	PF08862, PF08861, MF_00722, COG3372	NA	NA
UHGV-0210454_54	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0210454_54	UniRef90	UniRef90_R6XZB6	Putative abortive infection bacteriophage resistance related protein	NA
UHGV-0210454_54	eggNOG-mapper	927704.SELR_16790	Abi-like protein	NA
UHGV-0210454_54	PADLOC	AbiD	AbiD	Abi
UHGV-0210454_54	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0210454_54	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0210454_54	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0210454_56	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0210454_56	UniRef90	UniRef90_R6XZC0	Possible transcription regulator	NA
UHGV-0210454_56	eggNOG-mapper	864563.HMPREF9166_0578	IrrE N-terminal-like domain	NA
UHGV-0210454_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0210454_56	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0210454_56	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0210454_56	Structural annotation	PF06114, PF01381, MF_00584, NF038139, COG2856, COG1476	NA	NA
UHGV-0210454_58	KOfam	K14059	int; integrase	NA
UHGV-0210454_58	PHROG	phrog_1	integrase	integration and excision
UHGV-0210454_58	UniRef90	UniRef90_R6J9I2	Integrase family protein	NA
UHGV-0210454_58	eggNOG-mapper	1262914.BN533_01960	Belongs to the 'phage' integrase family	NA
UHGV-0210454_58	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0210454_58	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0210454_58	Structural annotation	PF00589, PF13102, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0210454_59	eggNOG-mapper	1262914.BN533_01961	Product inferred by homology to UniProt	NA