UHGV-0211020

Genome information

Genome length 35,372 bps

CDS count 60

Completeness 59.48% (medium-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-0211020
vOTU ID	vOTU-065442
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN10290179_a1_ct6614_vs1@linear@Siphoviridae__sp._ctxHJ1
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	59.48% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.55
Jumbo phage	No

Genome content
Genome length	35,372 bps
GC content	48.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	91.62%
Average CDS length	543.20 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0211020_1	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0211020_1	UniRef90	UniRef90_A0A1C6FFC9	Phage terminase-like protein, large subunit	NA
UHGV-0211020_1	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0211020_1	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0211020_1	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0211020_1	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0211020_2	PHROG	phrog_12	portal protein	head and packaging
UHGV-0211020_2	UniRef90	UniRef90_G9YSB8	Phage portal protein, HK97 family	NA
UHGV-0211020_2	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0211020_2	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0211020_2	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0211020_2	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0211020_2	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0211020_3	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0211020_3	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0211020_3	UniRef90	UniRef90_G9YSB9	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0211020_3	eggNOG-mapper	349161.Dred_2605	Belongs to the peptidase S14 family	NA
UHGV-0211020_3	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0211020_3	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0211020_3	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0211020_4	PHROG	phrog_10	major head protein	head and packaging
UHGV-0211020_4	UniRef90	UniRef90_A0A328U7P3	Phage major capsid protein	NA
UHGV-0211020_4	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0211020_4	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0211020_4	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0211020_4	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0211020_4	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0211020_4	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0211020_5	PHROG	phrog_34916	tail fiber protein	tail
UHGV-0211020_5	UniRef90	UniRef90_UPI0018A8F63F	collagen-like protein	NA
UHGV-0211020_5	eggNOG-mapper	1232443.BAIA02000078_gene28	domain, Protein	NA
UHGV-0211020_5	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0211020_6	PHROG	phrog_749	NA	unknown function
UHGV-0211020_6	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0211020_7	PHROG	phrog_19734	NA	unknown function
UHGV-0211020_7	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-0211020_7	eggNOG-mapper	1235798.C817_04587	NA	NA
UHGV-0211020_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0211020_8	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0211020_8	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0211020_9	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0211020_9	eggNOG-mapper	1235798.C817_04589	NA	NA
UHGV-0211020_9	Structural annotation	TIGR01725	NA	NA
UHGV-0211020_10	PHROG	phrog_88	major tail protein	tail
UHGV-0211020_10	UniRef90	UniRef90_G9YSC5	Phage major tail protein, phi13 family	NA
UHGV-0211020_10	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0211020_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0211020_10	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0211020_12	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0211020_12	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0211020_12	UniRef90	UniRef90_A0A3D0XPC9	TMP_3 domain-containing protein (Fragment)	NA
UHGV-0211020_12	eggNOG-mapper	411470.RUMGNA_02228	tape measure	NA
UHGV-0211020_12	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0211020_12	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0211020_12	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0211020_12	Structural annotation	PF20155, COG5280	NA	NA
UHGV-0211020_13	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0211020_13	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0211020_13	eggNOG-mapper	1123263.AUKY01000068_gene490	tail component	NA
UHGV-0211020_13	COG	COG4722	Phage-related protein YomH	NA
UHGV-0211020_13	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0211020_14	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0211020_14	UniRef90	UniRef90_UPI001968120D	phage tail protein	NA
UHGV-0211020_14	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0211020_14	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0211020_14	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0211020_14	COG	COG4926	Phage-related protein	NA
UHGV-0211020_14	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0211020_15	PHROG	phrog_31398	NA	unknown function
UHGV-0211020_15	UniRef90	UniRef90_UPI000C79F998	H-type lectin domain-containing protein	NA
UHGV-0211020_15	eggNOG-mapper	1160721.RBI_I01572	NA	NA
UHGV-0211020_15	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0211020_16	eggNOG-mapper	445974.CLORAM_02918	NA	NA
UHGV-0211020_16	COG	COG4675	Phage tail collar domain	NA
UHGV-0211020_17	COG	COG4675	Phage tail collar domain	NA
UHGV-0211020_18	KOfam	K21472	lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]	NA
UHGV-0211020_18	UniRef90	UniRef90_UPI001966E044	peptidoglycan DD-metalloendopeptidase family protein	NA
UHGV-0211020_18	eggNOG-mapper	665956.HMPREF1032_02708	NA	NA
UHGV-0211020_18	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0211020_18	Structural annotation	PF21086, MF_01450, NF010999, COG3830	NA	NA
UHGV-0211020_19	PHROG	phrog_937	hemolysin	other
UHGV-0211020_20	PHROG	phrog_443	holin	lysis
UHGV-0211020_20	UniRef90	UniRef90_A0A1I5VN65	Phage r1t holin	NA
UHGV-0211020_20	eggNOG-mapper	1235800.C819_01425	Putative lactococcus lactis phage r1t holin	NA
UHGV-0211020_20	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0211020_20	Structural annotation	PF16945	NA	NA
UHGV-0211020_21	KOfam	K14059	int; integrase	NA
UHGV-0211020_21	PHROG	phrog_1	integrase	integration and excision
UHGV-0211020_21	UniRef90	UniRef90_UPI001966D9E7	site-specific integrase	NA
UHGV-0211020_21	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0211020_21	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0211020_21	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0211020_21	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0211020_21	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0211020_22	UniRef90	UniRef90_A0A3D0XUH6	NA	NA
UHGV-0211020_22	eggNOG-mapper	546271.Selsp_1027	NA	NA
UHGV-0211020_22	Pfam	PF10387	NA	DUF2442
UHGV-0211020_22	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0211020_22	Structural annotation	PF10387	NA	NA
UHGV-0211020_23	PHROG	phrog_14333	NA	unknown function
UHGV-0211020_23	UniRef90	UniRef90_A0A3D0XU22	NA	NA
UHGV-0211020_23	eggNOG-mapper	445975.COLSTE_01461	NA	NA
UHGV-0211020_23	Pfam	PF13711	NA	DUF4160
UHGV-0211020_23	Structural annotation	PF13711	NA	NA
UHGV-0211020_24	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0211020_24	eggNOG-mapper	196164.23492145	Host cell surface-exposed lipoprotein	NA
UHGV-0211020_24	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0211020_24	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0211020_25	PHROG	phrog_888	NA	unknown function
UHGV-0211020_25	UniRef90	UniRef90_UPI00189A9D70	NA	NA
UHGV-0211020_25	eggNOG-mapper	1151292.QEW_1347	Short C-terminal domain	NA
UHGV-0211020_25	Structural annotation	PF14471	NA	NA
UHGV-0211020_26	PHROG	phrog_87	metallo-protease	other
UHGV-0211020_26	UniRef90	UniRef90_UPI001966F635	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0211020_26	eggNOG-mapper	536232.CLM_2576	IrrE N-terminal-like domain	NA
UHGV-0211020_26	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0211020_26	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0211020_26	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0211020_27	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0211020_27	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0211020_27	UniRef90	UniRef90_UPI00164CBF89	helix-turn-helix domain-containing protein	NA
UHGV-0211020_27	eggNOG-mapper	693746.OBV_43290	addiction module antidote protein HigA	NA
UHGV-0211020_27	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0211020_27	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0211020_27	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0211020_28	UniRef90	UniRef90_UPI00164A3CC9	XRE family transcriptional regulator	NA
UHGV-0211020_28	eggNOG-mapper	742738.HMPREF9460_02486	NA	NA
UHGV-0211020_28	Structural annotation	TIGR03070	NA	NA
UHGV-0211020_35	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0211020_35	UniRef90	UniRef90_UPI0009E55993	NA	NA
UHGV-0211020_35	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-0211020_35	Pfam	PF06378	NA	DUF1071
UHGV-0211020_35	Structural annotation	PF06378, COG4712	NA	NA
UHGV-0211020_36	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0211020_36	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0211020_36	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0211020_36	Pfam	PF05772	NinB protein	NinB
UHGV-0211020_36	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0211020_37	PHROG	phrog_7566	NA	unknown function
UHGV-0211020_37	eggNOG-mapper	693746.OBV_25470	NA	NA
UHGV-0211020_38	PHROG	phrog_7545	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0211020_38	UniRef90	UniRef90_UPI00083003F9	HNH endonuclease	NA
UHGV-0211020_38	eggNOG-mapper	552525.B5LPN5_9CAUD	HNH endonuclease	NA
UHGV-0211020_38	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0211020_38	Structural annotation	PF13392, PF13384, TIGR04381, COG2771	NA	NA
UHGV-0211020_39	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0211020_39	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0211020_39	UniRef90	UniRef90_A0A316PHP0	Single-stranded DNA-binding protein	NA
UHGV-0211020_39	eggNOG-mapper	665956.HMPREF1032_00430	Single-stranded DNA-binding protein	NA
UHGV-0211020_39	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0211020_39	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0211020_39	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0211020_39	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0211020_39	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0211020_40	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0211020_40	UniRef90	UniRef90_UPI001EE2C20A	helix-turn-helix domain-containing protein	NA
UHGV-0211020_40	eggNOG-mapper	665956.HMPREF1032_02617	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0211020_40	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0211020_40	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0211020_41	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0211020_41	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0211020_41	UniRef90	UniRef90_A0A0W7TNB4	DNA helicase	NA
UHGV-0211020_41	eggNOG-mapper	665956.HMPREF1032_02618	Participates in initiation and elongation during chromosome replication	NA
UHGV-0211020_41	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0211020_41	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0211020_41	COG	COG0305	Replicative DNA helicase	NA
UHGV-0211020_41	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0211020_42	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0211020_42	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0211020_42	UniRef90	UniRef90_UPI0006D84EB7	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0211020_42	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0211020_42	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0211020_44	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0211020_44	UniRef90	UniRef90_A0A4D7ANR2	Lar family restriction alleviation protein	NA
UHGV-0211020_44	eggNOG-mapper	742738.HMPREF9460_04054	Restriction alleviation protein Lar	NA
UHGV-0211020_44	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0211020_44	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0211020_45	PHROG	phrog_10714	NA	unknown function
UHGV-0211020_45	eggNOG-mapper	742738.HMPREF9460_04055	NA	NA
UHGV-0211020_47	PHROG	phrog_25732	NA	unknown function
UHGV-0211020_47	UniRef90	UniRef90_A0A7G9WJW0	Lar family restriction alleviation protein	NA
UHGV-0211020_47	Structural annotation	COG4466	NA	NA
UHGV-0211020_49	PHROG	phrog_37865	NA	unknown function
UHGV-0211020_50	eggNOG-mapper	742738.HMPREF9460_04055	NA	NA
UHGV-0211020_51	PHROG	phrog_25732	NA	unknown function
UHGV-0211020_54	PHROG	phrog_38832	NA	unknown function
UHGV-0211020_54	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0211020_55	PHROG	phrog_22543	NA	unknown function
UHGV-0211020_57	PHROG	phrog_1934	NA	unknown function
UHGV-0211020_57	UniRef90	UniRef90_UPI0018AC0226	zinc-finger-containing protein	NA
UHGV-0211020_57	eggNOG-mapper	397290.C810_01488	zinc-finger-containing domain	NA
UHGV-0211020_57	Pfam	PF11672	zinc-finger-containing domain	DUF3268
UHGV-0211020_57	Structural annotation	PF11672	NA	NA
UHGV-0211020_58	eggNOG-mapper	411462.DORLON_00765	NA	NA
UHGV-0211020_60	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0211020_60	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0211020_60	eggNOG-mapper	428125.CLOLEP_01814	COG NOG14118 non supervised orthologous group	NA
UHGV-0211020_60	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA