UHGV-0210986

Genome information

Genome length 41,309 bps

CDS count 56

Completeness 98.72% (high-quality)

geNomad score 0.9751

Prediction confidence Confident

Genome information
Genome ID	UHGV-0210986
vOTU ID	vOTU-008755
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SRS077454_a1_ct19626_vs1@Siphoviridae__sp._ctkRf1
BioSample	SAMN00087621
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.72% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	26
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9751
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.61
Jumbo phage	No

Genome content
Genome length	41,309 bps
GC content	60.75%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	91.80%
Average CDS length	679.18 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0210986_1	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0210986_1	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-0210986_1	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-0210986_2	PHROG	phrog_6332	NA	unknown function
UHGV-0210986_2	UniRef90	UniRef90_E2ZIH6	Cys_rich_CPCC domain-containing protein	NA
UHGV-0210986_2	eggNOG-mapper	748224.HMPREF9436_01470	Cysteine-rich CPCC	NA
UHGV-0210986_2	Pfam	PF14206	Cysteine-rich CPCC	Cys_rich_CPCC
UHGV-0210986_2	Structural annotation	PF14206	NA	NA
UHGV-0210986_3	PHROG	phrog_3675	NA	unknown function
UHGV-0210986_3	UniRef90	UniRef90_A0A0E4H649	YjcQ protein	NA
UHGV-0210986_3	eggNOG-mapper	1120978.KB894082_gene1061	YjcQ protein	NA
UHGV-0210986_3	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0210986_3	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0210986_4	KOfam	K14059	int; integrase	NA
UHGV-0210986_4	PHROG	phrog_1	integrase	integration and excision
UHGV-0210986_4	UniRef90	UniRef90_A0A367GI93	Tyr recombinase domain-containing protein	NA
UHGV-0210986_4	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0210986_4	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0210986_4	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0210986_4	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0210986_4	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0210986_5	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0210986_5	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0210986_5	UniRef90	UniRef90_UPI001D0E173A	helix-turn-helix domain-containing protein	NA
UHGV-0210986_5	eggNOG-mapper	1262914.BN533_00809	Peptidase S24-like	NA
UHGV-0210986_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0210986_5	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0210986_5	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0210986_5	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974, COG1476	NA	NA
UHGV-0210986_6	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0210986_6	UniRef90	UniRef90_B0PAK0	DNA-binding helix-turn-helix protein	NA
UHGV-0210986_6	eggNOG-mapper	445972.ANACOL_01800	NA	NA
UHGV-0210986_6	Pfam	PF05339	NA	DUF739
UHGV-0210986_6	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0210986_6	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0210986_8	PHROG	phrog_37789	NA	unknown function
UHGV-0210986_9	Structural annotation	PF12270, NF040944	NA	NA
UHGV-0210986_10	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0210986_10	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0210986_10	UniRef90	UniRef90_A0A3E2XCI4	Type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0210986_10	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0210986_10	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0210986_10	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0210986_13	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0210986_13	UniRef90	UniRef90_A0A316RZP5	NA	NA
UHGV-0210986_13	eggNOG-mapper	1408437.JNJN01000081_gene1518	NA	NA
UHGV-0210986_13	Pfam	PF10926	NA	DUF2800
UHGV-0210986_13	COG	COG2887	RecB family exonuclease	NA
UHGV-0210986_13	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0210986_14	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0210986_14	UniRef90	UniRef90_A0A3E2XCH4	NA	NA
UHGV-0210986_14	eggNOG-mapper	180332.JTGN01000004_gene2303	NA	NA
UHGV-0210986_14	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0210986_14	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0210986_15	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0210986_15	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0210986_15	UniRef90	UniRef90_A0A3E2XCZ3	POLAc domain-containing protein	NA
UHGV-0210986_15	eggNOG-mapper	693746.OBV_43170	DNA polymerase	NA
UHGV-0210986_15	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0210986_15	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0210986_15	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0210986_17	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0210986_18	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0210986_18	UniRef90	UniRef90_A0A3E2XCJ5	Virulence-associated protein E	NA
UHGV-0210986_18	eggNOG-mapper	1120971.AUCA01000043_gene1172	Virulence-associated protein E	NA
UHGV-0210986_18	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0210986_18	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0210986_18	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0210986_20	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0210986_20	UniRef90	UniRef90_UPI001A9B532E	VRR-NUC domain-containing protein	NA
UHGV-0210986_20	eggNOG-mapper	411473.RUMCAL_00894	VRR_NUC	NA
UHGV-0210986_20	Structural annotation	PF01870, COG1637	NA	NA
UHGV-0210986_21	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0210986_21	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0210986_21	UniRef90	UniRef90_A0A3E2XB72	DEAD/DEAH box helicase	NA
UHGV-0210986_21	eggNOG-mapper	693746.OBV_43130	snf2 family	NA
UHGV-0210986_21	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0210986_21	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0210986_21	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0210986_21	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0210986_22	Structural annotation	PF07374	NA	NA
UHGV-0210986_23	PHROG	phrog_8680	NA	unknown function
UHGV-0210986_23	UniRef90	UniRef90_A0A3R6D7I3	NA	NA
UHGV-0210986_23	eggNOG-mapper	1229517.AMFD01000023_gene1324	NA	NA
UHGV-0210986_23	Pfam	PF14386	NA	DUF4417
UHGV-0210986_23	Structural annotation	PF14386, NF041059	NA	NA
UHGV-0210986_24	Structural annotation	PF03496, MF_04142, NF040688	NA	NA
UHGV-0210986_28	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0210986_28	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0210986_28	UniRef90	UniRef90_A0A3E2XCB9	Methyltransferase	NA
UHGV-0210986_28	eggNOG-mapper	12402.Q708N6_9CAUD	N-methyltransferase activity	NA
UHGV-0210986_28	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0210986_28	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0210986_28	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0210986_28	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0210986_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0210986_29	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0210986_29	UniRef90	UniRef90_A0A3E2XCJ2	PBSX family phage terminase large subunit	NA
UHGV-0210986_29	eggNOG-mapper	665956.HMPREF1032_02957	Phage terminase, large subunit, PBSX family	NA
UHGV-0210986_29	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0210986_29	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0210986_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0210986_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0210986_29	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0210986_30	PHROG	phrog_533	portal protein	head and packaging
UHGV-0210986_30	UniRef90	UniRef90_A0A3E2XD02	Phage portal protein	NA
UHGV-0210986_30	eggNOG-mapper	1032362.F6K8Q7_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0210986_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0210986_30	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0210986_32	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0210986_32	UniRef90	UniRef90_UPI001F16FD58	phage minor capsid protein	NA
UHGV-0210986_32	eggNOG-mapper	663278.Ethha_0499	NA	NA
UHGV-0210986_32	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0210986_32	COG	COG2369	NA	NA
UHGV-0210986_32	Structural annotation	PF06152	NA	NA
UHGV-0210986_33	eggNOG-mapper	1235835.C814_03388	NA	NA
UHGV-0210986_40	eggNOG-mapper	1408437.JNJN01000040_gene204	NA	NA
UHGV-0210986_40	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA
UHGV-0210986_41	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0210986_41	UniRef90	UniRef90_UPI00033ED4BB	phage scaffolding protein	NA
UHGV-0210986_41	eggNOG-mapper	748224.HMPREF9436_03336	Phage minor structural protein GP20	NA
UHGV-0210986_41	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0210986_41	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0210986_42	PHROG	phrog_247	major head protein	head and packaging
UHGV-0210986_42	UniRef90	UniRef90_A0A352IHQ9	Coat protein	NA
UHGV-0210986_42	eggNOG-mapper	33035.JPJF01000106_gene3132	NA	NA
UHGV-0210986_42	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0210986_44	Structural annotation	PF20536	NA	NA
UHGV-0210986_45	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0210986_45	UniRef90	UniRef90_A0A3C0QTS8	Capsid protein	NA
UHGV-0210986_45	eggNOG-mapper	641112.ACOK01000073_gene2898	Minor capsid protein	NA
UHGV-0210986_45	Structural annotation	PF11114	NA	NA
UHGV-0210986_46	PHROG	phrog_3266	tail completion	connector
UHGV-0210986_46	UniRef90	UniRef90_UPI0010640775	chloramphenicol resistance protein	NA
UHGV-0210986_46	eggNOG-mapper	632245.CLP_1653	NA	NA
UHGV-0210986_46	Structural annotation	PF12691	NA	NA
UHGV-0210986_47	PHROG	phrog_820	major tail protein	tail
UHGV-0210986_47	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-0210986_47	eggNOG-mapper	748224.HMPREF9436_03330	NA	NA
UHGV-0210986_47	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0210986_48	PHROG	phrog_4450	NA	unknown function
UHGV-0210986_48	Pfam	PF20378	NA	DUF6673
UHGV-0210986_48	Structural annotation	PF20378	NA	NA
UHGV-0210986_49	PHROG	phrog_706	NA	unknown function
UHGV-0210986_49	UniRef90	UniRef90_E2ZNP9	Bacteriophage Gp15 protein	NA
UHGV-0210986_49	eggNOG-mapper	748224.HMPREF9436_03328	Bacteriophage Gp15 protein	NA
UHGV-0210986_49	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0210986_49	Structural annotation	PF06854	NA	NA
UHGV-0210986_50	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0210986_50	UniRef90	UniRef90_E2ZNP7	Phage tail tape measure protein, TP901 family	NA
UHGV-0210986_50	eggNOG-mapper	748224.HMPREF9436_03326	Phage tail tape measure protein, TP901 family	NA
UHGV-0210986_50	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0210986_50	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0210986_50	COG	COG5283	Phage-related tail protein	NA
UHGV-0210986_50	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0210986_51	PHROG	phrog_36410	NA	unknown function
UHGV-0210986_51	UniRef90	UniRef90_UPI00130E98E0	phage tail family protein	NA
UHGV-0210986_51	eggNOG-mapper	748224.HMPREF9436_03325	Phage tail protein	NA
UHGV-0210986_51	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0210986_52	PHROG	phrog_538	minor tail protein	tail
UHGV-0210986_52	UniRef90	UniRef90_UPI001899858F	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0210986_52	eggNOG-mapper	748224.HMPREF9436_03324	NA	NA
UHGV-0210986_52	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0210986_52	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0210986_53	PHROG	phrog_9534	head protein	head and packaging
UHGV-0210986_53	eggNOG-mapper	748224.HMPREF9436_03323	COG NOG18825 non supervised orthologous group	NA
UHGV-0210986_53	Structural annotation	PF21567	NA	NA
UHGV-0210986_54	PHROG	phrog_2310	NA	unknown function
UHGV-0210986_55	KOfam	K13884	MARCO; macrophage receptor with collagenous structure	NA
UHGV-0210986_55	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0210986_55	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA
UHGV-0210986_55	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0210986_55	Structural annotation	PF10651	NA	NA