UHGV-0211135

Genome information

Genome length 31,842 bps

CDS count 46

Completeness 91.16% (high-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-0211135
vOTU ID	vOTU-068980
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN09781787_a1_ct118778_vs1@Siphoviridae__sp._cta341
BioSample	SAMN09781787
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.16% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18
Jumbo phage	No

Genome content
Genome length	31,842 bps
GC content	57.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	92.64%
Average CDS length	644.35 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0211135_1	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0211135_1	UniRef90	UniRef90_G9YSB5	HNH domain-containing protein	NA
UHGV-0211135_1	eggNOG-mapper	1235792.C808_00081	HNH nucleases	NA
UHGV-0211135_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0211135_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0211135_2	UniRef90	UniRef90_UPI001F232519	cysteine-rich KTR domain-containing protein	NA
UHGV-0211135_2	eggNOG-mapper	1226322.HMPREF1545_00110	Cysteine-rich KTR	NA
UHGV-0211135_2	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0211135_2	Structural annotation	PF14205	NA	NA
UHGV-0211135_3	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0211135_3	eggNOG-mapper	693746.OBV_19950	NA	NA
UHGV-0211135_3	Structural annotation	PF11726	NA	NA
UHGV-0211135_5	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0211135_5	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0211135_7	PHROG	phrog_38832	NA	unknown function
UHGV-0211135_7	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0211135_7	Structural annotation	PF11717, TIGR02450	NA	NA
UHGV-0211135_8	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0211135_8	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0211135_8	UniRef90	UniRef90_A0A1C6E635	Methyltransferase	NA
UHGV-0211135_8	eggNOG-mapper	1329516.JPST01000005_gene1303	DNA methylase	NA
UHGV-0211135_8	PADLOC	MTase_II_00173	Type II methyltransferase	RM
UHGV-0211135_8	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0211135_8	COG	COG0863	DNA modification methylase	NA
UHGV-0211135_8	Structural annotation	PF01555, NF008572, COG0863	NA	NA
UHGV-0211135_12	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0211135_12	PHROG	phrog_27290	NA	unknown function
UHGV-0211135_12	UniRef90	UniRef90_A0A3D4EJM0	Chromosome partitioning protein ParB	NA
UHGV-0211135_12	eggNOG-mapper	742738.HMPREF9460_00856	ParB-like nuclease domain	NA
UHGV-0211135_12	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0211135_12	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0211135_12	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0211135_13	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0211135_13	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0211135_13	UniRef90	UniRef90_UPI000318E277	ParA family protein	NA
UHGV-0211135_13	eggNOG-mapper	1226322.HMPREF1545_00097	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0211135_13	Pfam	PF13614	AAA domain	AAA_31
UHGV-0211135_13	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0211135_13	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0211135_14	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0211135_14	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0211135_14	UniRef90	UniRef90_UPI00195856D7	AAA family ATPase	NA
UHGV-0211135_14	eggNOG-mapper	693746.OBV_27440	DnaB-like helicase N terminal domain	NA
UHGV-0211135_14	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0211135_14	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0211135_14	COG	COG0305	Replicative DNA helicase	NA
UHGV-0211135_14	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0211135_15	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0211135_15	UniRef90	UniRef90_UPI0002DD08A7	helix-turn-helix domain-containing protein	NA
UHGV-0211135_15	eggNOG-mapper	693746.OBV_19830	DnaD domain protein	NA
UHGV-0211135_15	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0211135_15	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0211135_15	Structural annotation	NF040939, COG3355	NA	NA
UHGV-0211135_17	Structural annotation	PF21327	NA	NA
UHGV-0211135_18	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0211135_18	UniRef90	UniRef90_UPI001BB4836B	helix-turn-helix domain-containing protein	NA
UHGV-0211135_18	eggNOG-mapper	1203606.HMPREF1526_00992	Helix-turn-helix XRE-family like proteins	NA
UHGV-0211135_18	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0211135_18	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0211135_18	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0211135_20	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0211135_20	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0211135_20	UniRef90	UniRef90_A0A8J6JFY8	Helix-turn-helix transcriptional regulator	NA
UHGV-0211135_20	eggNOG-mapper	1094466.KQS_00535	Helix-turn-helix XRE-family like proteins	NA
UHGV-0211135_20	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0211135_20	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0211135_20	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0211135_21	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0211135_21	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0211135_21	UniRef90	UniRef90_A0A1Y4S764	BRCT domain-containing protein	NA
UHGV-0211135_21	eggNOG-mapper	177437.HRM2_p00730	EXOIII	NA
UHGV-0211135_21	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0211135_21	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0211135_21	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0211135_21	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0211135_21	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA
UHGV-0211135_22	UniRef90	UniRef90_A0A1Y3ZTC9	HTH cro/C1-type domain-containing protein	NA
UHGV-0211135_22	eggNOG-mapper	693746.OBV_19770	sequence-specific DNA binding	NA
UHGV-0211135_22	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0211135_22	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0211135_22	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0211135_23	PHROG	phrog_22683	NA	unknown function
UHGV-0211135_23	UniRef90	UniRef90_A0A3E2U205	NA	NA
UHGV-0211135_23	eggNOG-mapper	1008453.HMPREF9957_0722	NA	NA
UHGV-0211135_23	AcrCatalog	cluster_3962	NA	NA
UHGV-0211135_23	Pfam	PF13783	NA	DUF4177
UHGV-0211135_23	Structural annotation	PF13783, NF008362, COG3499	NA	NA
UHGV-0211135_24	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0211135_24	PHROG	phrog_95	integrase	integration and excision
UHGV-0211135_24	UniRef90	UniRef90_A0A352ULE7	Recombinase family protein	NA
UHGV-0211135_24	eggNOG-mapper	1121344.JHZO01000003_gene691	resolvase	NA
UHGV-0211135_24	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0211135_24	Pfam	PF07508	Recombinase	Recombinase
UHGV-0211135_24	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0211135_24	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0211135_25	UniRef90	UniRef90_A0A6N3FXW7	Helix-turn-helix	NA
UHGV-0211135_25	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-0211135_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0211135_25	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0211135_25	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0211135_27	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0211135_27	PHROG	phrog_435	endolysin	lysis
UHGV-0211135_27	UniRef90	UniRef90_A0A810PZ73	SPOR domain-containing protein	NA
UHGV-0211135_27	eggNOG-mapper	697281.Mahau_0053	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0211135_27	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0211135_27	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0211135_27	Pfam	PF05036	SPOR domain	SPOR
UHGV-0211135_27	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0211135_27	Structural annotation	PF01520, PF08230, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0211135_28	PHROG	phrog_443	holin	lysis
UHGV-0211135_28	UniRef90	UniRef90_UPI0009B98E42	holin	NA
UHGV-0211135_28	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0211135_28	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0211135_28	Structural annotation	PF16945	NA	NA
UHGV-0211135_29	KOfam	K23533	LINGO, LRRN6; leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein	NA
UHGV-0211135_29	PHROG	phrog_35892	NA	unknown function
UHGV-0211135_29	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0211135_29	Pfam	PF13855	Leucine rich repeat	LRR_8
UHGV-0211135_29	Structural annotation	PF13306, NF041351	NA	NA
UHGV-0211135_30	PHROG	phrog_15594	NA	unknown function
UHGV-0211135_30	eggNOG-mapper	1118055.CAGU01000013_gene763	NA	NA
UHGV-0211135_30	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-0211135_31	PHROG	phrog_1863	NA	unknown function
UHGV-0211135_31	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0211135_32	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0211135_32	UniRef90	UniRef90_A0A1C6H6B4	Phage-related protein	NA
UHGV-0211135_32	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0211135_32	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0211135_32	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0211135_32	COG	COG4926	Phage-related protein	NA
UHGV-0211135_32	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0211135_33	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0211135_33	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0211135_33	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0211135_33	COG	COG4722	Phage-related protein YomH	NA
UHGV-0211135_33	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0211135_34	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0211135_34	UniRef90	UniRef90_A0A373CK98	PblA (Fragment)	NA
UHGV-0211135_34	eggNOG-mapper	573061.Clocel_3967	tape measure	NA
UHGV-0211135_34	COG	COG5283	Phage-related tail protein	NA
UHGV-0211135_34	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-0211135_37	PHROG	phrog_88	major tail protein	tail
UHGV-0211135_37	UniRef90	UniRef90_UPI0018771F27	phage tail protein	NA
UHGV-0211135_37	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0211135_37	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0211135_37	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0211135_38	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0211135_38	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-0211135_38	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0211135_38	Structural annotation	TIGR01725	NA	NA
UHGV-0211135_39	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0211135_39	Structural annotation	PF05657	NA	NA
UHGV-0211135_40	PHROG	phrog_19734	NA	unknown function
UHGV-0211135_40	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-0211135_40	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0211135_40	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0211135_41	PHROG	phrog_749	NA	unknown function
UHGV-0211135_41	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0211135_42	PHROG	phrog_10	major head protein	head and packaging
UHGV-0211135_42	UniRef90	UniRef90_G9YSC0	Cadherin-like domain-containing protein	NA
UHGV-0211135_42	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0211135_42	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0211135_42	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0211135_42	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0211135_42	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0211135_42	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0211135_43	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0211135_43	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0211135_43	UniRef90	UniRef90_A0A1Y4BT12	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0211135_43	eggNOG-mapper	349161.Dred_2605	Belongs to the peptidase S14 family	NA
UHGV-0211135_43	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0211135_43	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0211135_43	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0211135_44	PHROG	phrog_12	portal protein	head and packaging
UHGV-0211135_44	UniRef90	UniRef90_UPI0018755FA4	phage portal protein	NA
UHGV-0211135_44	eggNOG-mapper	610130.Closa_0742	Phage portal protein, HK97 family	NA
UHGV-0211135_44	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0211135_44	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0211135_44	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0211135_44	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0211135_45	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0211135_45	UniRef90	UniRef90_A0A6I7GGF0	Terminase	NA
UHGV-0211135_45	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0211135_45	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0211135_45	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0211135_45	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0211135_45	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0211135_46	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0211135_46	UniRef90	UniRef90_UPI00195E8788	P27 family phage terminase small subunit	NA
UHGV-0211135_46	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0211135_46	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA