UHGV-0210646

Genome information

Genome length 26,058 bps

CDS count 44

Completeness 91.71% (high-quality)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-0210646
vOTU ID	vOTU-071288
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN10290178_a1_ct5941_vs1@linear@Siphoviridae__sp._ctqCR1
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.71% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.25
Jumbo phage	No

Genome content
Genome length	26,058 bps
GC content	47.60%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	90.85%
Average CDS length	541.57 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0210646_1	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0210646_1	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-0210646_1	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-0210646_2	Structural annotation	PF11344	NA	NA
UHGV-0210646_3	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0210646_3	UniRef90	UniRef90_A0A396KGT7	NA	NA
UHGV-0210646_3	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0210646_3	Pfam	PF14359	NA	DUF4406
UHGV-0210646_3	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0210646_4	PHROG	phrog_1793	head scaffolding protein	head and packaging
UHGV-0210646_4	UniRef90	UniRef90_A0A412EZF6	NA	NA
UHGV-0210646_4	eggNOG-mapper	1408304.JAHA01000007_gene1323	NA	NA
UHGV-0210646_4	Pfam	PF14265	NA	DUF4355
UHGV-0210646_4	Structural annotation	PF14265	NA	NA
UHGV-0210646_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0210646_5	UniRef90	UniRef90_A0A844E6Z2	Phage major capsid protein	NA
UHGV-0210646_5	eggNOG-mapper	205876.Q855V6_9CAUD	peptidase activity	NA
UHGV-0210646_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0210646_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0210646_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0210646_7	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0210646_7	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0210646_7	Pfam	PF09355	NA	Phage_Gp19
UHGV-0210646_7	Structural annotation	PF09355	NA	NA
UHGV-0210646_8	PHROG	phrog_501	head closure Hc1	connector
UHGV-0210646_8	eggNOG-mapper	665950.HMPREF1025_02528	NA	NA
UHGV-0210646_8	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0210646_9	PHROG	phrog_387	neck protein	connector
UHGV-0210646_9	UniRef90	UniRef90_A0A380KNT4	NA	NA
UHGV-0210646_9	eggNOG-mapper	1423775.BAMN01000011_gene600	NA	NA
UHGV-0210646_10	PHROG	phrog_123	tail terminator	connector
UHGV-0210646_10	eggNOG-mapper	1280698.AUJS01000007_gene1043	NA	NA
UHGV-0210646_10	Structural annotation	PF06141	NA	NA
UHGV-0210646_11	PHROG	phrog_117	major tail protein	tail
UHGV-0210646_11	UniRef90	UniRef90_A0A844E2C0	Phage tail protein	NA
UHGV-0210646_11	eggNOG-mapper	1280698.AUJS01000007_gene1044	domain, Protein	NA
UHGV-0210646_11	COG	COG5492	NA	NA
UHGV-0210646_11	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0210646_12	PHROG	phrog_1526	NA	unknown function
UHGV-0210646_12	eggNOG-mapper	879308.HMPREF9130_1240	NA	NA
UHGV-0210646_13	PHROG	phrog_1633	NA	unknown function
UHGV-0210646_13	UniRef90	UniRef90_A0A4U9XLC7	NA	NA
UHGV-0210646_13	eggNOG-mapper	873448.STRPO_0293	NA	NA
UHGV-0210646_13	Pfam	PF17318	NA	DUF5361
UHGV-0210646_13	Structural annotation	PF17318	NA	NA
UHGV-0210646_14	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0210646_14	eggNOG-mapper	12390.Q77MU4_9CAUD	peptidoglycan catabolic process	NA
UHGV-0210646_14	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0210646_15	PHROG	phrog_20385	minor tail protein	tail
UHGV-0210646_15	eggNOG-mapper	397287.C807_03967	NA	NA
UHGV-0210646_15	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0210646_16	PHROG	phrog_7064	tail protein	tail
UHGV-0210646_16	eggNOG-mapper	1235800.C819_04023	NA	NA
UHGV-0210646_16	Structural annotation	PF14594, TIGR03361, COG4379	NA	NA
UHGV-0210646_17	PHROG	phrog_5811	NA	unknown function
UHGV-0210646_17	eggNOG-mapper	1235793.C809_04315	Glycine rich protein	NA
UHGV-0210646_18	PHROG	phrog_1084	NA	unknown function
UHGV-0210646_18	eggNOG-mapper	910314.HMPREF9220_1078	NA	NA
UHGV-0210646_18	Structural annotation	PF16407, NF032891, COG5456	NA	NA
UHGV-0210646_20	PHROG	phrog_13589	NA	unknown function
UHGV-0210646_20	eggNOG-mapper	411460.RUMTOR_01324	NA	NA
UHGV-0210646_21	eggNOG-mapper	428125.CLOLEP_01435	NA	NA
UHGV-0210646_22	PHROG	phrog_937	hemolysin	other
UHGV-0210646_22	UniRef90	UniRef90_R5GGW2	Phosphoglucosamine mutase	NA
UHGV-0210646_22	eggNOG-mapper	742740.HMPREF9474_03172	NA	NA
UHGV-0210646_23	PHROG	phrog_1129	holin	lysis
UHGV-0210646_23	UniRef90	UniRef90_UPI001C0F499E	phage holin family protein	NA
UHGV-0210646_23	eggNOG-mapper	702450.CUW_0551	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0210646_23	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0210646_23	Structural annotation	PF06946	NA	NA
UHGV-0210646_24	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0210646_24	PHROG	phrog_435	endolysin	lysis
UHGV-0210646_24	UniRef90	UniRef90_UPI00164BDABC	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0210646_24	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0210646_25	KOfam	K14059	int; integrase	NA
UHGV-0210646_25	PHROG	phrog_1	integrase	integration and excision
UHGV-0210646_25	UniRef90	UniRef90_UPI00101EF3B7	tyrosine-type recombinase/integrase	NA
UHGV-0210646_25	eggNOG-mapper	1235792.C808_04693	Belongs to the 'phage' integrase family	NA
UHGV-0210646_25	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0210646_25	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0210646_26	PHROG	phrog_7115	NA	unknown function
UHGV-0210646_26	UniRef90	UniRef90_A0A396KU40	PH domain-containing protein	NA
UHGV-0210646_26	eggNOG-mapper	1280698.AUJS01000007_gene1000	Bacterial PH domain	NA
UHGV-0210646_26	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-0210646_27	PHROG	phrog_87	metallo-protease	other
UHGV-0210646_27	UniRef90	UniRef90_UPI001D02322C	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0210646_27	eggNOG-mapper	1235792.C808_05259	Zn peptidase	NA
UHGV-0210646_27	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0210646_27	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0210646_27	Structural annotation	PF06114, COG3800	NA	NA
UHGV-0210646_28	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0210646_28	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0210646_28	UniRef90	UniRef90_A0A3R6ILK5	XRE family transcriptional regulator	NA
UHGV-0210646_28	eggNOG-mapper	1256908.HMPREF0373_00219	sequence-specific DNA binding	NA
UHGV-0210646_28	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0210646_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0210646_28	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0210646_29	UniRef90	UniRef90_A0A3D5L8I7	DNA-binding protein	NA
UHGV-0210646_29	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0210646_29	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0210646_30	UniRef90	UniRef90_A0A416P573	XRE family transcriptional regulator	NA
UHGV-0210646_30	eggNOG-mapper	1235792.C808_05261	NA	NA
UHGV-0210646_30	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0210646_31	UniRef90	UniRef90_A0A3A9F894	DNA-binding protein	NA
UHGV-0210646_36	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0210646_36	UniRef90	UniRef90_A0A1I5LZL1	Relaxase/Mobilisation nuclease domain-containing protein	NA
UHGV-0210646_36	eggNOG-mapper	1196322.A370_05744	NA	NA
UHGV-0210646_36	Structural annotation	PF21578	NA	NA
UHGV-0210646_37	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0210646_37	UniRef90	UniRef90_F3AAS5	RNase H type-1 domain-containing protein	NA
UHGV-0210646_37	eggNOG-mapper	573065.Astex_1568	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0210646_37	Pfam	PF00075	RNase H	RNase_H
UHGV-0210646_37	COG	COG0328	Ribonuclease HI	NA
UHGV-0210646_37	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0210646_39	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0210646_39	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0210646_39	UniRef90	UniRef90_A0A7G9G0M5	Single-stranded DNA-binding protein	NA
UHGV-0210646_39	eggNOG-mapper	411459.RUMOBE_00993	NA	NA
UHGV-0210646_39	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0210646_39	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0210646_39	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0210646_39	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0210646_39	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0210646_40	eggNOG-mapper	411468.CLOSCI_00555	NA	NA
UHGV-0210646_41	PHROG	phrog_7566	NA	unknown function
UHGV-0210646_41	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-0210646_42	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-0210646_43	PHROG	phrog_8470	NA	unknown function
UHGV-0210646_43	UniRef90	UniRef90_UPI001D086F83	PcfJ domain-containing protein	NA
UHGV-0210646_43	eggNOG-mapper	97139.C824_00039	PcfJ-like protein	NA
UHGV-0210646_43	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0210646_43	Structural annotation	PF14284	NA	NA
UHGV-0210646_44	PHROG	phrog_15077	NA	unknown function
UHGV-0210646_44	UniRef90	UniRef90_UPI001D0741A0	NA	NA
UHGV-0210646_44	eggNOG-mapper	97139.C824_05986	NA	NA