UHGV-0211422

Genome information

Genome length 33,100 bps

CDS count 51

Completeness 88.90% (medium-quality)

geNomad score 0.9735

Prediction confidence Confident

Genome information
Genome ID	UHGV-0211422
vOTU ID	vOTU-030988
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SRS076756_a1_ct19292_vs1@Siphoviridae__sp._cteQ21
BioSample	SAMN10657952
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.90% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9735
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.18
Jumbo phage	No

Genome content
Genome length	33,100 bps
GC content	59.31%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	92.50%
Average CDS length	603.18 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0211422_2	eggNOG-mapper	1007096.BAGW01000036_gene2667	NA	NA
UHGV-0211422_3	UniRef90	UniRef90_A0A4D7AHL6	Collagen-like protein	NA
UHGV-0211422_3	eggNOG-mapper	1226322.HMPREF1545_00064	NA	NA
UHGV-0211422_4	PHROG	phrog_521	tail protein	tail
UHGV-0211422_4	UniRef90	UniRef90_UPI001C00D44E	NA	NA
UHGV-0211422_4	eggNOG-mapper	536232.CLM_1676	NA	NA
UHGV-0211422_4	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0211422_4	COG	COG3778	NA	NA
UHGV-0211422_4	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0211422_5	PHROG	phrog_6	baseplate protein	tail
UHGV-0211422_5	UniRef90	UniRef90_A0A7X3DGX1	Baseplate J/gp47 family protein	NA
UHGV-0211422_5	eggNOG-mapper	1203606.HMPREF1526_01353	Baseplate J-like protein	NA
UHGV-0211422_5	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0211422_5	COG	COG3299	NA	NA
UHGV-0211422_5	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0211422_6	UniRef90	UniRef90_UPI001C010E9D	NA	NA
UHGV-0211422_6	eggNOG-mapper	1203606.HMPREF1526_01352	NA	NA
UHGV-0211422_6	Pfam	PF10934	NA	DUF2634
UHGV-0211422_6	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0211422_6	Structural annotation	PF10934, MF_02010, NF010728, COG4381	NA	NA
UHGV-0211422_7	Structural annotation	PF10844	NA	NA
UHGV-0211422_8	PHROG	phrog_400	tail protein	tail
UHGV-0211422_8	UniRef90	UniRef90_A0A1C6BFH5	Peptidase C51 domain-containing protein	NA
UHGV-0211422_8	eggNOG-mapper	1203606.HMPREF1526_01350	Late control gene D protein	NA
UHGV-0211422_8	COG	COG3500	NA	NA
UHGV-0211422_8	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0211422_9	PHROG	phrog_5184	NA	unknown function
UHGV-0211422_9	UniRef90	UniRef90_UPI000F05162E	phage portal protein	NA
UHGV-0211422_9	eggNOG-mapper	1007103.AFHW01000034_gene2068	protein containing LysM domain	NA
UHGV-0211422_9	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0211422_9	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-0211422_10	PHROG	phrog_973	tail length tape measure protein	tail
UHGV-0211422_10	UniRef90	UniRef90_A0A3F2ZYT8	Putative prophage LambdaBa01, membrane protein	NA
UHGV-0211422_10	eggNOG-mapper	632245.CLP_2908	phage tail tape measure protein	NA
UHGV-0211422_10	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0211422_10	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0211422_12	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-0211422_12	eggNOG-mapper	1203606.HMPREF1526_01346	NA	NA
UHGV-0211422_12	Structural annotation	PF08890, TIGR01674	NA	NA
UHGV-0211422_13	PHROG	phrog_365	tail protein	tail
UHGV-0211422_13	UniRef90	UniRef90_A0A7X3ARL5	Terminase	NA
UHGV-0211422_13	eggNOG-mapper	641107.CDLVIII_1345	Phage tail tube protein	NA
UHGV-0211422_13	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0211422_13	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0211422_14	PHROG	phrog_1480	tail sheath	tail
UHGV-0211422_14	UniRef90	UniRef90_A0A7X3ARB4	Phage tail protein	NA
UHGV-0211422_14	eggNOG-mapper	97138.C820_00609	Phage tail sheath C-terminal domain	NA
UHGV-0211422_14	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0211422_14	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0211422_15	PHROG	phrog_525	NA	unknown function
UHGV-0211422_15	eggNOG-mapper	632245.CLP_2913	NA	NA
UHGV-0211422_15	Pfam	PF20765	NA	DUF6838
UHGV-0211422_15	Structural annotation	PF20765, TIGR01633, COG5003	NA	NA
UHGV-0211422_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0211422_16	UniRef90	UniRef90_UPI001C02CC0B	HK97 gp10 family phage protein	NA
UHGV-0211422_16	eggNOG-mapper	469617.FUAG_01842	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0211422_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0211422_16	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0211422_17	PHROG	phrog_25	head closure Hc1	connector
UHGV-0211422_17	UniRef90	UniRef90_A0A7X3ASG9	Head-tail adaptor protein	NA
UHGV-0211422_17	eggNOG-mapper	97138.C820_00612	Phage head-tail adaptor	NA
UHGV-0211422_17	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0211422_17	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0211422_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0211422_18	PHROG	phrog_14333	NA	unknown function
UHGV-0211422_18	UniRef90	UniRef90_A0A7X3AR62	NA	NA
UHGV-0211422_18	eggNOG-mapper	1045858.Bint_0544	NA	NA
UHGV-0211422_18	Pfam	PF13711	NA	DUF4160
UHGV-0211422_18	Structural annotation	PF13711	NA	NA
UHGV-0211422_19	PHROG	phrog_2655	excisionase	integration and excision
UHGV-0211422_19	UniRef90	UniRef90_A0A7X3AR57	NA	NA
UHGV-0211422_19	eggNOG-mapper	665956.HMPREF1032_00099	NA	NA
UHGV-0211422_19	Pfam	PF10387	NA	DUF2442
UHGV-0211422_19	Pfam	PF20038	Helix-turn-helix domain	HTH_59
UHGV-0211422_21	UniRef90	UniRef90_UPI001C018007	head-tail connector protein	NA
UHGV-0211422_21	eggNOG-mapper	693746.OBV_20060	NA	NA
UHGV-0211422_21	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0211422_21	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0211422_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-0211422_22	UniRef90	UniRef90_A0A1Y4RLC8	Phage major capsid protein	NA
UHGV-0211422_22	eggNOG-mapper	1209989.TepiRe1_2603	Phage capsid family	NA
UHGV-0211422_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0211422_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0211422_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0211422_22	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0211422_23	PHROG	phrog_16951	NA	unknown function
UHGV-0211422_23	eggNOG-mapper	693746.OBV_18840	NA	NA
UHGV-0211422_23	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0211422_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-0211422_24	UniRef90	UniRef90_UPI001C011923	phage portal protein	NA
UHGV-0211422_24	eggNOG-mapper	861450.HMPREF0080_02045	Phage portal protein	NA
UHGV-0211422_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0211422_24	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0211422_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0211422_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0211422_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0211422_26	UniRef90	UniRef90_UPI001BB476F6	terminase large subunit	NA
UHGV-0211422_26	eggNOG-mapper	1007096.BAGW01000012_gene2374	Phage Terminase	NA
UHGV-0211422_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0211422_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0211422_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0211422_26	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0211422_27	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0211422_27	UniRef90	UniRef90_A0A7X3ARK7	P27 family phage terminase small subunit	NA
UHGV-0211422_27	eggNOG-mapper	1007096.BAGW01000012_gene2373	Phage terminase, small subunit	NA
UHGV-0211422_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0211422_27	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0211422_27	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0211422_27	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0211422_29	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0211422_29	UniRef90	UniRef90_UPI001BB476DD	HNH endonuclease	NA
UHGV-0211422_29	eggNOG-mapper	693746.OBV_19960	HNH endonuclease	NA
UHGV-0211422_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0211422_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0211422_29	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0211422_30	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0211422_30	eggNOG-mapper	742738.HMPREF9460_04063	NA	NA
UHGV-0211422_30	Structural annotation	PF01446	NA	NA
UHGV-0211422_31	UniRef90	UniRef90_A0A2V2EEG3	NA	NA
UHGV-0211422_31	Pfam	PF04448	NA	DUF551
UHGV-0211422_31	Structural annotation	NF041588	NA	NA
UHGV-0211422_32	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0211422_32	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0211422_32	UniRef90	UniRef90_UPI0002D3AA8D	single-stranded DNA-binding protein	NA
UHGV-0211422_32	eggNOG-mapper	693746.OBV_19910	Single-strand binding protein family	NA
UHGV-0211422_32	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0211422_32	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0211422_32	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0211422_32	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0211422_32	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0211422_34	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0211422_34	Structural annotation	NF040595	NA	NA
UHGV-0211422_36	eggNOG-mapper	693746.OBV_19880	NA	NA
UHGV-0211422_38	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0211422_38	PHROG	phrog_27290	NA	unknown function
UHGV-0211422_38	UniRef90	UniRef90_UPI0003130F10	ParB N-terminal domain-containing protein	NA
UHGV-0211422_38	eggNOG-mapper	1007096.BAGW01000033_gene1613	ParB-like nuclease domain	NA
UHGV-0211422_38	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0211422_38	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0211422_38	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0211422_39	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0211422_39	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0211422_39	UniRef90	UniRef90_UPI000318E277	ParA family protein	NA
UHGV-0211422_39	eggNOG-mapper	1007096.BAGW01000033_gene1614	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0211422_39	Pfam	PF13614	AAA domain	AAA_31
UHGV-0211422_39	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0211422_39	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0211422_41	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0211422_41	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0211422_41	UniRef90	UniRef90_U2SBV6	DNA helicase	NA
UHGV-0211422_41	eggNOG-mapper	1007096.BAGW01000033_gene1616	DnaB-like helicase N terminal domain	NA
UHGV-0211422_41	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0211422_41	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0211422_41	COG	COG0305	Replicative DNA helicase	NA
UHGV-0211422_41	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0211422_42	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0211422_42	UniRef90	UniRef90_UPI001C0106CE	helix-turn-helix domain-containing protein	NA
UHGV-0211422_42	eggNOG-mapper	1007096.BAGW01000033_gene1617	ROK family	NA
UHGV-0211422_42	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0211422_42	COG	COG3355	Predicted transcriptional regulator	NA
UHGV-0211422_42	Structural annotation	PF02295, MF_01819, TIGR04176, COG3355	NA	NA
UHGV-0211422_44	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0211422_44	UniRef90	UniRef90_UPI001C01DF91	helix-turn-helix transcriptional regulator	NA
UHGV-0211422_44	eggNOG-mapper	1226322.HMPREF1545_00092	Helix-turn-helix XRE-family like proteins	NA
UHGV-0211422_44	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0211422_44	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0211422_44	Structural annotation	PF01381, NF040522, COG1476	NA	NA
UHGV-0211422_45	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-0211422_46	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0211422_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0211422_46	UniRef90	UniRef90_A0A1Y4RYT3	HTH cro/C1-type domain-containing protein	NA
UHGV-0211422_46	eggNOG-mapper	1211819.CALK01000019_gene641	Helix-turn-helix XRE-family like proteins	NA
UHGV-0211422_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0211422_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0211422_46	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0211422_47	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0211422_47	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0211422_47	UniRef90	UniRef90_A0A1Y4KMC0	HTH cro/C1-type domain-containing protein	NA
UHGV-0211422_47	eggNOG-mapper	428125.CLOLEP_01832	DNA-binding helix-turn-helix protein	NA
UHGV-0211422_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0211422_47	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0211422_47	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0211422_47	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0211422_49	PHROG	phrog_1847	NA	unknown function
UHGV-0211422_49	UniRef90	UniRef90_A0A4Q1CG50	NA	NA
UHGV-0211422_49	eggNOG-mapper	1121287.AUMU01000001_gene1311	T5orf172	NA
UHGV-0211422_49	Pfam	PF13250	NA	DUF4041
UHGV-0211422_49	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0211422_49	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0211422_49	Structural annotation	PF02970, NF041454	NA	NA
UHGV-0211422_50	KOfam	K14059	int; integrase	NA
UHGV-0211422_50	PHROG	phrog_1	integrase	integration and excision
UHGV-0211422_50	UniRef90	UniRef90_UPI001C03825E	site-specific integrase	NA
UHGV-0211422_50	eggNOG-mapper	1514668.JOOA01000001_gene242	Phage integrase family	NA
UHGV-0211422_50	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0211422_50	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0211422_50	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0211422_51	eggNOG-mapper	1519439.JPJG01000074_gene1265	NA	NA