UHGV-0210549

Genome information

Genome length 28,939 bps

CDS count 47

Completeness 88.04% (medium-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-0210549
vOTU ID	vOTU-021000
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SRS011134_a1_ct156717_vs1@Myoviridae__sp._ct5641
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.04% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.64
Jumbo phage	No

Genome content
Genome length	28,939 bps
GC content	50.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	88.73%
Average CDS length	550.60 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0210549_1	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0210549_1	eggNOG-mapper	755731.Clo1100_1616	Phage replisome organizer	NA
UHGV-0210549_1	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0210549_4	eggNOG-mapper	657322.FPR_23130	NA	NA
UHGV-0210549_5	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0210549_5	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0210549_5	UniRef90	UniRef90_UPI00131A3D1F	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0210549_5	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0210549_7	Structural annotation	TIGR04381	NA	NA
UHGV-0210549_9	PHROG	phrog_3878	NA	unknown function
UHGV-0210549_9	Structural annotation	PF18895	NA	NA
UHGV-0210549_11	UniRef90	UniRef90_A0A8D9PDQ6	Restriction alleviation protein	NA
UHGV-0210549_11	Structural annotation	TIGR03655	NA	NA
UHGV-0210549_16	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0210549_16	UniRef90	UniRef90_UPI001D0837DD	NA	NA
UHGV-0210549_16	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-0210549_16	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0210549_18	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0210549_18	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-0210549_18	eggNOG-mapper	1329516.JPST01000017_gene431	Phage terminase, small subunit	NA
UHGV-0210549_18	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0210549_18	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0210549_18	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0210549_19	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0210549_19	UniRef90	UniRef90_A0A2V2GQ67	Terminase	NA
UHGV-0210549_19	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0210549_19	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0210549_19	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0210549_19	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0210549_19	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0210549_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-0210549_20	UniRef90	UniRef90_A0A2V2GQD5	Phage portal protein	NA
UHGV-0210549_20	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-0210549_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0210549_20	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0210549_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0210549_20	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0210549_21	KOfam	K06904	NA	NA
UHGV-0210549_21	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0210549_21	UniRef90	UniRef90_A0A2V2GNJ3	HK97 family phage prohead protease	NA
UHGV-0210549_21	eggNOG-mapper	1226322.HMPREF1545_00115	Phage prohead protease, HK97 family	NA
UHGV-0210549_21	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0210549_21	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0210549_21	COG	COG3740	Phage head maturation protease	NA
UHGV-0210549_21	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0210549_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-0210549_22	UniRef90	UniRef90_A0A2V2GRA2	Phage major capsid protein	NA
UHGV-0210549_22	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-0210549_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0210549_22	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0210549_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0210549_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0210549_22	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0210549_23	PHROG	phrog_2550	NA	unknown function
UHGV-0210549_23	UniRef90	UniRef90_UPI001E35E63D	phage head-tail connector protein	NA
UHGV-0210549_23	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0210549_23	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0210549_24	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0210549_24	UniRef90	UniRef90_A0A2V2GSS5	Phage head-tail adapter protein	NA
UHGV-0210549_24	eggNOG-mapper	1226322.HMPREF1545_00118	NA	NA
UHGV-0210549_24	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0210549_24	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0210549_25	UniRef90	UniRef90_UPI00073E355A	HK97 gp10 family phage protein	NA
UHGV-0210549_25	eggNOG-mapper	1226322.HMPREF1545_00119	NA	NA
UHGV-0210549_25	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0210549_25	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0210549_26	PHROG	phrog_78	tail terminator	connector
UHGV-0210549_26	UniRef90	UniRef90_U2SBX3	HTH merR-type domain-containing protein	NA
UHGV-0210549_26	eggNOG-mapper	1226322.HMPREF1545_00120	NA	NA
UHGV-0210549_26	Structural annotation	PF20765	NA	NA
UHGV-0210549_27	PHROG	phrog_88	major tail protein	tail
UHGV-0210549_27	UniRef90	UniRef90_A0A2V2GLL2	Phage tail protein	NA
UHGV-0210549_27	eggNOG-mapper	1226322.HMPREF1545_00121	phage major tail protein, phi13 family	NA
UHGV-0210549_27	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0210549_27	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0210549_28	PHROG	phrog_709	NA	unknown function
UHGV-0210549_28	eggNOG-mapper	411471.SUBVAR_05858	NA	NA
UHGV-0210549_28	Structural annotation	PF19591	NA	NA
UHGV-0210549_29	PHROG	phrog_3033	NA	unknown function
UHGV-0210549_29	eggNOG-mapper	1123263.AUKY01000027_gene838	NA	NA
UHGV-0210549_30	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0210549_30	UniRef90	UniRef90_A0A2V2GLB5	Phage tail tape measure protein	NA
UHGV-0210549_30	eggNOG-mapper	1033743.CAES01000020_gene3130	Phage-related minor tail protein	NA
UHGV-0210549_30	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0210549_30	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0210549_30	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0210549_30	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0210549_31	PHROG	phrog_20385	minor tail protein	tail
UHGV-0210549_31	UniRef90	UniRef90_UPI001C013719	phage baseplate protein	NA
UHGV-0210549_31	eggNOG-mapper	411471.SUBVAR_05861	NA	NA
UHGV-0210549_31	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0210549_32	PHROG	phrog_7064	tail protein	tail
UHGV-0210549_32	eggNOG-mapper	665956.HMPREF1032_00106	NA	NA
UHGV-0210549_32	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0210549_32	Structural annotation	PF14594, TIGR03361, COG4379	NA	NA
UHGV-0210549_33	PHROG	phrog_5811	NA	unknown function
UHGV-0210549_33	eggNOG-mapper	665956.HMPREF1032_00105	NA	NA
UHGV-0210549_33	Structural annotation	PF20747, TIGR03353	NA	NA
UHGV-0210549_34	PHROG	phrog_15594	NA	unknown function
UHGV-0210549_34	eggNOG-mapper	1118055.CAGU01000013_gene763	NA	NA
UHGV-0210549_34	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-0210549_35	PHROG	phrog_31538	NA	unknown function
UHGV-0210549_36	PHROG	phrog_13589	NA	unknown function
UHGV-0210549_36	eggNOG-mapper	428125.CLOLEP_01434	NA	NA
UHGV-0210549_38	KOfam	K10461	KLHL24_35; kelch-like protein 24/35	NA
UHGV-0210549_38	PHROG	phrog_16120	virion structural protein	head and packaging
UHGV-0210549_38	Pfam	PF13964	Kelch motif	Kelch_6
UHGV-0210549_38	Pfam	PF07646	Kelch motif	Kelch_2
UHGV-0210549_38	Pfam	PF13418	Galactose oxidase, central domain	Kelch_4
UHGV-0210549_38	Structural annotation	PF07250, MF_01195, TIGR03548, COG3055	NA	NA
UHGV-0210549_39	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0210549_39	Structural annotation	PF21722	NA	NA
UHGV-0210549_42	PHROG	phrog_27545	NA	unknown function
UHGV-0210549_42	UniRef90	UniRef90_A0A2V2GQB6	Chitin-binding type-3 domain-containing protein	NA
UHGV-0210549_42	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-0210549_42	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0210549_43	PHROG	phrog_937	hemolysin	other
UHGV-0210549_43	eggNOG-mapper	1235835.C814_01939	NA	NA
UHGV-0210549_44	eggNOG-mapper	1347392.CCEZ01000043_gene405	NA	NA
UHGV-0210549_45	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0210549_45	PHROG	phrog_435	endolysin	lysis
UHGV-0210549_45	UniRef90	UniRef90_A0A2V2GRI9	MurNAc-LAA domain-containing protein	NA
UHGV-0210549_45	eggNOG-mapper	994573.T472_0210960	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0210549_45	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0210549_45	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0210549_45	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA